Exemplos de reverse_complement_motif em C++ (Cpp)

Exemplo n.º 1

Arquivo: motif.c Projeto: CPFL/gmeme

/***********************************************************************
 * Duplicates and reverse complements the motif
 ***********************************************************************/
MOTIF_T* dup_rc_motif
  (MOTIF_T *motif)
{
  MOTIF_T *rc_motif;
  rc_motif = mm_malloc(sizeof(MOTIF_T));
  copy_motif(motif, rc_motif);
  reverse_complement_motif(rc_motif);
  return rc_motif;
}

Exemplo n.º 2

Arquivo: meme2images.c Projeto: brsaran/FuzzyApp

/**************************************************************************
 * Generate logos for a motif
 * Warning, this may modify the path and motif arguments.
 **************************************************************************/
static void generate_motif_logos(OPTIONS_T *options, STR_T *path, MOTIF_T *motif) {
  int path_len;
  char name[MAX_MOTIF_ID_LENGTH + 1];

  copy_and_sanatise_name(name, get_motif_id(motif), MAX_MOTIF_ID_LENGTH);
  name[MAX_MOTIF_ID_LENGTH] = '\0';
  path_len = str_len(path);
  
  str_appendf(path, "logo%s", name);
  CL_create1(motif, FALSE, FALSE, "MEME (no SSC)", str_internal(path), 
      options->eps, options->png);

  if (options->rc) {
    str_truncate(path, path_len);
    str_appendf(path, "logo_rc%s", name);
    reverse_complement_motif(motif);
    CL_create1(motif, FALSE, FALSE, "MEME (no SSC)", str_internal(path), 
        options->eps, options->png);
  }

  str_truncate(path, path_len);
}