rc_t vdb_info( Vector * schema_list, dump_format_t format, const VDBManager *mgr,
const char * acc_or_path, struct num_gen * rows )
{
rc_t rc = 0;
VSchema * schema = NULL;
vdh_parse_schema( mgr, &schema, schema_list );
if ( format == df_sql )
rc = vdb_info_print_sql_header( acc_or_path );
if ( rows != NULL && !num_gen_empty( rows ) )
{
const struct num_gen_iter * iter;
rc = num_gen_iterator_make( rows, &iter );
if ( rc == 0 )
{
int64_t max_row;
rc = num_gen_iterator_max( iter, &max_row );
if ( rc == 0 )
{
int64_t id;
uint8_t digits = digits_of( max_row );
while ( rc == 0 && num_gen_iterator_next( iter, &id, &rc ) )
{
char acc[ 64 ];
size_t num_writ;
rc_t rc1 = -1;
switch ( digits )
{
case 1 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%ld", acc_or_path, id ); break;
case 2 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.02ld", acc_or_path, id ); break;
case 3 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.03ld", acc_or_path, id ); break;
case 4 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.04ld", acc_or_path, id ); break;
case 5 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.05ld", acc_or_path, id ); break;
case 6 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.06ld", acc_or_path, id ); break;
case 7 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.07ld", acc_or_path, id ); break;
case 8 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.08ld", acc_or_path, id ); break;
case 9 : rc1 = string_printf ( acc, sizeof acc, &num_writ, "%s%.09ld", acc_or_path, id ); break;
}
if ( rc1 == 0 )
rc = vdb_info_1( schema, format, mgr, acc, acc_or_path );
}
}
num_gen_iterator_destroy( iter );
}
}
else
rc = vdb_info_1( schema, format, mgr, acc_or_path, acc_or_path );
if ( schema != NULL )
VSchemaRelease( schema );
return rc;
}
static rc_t vdb_fastq_database( const p_dump_context ctx,
const VDBManager *mgr,
fastq_ctx * fctx )
{
const VDatabase * db;
VSchema *schema = NULL;
rc_t rc;
vdh_parse_schema( mgr, &schema, &(ctx->schema_list) );
rc = VDBManagerOpenDBRead( mgr, &db, schema, ctx->path );
DISP_RC( rc, "VDBManagerOpenDBRead() failed" );
if ( rc == 0 )
{
bool table_defined = ( ctx->table != NULL );
if ( !table_defined )
table_defined = vdh_take_this_table_from_db( ctx, db, "SEQUENCE" );
if ( table_defined )
{
const VTable * tbl;
rc = VDatabaseOpenTableRead( db, &tbl, ctx->table );
DISP_RC( rc, "VDatabaseOpenTableRead() failed" );
if ( rc == 0 )
{
rc = vdb_fastq_tbl( ctx, tbl, fctx );
VTableRelease( tbl );
}
}
else
{
LOGMSG( klogInfo, "opened as vdb-database, but no table found/defined" );
ctx->usage_requested = true;
}
VDatabaseRelease( db );
}
VSchemaRelease( schema );
return rc;
}
static rc_t vdb_fastq_table( const p_dump_context ctx,
const VDBManager *mgr,
fastq_ctx * fctx )
{
const VTable * tbl;
VSchema * schema = NULL;
rc_t rc;
vdh_parse_schema( mgr, &schema, &(ctx->schema_list) );
rc = VDBManagerOpenTableRead( mgr, &tbl, schema, ctx->path );
DISP_RC( rc, "VDBManagerOpenTableRead() failed" );
if ( rc == 0 )
{
rc = vdb_fastq_tbl( ctx, tbl, fctx );
VTableRelease( tbl );
}
VSchemaRelease( schema );
return rc;
}
