int main(int argc, char *argv[]){
if(argc < 3) {
fprintf(stderr, "Please add drop and corrupt rates\n");
exit(0);
}
setRates(atoi(argv[1]), atoi(argv[2]));
//begin cleint
initServer();
printf("Server has begun.\n");
char buffer[PACKET_SIZE];
char testbuffer[PACKET_SIZE];
strcpy(testbuffer, "Testdatafromserver.");
int n = 0;
while(1){
//check for command comming in
checkCommands(buffer);
int rsend = (rand() % 100)+1;
if(n == 0 && rsend > 95){
//n = dataLinkSend(testbuffer, strlen(testbuffer));
}
}
return(1);
}
CTimer::CTimer()
{
m_FPSCountTime = m_LoopPS = m_LPS = m_FPS = 0;
m_SyncCount = m_LoopCount = m_LogicCount = m_FrameCount = 0;
m_FrameCountSkip = m_SkipPS = 0;
m_FrameSkip = false;
m_Ticks = 0;
setRates(DEFAULT_LPS, DEFAULT_FPS, DEFAULT_SYNC);
#if defined(WIZ)
WIZ_ptimer_init();
#endif
m_SyncStartTime = m_LoopStartTime = timerTicks();
g_pLogFile->textOut(GREEN, true, "Starting timer driver...\n");
}
double RateMeyerHaeseler::optimizeParameters(double epsilon) {
assert(phylo_tree);
double tree_lh = phylo_tree->computeLikelihood();
DoubleVector prev_rates;
getRates(prev_rates);
if (empty()) {
if (rate_file) {
readRateFile(rate_file);
phylo_tree->clearAllPartialLH();
return phylo_tree->optimizeAllBranches();
}
initializeRates();
}
optimizeRates();
phylo_tree->clearAllPartialLH();
stringstream best_tree_string;
phylo_tree->printTree(best_tree_string, WT_BR_LEN + WT_TAXON_ID);
double new_tree_lh = phylo_tree->optimizeAllBranches(1);
//double new_tree_lh = phylo_tree->computeLikelihood();
if (new_tree_lh < tree_lh - 1e-5) {
cout << "Worse likelihood (" << new_tree_lh << "), roll back site rates..." << endl;
setRates(prev_rates);
phylo_tree->rollBack(best_tree_string);
//phylo_tree->clearAllPartialLh();
new_tree_lh = phylo_tree->computeLikelihood();
//cout << "Backup log-likelihood: " << new_tree_lh << endl;
new_tree_lh = tree_lh;
}
return new_tree_lh;
}
void CTimer::setFPS( const int framerate )
{
setRates(DEFAULT_LPS, framerate, DEFAULT_SYNC);
}