/*! @brief Simplifies a vector of strings
@param input the vector of strings to be simplified
@param ouput the vector that will be updated to contain the simplified names
*/
void NUActionatorsData::simplifyNames(const vector<string>& input, vector<string>& output)
{
vector<string> simplifiednames;
for (unsigned int i=0; i<input.size(); i++)
simplifiednames.push_back(simplifyName(input[i]));
output = simplifiednames;
}
void oneFile(char *fileName, FILE *f)
/* Parse one input file and add to tab separated output. */
{
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char chromName[128];
char *row[9];
splitPath(fileName, NULL, chromName, NULL);
printf("Parsing %s\n", fileName);
while (lineFileRow(lf, row))
{
fprintf(f, "%s\t", chromName);
fprintf(f, "%d\t", lineFileNeedNum(lf, row, 1)-1);
fprintf(f, "%d\t", lineFileNeedNum(lf, row, 2));
fprintf(f, "%s\t", simplifyName(row[7]));
fprintf(f, "%d\t", milliScore(atof(row[6])));
fprintf(f, "%s\t", row[4]);
fprintf(f, "%s\t", row[6]);
fprintf(f, "%s\t", row[7]);
fprintf(f, "%s\n", row[8]);
}
lineFileClose(&lf);
}
