void Mask::LoadMaskAndAbortOnFailure(const char *maskFileName)
{
int retval=SetMask (maskFileName);
if (retval)
exit (EXIT_FAILURE);
validateMask();
}
void Mask::UpdateBeadFindOutcomes( Region &wholeChip, char const *maskFileName, bool not_single_beadfind, int update_stats, char const *maskStatsName)
{
// write the beadmask in maskPtr to file maskFileName
if (!update_stats)
{
DumpStats (wholeChip, (char *)maskStatsName, not_single_beadfind);
}
WriteRaw (maskFileName);
validateMask();
}
vector getFileMask(WaveFile* waveFile, vector wave, int len, char marker = NULL)
{
vector mask;
ListChunk * listLablChunk = NULL;
ListChunk * listLtxtChunk = NULL;
qDebug() << "listCount " << waveFile->listCount << LOG_DATA;
for (int i=0; i<waveFile->listCount; i++)
{
ListChunk * listChunk = &(waveFile->listChunks[i]);
if (listChunk == NULL) continue;
qDebug() << "listChunk->lablCount " << listChunk->lablCount << LOG_DATA;
if (listChunk->lablChunks != NULL && listChunk->lablCount > 0)
{
listLablChunk = listChunk;
}
qDebug() << "listChunk->ltxtCount " << listChunk->ltxtCount << LOG_DATA;
if (listChunk->ltxtChunks != NULL && listChunk->ltxtCount > 0)
{
listLtxtChunk = listChunk;
}
}
bool tryFileData = (waveFile->cueChunk != NULL)
&& (littleEndianBytesToUInt16(waveFile->cueChunk->cuePointsCount) > 0)
&& (listLtxtChunk != NULL)
&& (listLtxtChunk->ltxtChunks != NULL)
&& (listLtxtChunk->ltxtCount > 0)
&& (listLablChunk != NULL)
&& (listLablChunk->lablChunks != NULL)
&& (listLablChunk->lablCount > 0);
if (tryFileData)
{
qDebug() << "tryFileData" << LOG_DATA;
vector mask_from_file = readMaskFromFile(waveFile, wave.x, marker);
vector mask_norm = normalizev(mask_from_file, MASK_MIN, MASK_MAX);
mask = vector_resize(mask_norm, len);
freev(mask_norm);
freev(mask_from_file);
qDebug() << "vector_resize" << LOG_DATA;
}
if (!tryFileData || !validateMask(mask)) {
qDebug() << "!tryFileData" << LOG_DATA;
mask = onesv(len);
}
return mask;
}