void gibbs::train(size_t numTopics) {
this->numTopics = numTopics;
zero_init_counts();
random_assign_topics();
this->beta = 1/numTerms;
double max_iter = MAX_ITER;
for(int iter=0; iter<max_iter; ++iter){
for(int d=0; d<numDocs; ++d){
document curr_doc = corpus.docs[d];
int doc_word_index = 0;
for(auto const& word_count : curr_doc.wordCounts){
int w = word_count.first;
int count = word_count.second;
for(int i=0; i<count; ++i){
// get current assignment
int z = topic_assignments[d][doc_word_index];
// decrement counts
n_dk[d][z] -= 1;
n_kw[z][w] -= 1;
n_k[z] -= 1;
n_d[d] -= 1;
// get conditional distribution
std::vector<double> pz = get_pz(d, w);
// update assignment
z = sample_multinomial(pz);
topic_assignments[d][doc_word_index] = z;
doc_word_index++;
// update counts
n_dk[d][z] += 1;
n_kw[z][w] += 1;
n_k[z] += 1;
n_d[d] += 1;
}
}
}
std::cout << "<";
int count = 0;
int length = 50;
for(int x=0; x<(iter/max_iter)*length; x++){
std::cout << "=";
count++;
}
for(int x=0; x<length-count; x++){
std::cout << "-";
}
std::cout << "> " << iter+1 << "/" << max_iter << '\r' << std::flush;
}
// update phi and theta
estimate_parameters();
}
void TopicSearch::init_z_with_beta(){
this->initial_z_ = zeros<uvec>(this->num_word_instances_);
this->sampled_z_ = zeros<uvec>(this->num_word_instances_);
for(size_t j = 0; j < this->num_word_instances_; j++)
this->initial_z_(j) = sample_multinomial(this->init_beta_sample_.col(this->word_ids_(j)));
}
void TopicSearch::run_hybrid_random_walk_simulated_annealing_uniform2(
vec iter_temperature,
double random_walk_prob,
double percent_random_walk){
size_t accepted_Z_instances;
bool valid_burn_in_period;
Timer timer = Timer();
timer.restart_time();
init_z();
if (this->burn_in_period_ > 0 && this->burn_in_period_ < this->max_iterations_){
valid_burn_in_period = true;
accepted_Z_instances = ceil((this->max_iterations_ - this->burn_in_period_) / this->spacing);
}
else {
valid_burn_in_period = false;
accepted_Z_instances = ceil(this->max_iterations_ / this->spacing);
}
for (size_t d = 0; d < this->num_documents_; d++){ // START For each document
size_t num_words = this->document_lengths_[d];
umat accepted_Z = zeros<umat>(num_words, accepted_Z_instances);
vec accepted_Z_pp = zeros<vec>(accepted_Z_instances);
uvec proposed_Z = zeros<uvec>(num_words);
uvec current_Z = zeros<uvec>(num_words);
size_t acceptance_count = 0;
size_t count = 0;
size_t num_random_walks = 0;
size_t num_random_walks2 = 0;
uvec sampled_z;
uvec sampled_z2;
vector <size_t> word_indices = this->document_word_indices_[d];
long double ppZ;
long double ppZ_prime;
long double tpZ_prime;
long double tpZ;
long double p_ratio;
long double q_ratio;
double acceptance_probability;
double multi_jump_prob = percent_random_walk / 100.0;
for (size_t n = 0; n < num_words; n++)
current_Z(n) = this->initial_z_(word_indices[n]);
ppZ = calc_ln_partition_probality(word_indices, current_Z);
for (size_t iter = 0; iter < this->max_iterations_; iter++){ // START TOPIC SEARCH
if (this->sample_uniform() <= random_walk_prob){ // do random walk from the previous state
num_random_walks++;
proposed_Z = current_Z;
for (size_t i = 0; i < num_words; i++){
if (this->sample_uniform() <= multi_jump_prob){ /// for each word with some probability multinomial jump
proposed_Z(i) = sample_multinomial(this->init_beta_sample_.col(this->word_ids_(word_indices[i])));
num_random_walks2++;
}
}
}
else { // do sample from a uniform
for (size_t i = 0; i < num_words; i++)
proposed_Z(i) = sample_uniform_int(this->num_topics_);
}
ppZ_prime = calc_ln_partition_probality(word_indices, proposed_Z);
p_ratio = ppZ_prime - ppZ;
tpZ_prime = calc_lnTP_hybrid_multi_randomwalk(num_words, word_indices, current_Z, random_walk_prob, multi_jump_prob);
tpZ = calc_lnTP_hybrid_multi_randomwalk(num_words, word_indices, proposed_Z, random_walk_prob, multi_jump_prob);
q_ratio = tpZ_prime - tpZ;
assert(iter_temperature(iter) > 0);
// acceptance_probability = min(1.0L, pow(exp(p_ratio), (1 / iter_temperature(iter)))); // MH acceptance probability
acceptance_probability = min(1.0L, pow(exp(p_ratio + q_ratio), (1.0 / iter_temperature(iter)))); // MH acceptance probability
if (this->sample_uniform() <= acceptance_probability){
current_Z = proposed_Z;
ppZ = ppZ_prime;
acceptance_count++;
// if (this->verbose_ >= 1){
// cout << "doc " << d + 1 << " iter " << iter + 1;
// cout << " accepted";
// cout << " [a.p. = " << pow(exp(p_ratio), (1 / iter_temperature(iter)))
// << " ln P(z') = " << ppZ_prime << " ln P(z) = " << ppZ
// << " a.count = " << acceptance_count << " ]" << endl;
// }
}
if (((iter + 1) % this->spacing == 0) && (!valid_burn_in_period || (valid_burn_in_period && (this->burn_in_period_ < iter)))) {
accepted_Z.col(count) = current_Z;
accepted_Z_pp(count) = ppZ_prime;
count++;
}
} // END TOPIC SEARCH
// Saves the results to the class variable
sampled_z = find_mode(accepted_Z);
sampled_z2 = accepted_Z.col(count - 1);
for (size_t n = 0; n < num_words; n++){
this->sampled_z_(word_indices[n]) = sampled_z(n);
this->beta_counts_(this->sampled_z_(word_indices[n]), this->word_ids_(word_indices[n])) += 1;
this->beta_counts_last_(sampled_z2(n), this->word_ids_(word_indices[n])) += 1;
}
// Calculates theta counts
this->theta_counts_.col(d) = calc_topic_counts(sampled_z, this->num_topics_);
this->theta_counts_last_.col(d) = calc_topic_counts(sampled_z2, this->num_topics_);
// Resets all used data structures
current_Z.reset();
proposed_Z.reset();
accepted_Z.reset();
sampled_z.reset();
sampled_z2.reset();
// if (this->verbose_ >= 1)
cout << "doc " << d + 1 << " accepted # " << acceptance_count << " random walks # " << num_random_walks << " actual random walks # " << num_random_walks2 << endl;
} // END For each document
// if (this->verbose_ >= 1){
cout << endl << "Total execution time: " << timer.get_time() << "s" << endl;
cout << "Model perplexity: " << calc_corpus_perplexity() << endl; // using beta_counts_ and theta_counts_
cout << "Log partition probability: " << calc_ln_corpus_partition_probality() << endl;
// }
}
void TopicSearch::run_hybrid_random_walk_simulated_annealing(
vec iter_temperature,
double random_walk_prob,
double percent_random_walk){
size_t accepted_Z_instances;
bool valid_burn_in_period;
Timer timer = Timer();
timer.restart_time();
init_z();
mat multinomial_prob = init_topical_Multinomial_probabilities();
if (this->verbose_ >= 1)
cout << "Multinomial probabilities: " << endl << multinomial_prob;
if (this->burn_in_period_ > 0 && this->burn_in_period_ < this->max_iterations_){
valid_burn_in_period = true;
accepted_Z_instances = ceil((this->max_iterations_ - this->burn_in_period_) / this->spacing);
}
else {
valid_burn_in_period = false;
accepted_Z_instances = ceil(this->max_iterations_ / this->spacing);
}
for (size_t d = 0; d < this->num_documents_; d++){ // START For each document
size_t num_words = this->document_lengths_[d];
umat accepted_Z = zeros<umat>(num_words, accepted_Z_instances);
uvec proposed_Z = zeros<uvec>(num_words);
uvec current_Z = zeros<uvec>(num_words);
size_t acceptance_count = 0;
size_t count = 0;
size_t random_walk_count = ceil((percent_random_walk / 100) * num_words);
size_t num_random_walks = 0;
uvec sampled_z;
uvec sampled_z2;
vector <size_t> word_indices = this->document_word_indices_[d];
for (size_t n = 0; n < num_words; n++)
current_Z(n) = this->initial_z_(word_indices[n]);
long double ppZ = calc_ln_partition_probality(word_indices, current_Z);
for (size_t iter = 0; iter < this->max_iterations_; iter++){ // START TOPIC SEARCH
if (this->sample_uniform() <= random_walk_prob){ // do random walk from the previous state
num_random_walks++;
proposed_Z = current_Z;
for (size_t s = 0; s < random_walk_count; s++){
size_t idx = sample_uniform_int(num_words); // selects a word at random
while(1){
size_t topic = sample_uniform_int(this->num_topics_);
if (topic != current_Z(idx)){
proposed_Z(idx) = topic;
break;
}
}
}
}
else { // do sample from the topic specific Multinomial
for (size_t i = 0; i < num_words; i++)
proposed_Z(i) = sample_multinomial(multinomial_prob.col(current_Z(i)));
}
long double ppZ_prime = calc_ln_partition_probality(word_indices, proposed_Z);
long double tpZ_prime = calc_lnTP_hybrid_randomwalk(
num_words, proposed_Z, current_Z, multinomial_prob, random_walk_prob, random_walk_count);
long double tpZ = calc_lnTP_hybrid_randomwalk(
num_words, current_Z, proposed_Z, multinomial_prob, random_walk_prob, random_walk_count);
long double p_ratio = ppZ_prime - ppZ;
long double q_ratio = tpZ_prime - tpZ;
double acceptance_probability = min(1.0L, pow(exp(p_ratio + q_ratio), (1 / iter_temperature(iter)))); // MH acceptance probability
if (this->sample_uniform() <= acceptance_probability){
ppZ = ppZ_prime; // To avoid re-calculation
current_Z = proposed_Z;
acceptance_count++;
// if (this->verbose_ >= 1){
//
// cout << "doc " << d + 1 << " iter " << iter + 1;
// cout << " accepted";
// cout << " [a.p. = " << pow(exp(p_ratio + q_ratio), (1 / iter_temperature(iter)))
// // << " t.ratio = " << exp(q_ratio) << " p.ratio = " << exp(p_ratio)
// << " ln P(z') = " << ppZ_prime << " ln P(z) = " << ppZ
// << " ln T(z',z) = " << tpZ_prime << " ln T(z,z') = " << tpZ
// << " a.count = " << acceptance_count << " ]" << endl;
// }
}
if ((iter % this->spacing == 0)
&& (!valid_burn_in_period || (valid_burn_in_period
&& (this->burn_in_period_ < iter)))) {
accepted_Z.col(count) = current_Z;
count++;
}
} // END TOPIC SEARCH
// // Saves the results to the class variables
// sampled_z = find_mode(accepted_Z);
// sampled_z2 = accepted_Z.col(count - 1);
//// for (size_t n = 0; n < num_words; n++){
//// this->sampled_z_(word_indices[n]) = sampled_z(n);
//// this->beta_counts_(this->sampled_z_(word_indices[n]), this->word_ids_(word_indices[n])) += 1;
//// this->beta_counts_last_(sampled_z2(n), this->word_ids_(word_indices[n])) += 1;
//// }
//
// // Calculates theta counts
// this->theta_counts_.col(d) = calc_topic_counts(sampled_z, this->num_topics_);
// this->theta_counts_last_.col(d) = calc_topic_counts(sampled_z2, this->num_topics_);
//
// // Resets all used data structures
// current_Z.reset();
// proposed_Z.reset();
// accepted_Z.reset();
// sampled_z.reset();
// sampled_z2.reset();
// Saves the results to the class variable
sampled_z = find_mode(accepted_Z);
sampled_z2 = accepted_Z.col(count - 1);
for (size_t n = 0; n < num_words; n++){
this->sampled_z_(word_indices[n]) = sampled_z(n);
this->beta_counts_(this->sampled_z_(word_indices[n]), this->word_ids_(word_indices[n])) += 1;
this->beta_counts_last_(sampled_z2(n), this->word_ids_(word_indices[n])) += 1;
}
// Calculates theta counts
this->theta_counts_.col(d) = calc_topic_counts(sampled_z, this->num_topics_);
this->theta_counts_last_.col(d) = calc_topic_counts(sampled_z2, this->num_topics_);
// Resets all used data structures
current_Z.reset();
proposed_Z.reset();
accepted_Z.reset();
sampled_z.reset();
sampled_z2.reset();
if (this->verbose_ >= 1)
cout << "doc " << d + 1 << " accepted # " << acceptance_count << " random walks # " << num_random_walks << endl;
} // END For each document
if (this->verbose_ >= 1){
cout << endl << "Total execution time: " << timer.get_time() << "s" << endl;
cout << "Model perplexity: " << calc_corpus_perplexity() << endl; // using beta_counts_ and theta_counts_
cout << "Log partition probability: " << calc_ln_corpus_partition_probality() << endl;
}
}