void DisplayWindow::BuildConnections()
{
connect(m_qpbLike, SIGNAL(clicked()), this, SLOT(likeIt()));
connect(m_qpbComment, SIGNAL(clicked()), this, SLOT(toComment()));
connect(m_qpbForward, SIGNAL(clicked()), this, SLOT(forwardIt()));
connect(m_qpbUser, SIGNAL(clicked()), this, SLOT(toProfile()));
}
void CommentWindow::BuildSingle(int i)
{
m_qwSingleComment = new QWidget(m_qwComment);
m_qwSingleComment->setObjectName("singleComment");
m_qwSingleComment->setMinimumWidth(SINGLECOMMENT_W*xscale);
m_qwSingleComment->setMinimumHeight( SINGLECOMMENT_H*yscale);
string comDate = m_mvModel.m_vComments[i].m_sDate;
string date = comDate.substr(0,comDate.find_first_of(' '));
string time = comDate.substr(comDate.find_first_of(' '));
string year = date.substr(0, date.find_first_of('-'));
string remainDate = date.substr(date.find_first_of('-')+1);
string month = remainDate.substr(0,remainDate.find_first_of('-'));
string day = remainDate.substr(remainDate.find_first_of('-')+1);
m_qwDate = new QWidget(m_qwSingleComment);
m_qwDate->setObjectName("date");
m_qwDate->setFixedSize(DATE_W*xscale, DATE_H*yscale);
m_qlCommentMon = new QLabel(QString(toMonth(month).c_str()), m_qwDate);
m_qlCommentMon->setObjectName("month");
m_qlCommentMon->setAlignment(Qt::AlignCenter);
m_qlCommentDay = new QLabel(QString(day.c_str()), m_qwDate);
m_qlCommentDay->setObjectName("day");
m_qlCommentDay->setAlignment(Qt::AlignCenter);
QVBoxLayout *dateLayout = new QVBoxLayout();
dateLayout->addWidget(m_qlCommentMon);
dateLayout->addWidget(m_qlCommentDay);
m_qwDate->setLayout(dateLayout);
m_qpbUsername = new QPushButton(m_mvModel.m_vComments[i].m_sCosID.c_str(), m_qwSingleComment);
m_qpbUsername->setObjectName("toProfile");
m_qpbUsername->setFixedSize(TOPROFILE_W*xscale, TOPROFILE_H*yscale);
connect(m_qpbUsername, SIGNAL(clicked()), this, SLOT(toProfile()));
m_qlCommentCont = new QLabel(m_mvModel.m_vComments[i].m_sContains.c_str(), m_qwSingleComment);
m_qlCommentCont->setObjectName("commentContent");
m_qlCommentCont->setFixedSize(COMMENTCONTENT_W*xscale, COMMENTCONTENT_H*yscale);
m_qlCommentTime = new QLabel(time.c_str(), m_qwSingleComment);
m_qlCommentTime->setObjectName("commentTime");
m_qlCommentTime->setFixedSize(COMMENTTIME_W*xscale, COMMENTTIME_H*yscale);
QVBoxLayout *commentLayout = new QVBoxLayout();
commentLayout->addWidget(m_qpbUsername);
commentLayout->addWidget(m_qlCommentCont);
commentLayout->addStretch();
commentLayout->addWidget(m_qlCommentTime);
QHBoxLayout *layout = new QHBoxLayout();
layout->addWidget(m_qwDate,0,Qt::AlignTop);
layout->addSpacing(SPACE);
layout->addLayout(commentLayout);
layout->addStretch();
m_qwSingleComment->setLayout(layout);
}
//---------------------------------------------------------------
HAlignandum makeProfile(
const HAlignandum & seqa,
const HAlignment & map_seqa2profile,
const HAlignandum & seqb,
const HAlignment & map_seqb2profile )
{
debug_func_cerr(5);
HProfile profile = toProfile(makeProfile(
std::max( map_seqa2profile->getColTo(),
map_seqb2profile->getColTo() )));
profile->add( seqa, map_seqa2profile );
profile->add( seqb, map_seqb2profile );
return profile;
}
//---------------------------------------------------------------
HAlignandum makeProfile(
const HMultAlignment & mali,
const HAlignandumVector & sequences )
{
debug_func_cerr(5);
if (sequences->size() != mali->getNumSequences())
throw AlignlibException( "ImplProfile.cpp: number of sequences given does not match number of sequences in MultAlignment");
HProfile profile = toProfile(makeProfile( mali->getLength() ));
for (int x = 0; x < mali->getNumSequences(); ++x)
profile->add( (*sequences)[x], (*mali)[x], true );
return profile;
}
std::string calculateConservation(
const HMultipleAlignment & mali,
const Frequency min_frequency )
{
debug_func_cerr(5);
const HEncoder encoder(getDefaultEncoder());
HProfile profile( toProfile(
(makeProfile( mali ))));
profile->prepare();
const HFrequencyMatrix frequencies(profile->getFrequencyMatrix());
Position length = frequencies->getNumRows();
Residue width = frequencies->getNumCols();
char * buffer = new char[length + 1];
for (Position col = 0; col < length; col++)
{
Frequency max_frequency = min_frequency;
Frequency f;
Residue max_residue = encoder->getGapCode();
const Frequency * fcolumn = frequencies->getRow(col);
for (Position row = 0; row < width; row++)
{
if ( (f = fcolumn[row]) >= max_frequency )
{
max_frequency = f;
max_residue = row;
}
}
buffer[col] = encoder->decode( max_residue );
}
buffer[length] = '\0';
std::string seq(buffer);
delete [] buffer;
return seq;
}
