void c_hoice(){
var_in(); if (chosen == 1) return ;
choice = strcmp (in1, c_lear);
if (choice == 0) {system("clear"); chosen = 1; return ;}
else { choice = strcmp (in1, e_nd);
if (choice == 0) exit(1);
else { choice = strcmp (in1, V_AR);
if (choice == 0) {VAR(); chosen = 1; return ;}
}}
} // choice 함수
void c_hoice(){
str_in1 = strlen(in1); // in1, in2, in3 길이 재기
str_in2 = strlen(in2);
str_in3 = strlen(in3);
var_in(); if (chosen == 1) return ; //var_in 함수 에서 나왔던 chosen이 1이면(= 변수 1개가 정의됬으면) choice함수 종료
else // var_in함수에서 변수가 정의 되지 않았으면
{
if (str_in1 == 1) //in1에 입력받은 문자가 1 자리인 경우
{ if (str_in2 == 0) // 그뒤로 아무것도 입력받지 않은경우
{
if (in1[0] >= 'A' && in1[0] <= 'Z') //in1에 대문자가 들어온 경우
{
for (int i = 0; i <= 9; i ++)
{
if (in1[0] == var[i]) //in1에 입력된 문자가 var에 선언된 변수 이름과 같은경우
{
begin_chosen = i;
printf(" = ");
for(int i = 0 ; i <= 49; i++){
if(var_var[begin_chosen][i] == '.')
{temp_var_d = i + 1; break;}
else var_var_j[begin_chosen][i] = var_var[begin_chosen][i];}
if(var_var[begin_chosen][50] == '.')
temp_var_d = 51;
if(temp_var_d != 0){
for(int i = 0; i <= 8; temp_var_d++, i++)
var_var_s[begin_chosen][i] = var_var[begin_chosen][temp_var_d];
}
p = strlen(var_var_s[begin_chosen]);
comma(var_var_j[begin_chosen]);
if (p != 0){
printf(".");
comma(var_var_s[begin_chosen]);}
printf("\n");
chosen = 1;
return;
}
else // in1이 var에 선언된 변수가 아닌 경우
begin_chosen = 100;
}
}
else if (in1[0] >= 'a' && in1[0] <= 'z') // 소문자인 경우
{
in1[0] -= 32; // 대문자로 바꾸기
for (int i = 0; i <= 9; i ++)
{
if (in1[0] == var[i])
{
begin_chosen = i;
printf(" = ");
for(int i = 0 ; i <= 49; i++){
if(var_var[begin_chosen][i] == '.')
{temp_var_d = i + 1; break;}
else var_var_j[begin_chosen][i] = var_var[begin_chosen][i];}
if(var_var[begin_chosen][50] == '.')
temp_var_d = 51;
if(temp_var_d != 0){
for(int i = 0; i <= 8; temp_var_d++, i++)
var_var_s[begin_chosen][i] = var_var[begin_chosen][temp_var_d];
}
p = strlen(var_var_s[begin_chosen]);
comma(var_var_j[begin_chosen]);
if (p != 0){
printf(".");
comma(var_var_s[begin_chosen]);}
printf("\n");
chosen = 1;
return;
}
else
begin_chosen = 100;
}
}
}}
else
{
choice = strcmp (in1, c_lear);
if (choice == 0) {system("clear"); chosen = 1; return ;}
else { choice = strcmp (in1, e_nd);
if (choice == 0) exit(1);
else { choice = strcmp (in1, V_AR);
if (choice == 0) {VAR(); chosen = 1; return ;}
else { choice = strcmp (in1, s_ave);
if (choice == 0) {save(); chosen = 1; return;}
else { choice = strcmp (in1, l_oad);
if (choice == 0) {load(); chosen = 1; return;}
}}}}
}
if (begin_chosen == 100)
{printf(" = undefined."); chosen = 1; return;}
}
} // choice 함수
int cnt(void)
{
std::shared_ptr<group_connectometry_analysis> database(new group_connectometry_analysis);
std::cout << "reading connectometry db" <<std::endl;
if(!database->load_database(po.get("source").c_str()))
{
std::cout << "invalid database format" << std::endl;
return 1;
}
std::shared_ptr<group_connectometry> vbc(new group_connectometry(0,database,po.get("source").c_str(),false));
vbc->setAttribute(Qt::WA_DeleteOnClose);
vbc->show();
//vbc->hide();
if(!po.has("demo"))
{
std::cout << "please assign demographic file" << std::endl;
return 1;
}
std::string error_msg;
if(!vbc->load_demographic_file(po.get("demo").c_str(),error_msg))
{
std::cout << error_msg << std::endl;
return 1;
}
if(po.has("missing_value"))
{
vbc->ui->missing_data_checked->setChecked(true);
vbc->ui->missing_value->setValue(po.get("missing_value",9999));
std::cout << "missing value=" << vbc->ui->missing_value->value() << std::endl;
}
if(!po.has("voi") || !po.has("variable_list"))
{
std::cout << "please assign --voi and --variable_list" << std::endl;
return 1;
}
{
std::string var_text = po.get("variable_list");
std::replace(var_text.begin(),var_text.end(),',',' ');
std::istringstream var_in(var_text);
std::vector<int> variable_list(
(std::istream_iterator<int>(var_in)),
(std::istream_iterator<int>()));
for(int i = 0;i < vbc->ui->variable_list->count();++i)
vbc->ui->variable_list->item(i)->setCheckState(Qt::Unchecked);
std::cout << "variables=";
int voi_index = po.get("voi",0);
int voi_sel = -1;
std::string voi_text;
for(int i = 0;i < variable_list.size();++i)
{
int index = variable_list[i];
if(index >= vbc->ui->variable_list->count())
{
std::cout << "Invalid number in the variable_list:" << index << std::endl;
return 1;
}
if(index == voi_index)
{
voi_sel = vbc->ui->variable_list->count();
voi_text = vbc->ui->variable_list->item(index)->text().toStdString();
}
vbc->ui->variable_list->item(index)->setCheckState(Qt::Checked);
if(i)
std::cout << ",";
std::cout << vbc->ui->variable_list->item(index)->text().toStdString();
}
std::cout << std::endl;
if(voi_sel == -1)
{
std::cout << "variable of interest is not included in the variable list" << std::endl;
return 1;
}
vbc->on_variable_list_clicked(QModelIndex());
vbc->ui->foi->update();
vbc->ui->foi->setCurrentText(voi_text.c_str());
std::cout << "study variable=" << vbc->ui->foi->currentText().toStdString() << std::endl;
}
vbc->ui->threshold->setValue(po.get("t_threshold",float(vbc->ui->threshold->value())));
std::cout << "t_threshold=" << vbc->ui->threshold->value() << std::endl;
vbc->ui->seed_count->setValue(po.get("seed_count",10000));
std::cout << "seed_count=" << vbc->ui->seed_count->value() << std::endl;
vbc->ui->permutation_count->setValue(po.get("permutation",int(2000)));
std::cout << "permutation=" << vbc->ui->permutation_count->value() << std::endl;
vbc->ui->multithread->setValue(po.get("thread_count",int(std::thread::hardware_concurrency())));
std::cout << "thread=" << vbc->ui->multithread->value() << std::endl;
vbc->ui->track_trimming->setValue(po.get("trim",1));
std::cout << "trim=" << vbc->ui->track_trimming->value() << std::endl;
if(po.get("normalized_qa",int(0)))
{
std::cout << "normalized qa" << std::endl;
vbc->ui->normalize_qa->setChecked(true);
}
if(po.has("fdr_threshold"))
{
vbc->ui->rb_fdr->setChecked(true);
vbc->ui->fdr_threshold->setValue(po.get("fdr_threshold",0.05f));
std::cout << "fdr_threshold=" << vbc->ui->fdr_threshold->value() << std::endl;
}
else
{
vbc->ui->rb_length->setChecked(true);
vbc->ui->length_threshold->setValue(po.get("length_threshold",int(40)));
std::cout << "length_threshold=" << vbc->ui->length_threshold->value() << std::endl;
}
// check rois
{
const int total_count = 18;
char roi_names[total_count][5] = {"roi","roi2","roi3","roi4","roi5","roa","roa2","roa3","roa4","roa5","end","end2","seed","ter","ter2","ter3","ter4","ter5"};
unsigned char type[total_count] = {0,0,0,0,0,1,1,1,1,1,2,2,3,4,4,4,4,4};
for(int index = 0;index < total_count;++index)
if (po.has(roi_names[index]))
{
ROIRegion roi(vbc->vbc->handle);
if(!load_region(vbc->vbc->handle,roi,po.get(roi_names[index])))
return 1;
vbc->add_new_roi(po.get(roi_names[index]).c_str(),
po.get(roi_names[index]).c_str(),
roi.get_region_voxels_raw(),type[index]);
std::cout << roi_names[index] << "=" << po.get(roi_names[index]) << std::endl;
vbc->ui->roi_user_defined->setChecked(true);
vbc->ui->roi_whole_brain->setChecked(false);
}
}
vbc->on_run_clicked();
std::cout << vbc->vbc->report << std::endl;
std::cout << "running connectometry" << std::endl;
vbc->vbc->wait();
std::cout << "output results" << std::endl;
vbc->calculate_FDR();
std::cout << "close GUI" << std::endl;
vbc->close();
vbc.reset();
return 0;
}
void c_hoice(){
str_in1 = strlen(in1);
str_in2 = strlen(in2);
str_in3 = strlen(in3);
var_in(); if (chosen == 1) return ;
else
{
if (str_in1 == 1)
{ if (str_in2 == 0)
{
if (in1[0] >= 'A' && in1[0] <= 'Z')
{
for (int i = 0; i <= 9; i ++)
{
if (in1[0] == var[i])
{
begin_chosen = i;
printf(" = "); comma(var_var[begin_chosen]); chosen = 1; return;
}
else
begin_chosen = 100;
}
}
else if (in1[0] >= 'a' && in1[0] <= 'z')
{
in1[0] -= 32;
for (int i = 0; i <= 9; i ++)
{
if (in1[0] == var[i])
{
begin_chosen = i;
printf(" = "); comma(var_var[begin_chosen]); chosen = 1; return;
}
else
begin_chosen = 100;
}
}
}}
else
{
choice = strcmp (in1, c_lear);
if (choice == 0) {system("clear"); chosen = 1; return ;}
else { choice = strcmp (in1, e_nd);
if (choice == 0) exit(1);
else { choice = strcmp (in1, V_AR);
if (choice == 0) {VAR(); chosen = 1; return ;}
else { choice = strcmp (in1, s_ave);
if (choice == 0) {save(); chosen = 1; return;}
else { choice = strcmp (in1, l_oad);
if (choice == 0) {load(); chosen = 1; return;}
}}}}
}
if (begin_chosen == 100)
{printf(" = undefined."); chosen = 1; return;}
}
} // choice 함수
