Exemplo n.º 1
0
 void Database::flushFiles( bool sync ) {
     assertDbAtLeastReadLocked(this);
     for( vector<MongoDataFile*>::iterator i = _files.begin(); i != _files.end(); i++ ) { 
         MongoDataFile *f = *i;
         f->flush(sync);
     }
 }
Exemplo n.º 2
0
    MongoDataFile* Database::suitableFile( const char *ns, int sizeNeeded, bool preallocate, bool enforceQuota ) {

        // check existing files
        for ( int i=numFiles()-1; i>=0; i-- ) {
            MongoDataFile* f = getFile( i );
            if ( f->getHeader()->unusedLength >= sizeNeeded ) {
                // we don't enforce the quota on "special" namespaces as that could lead to problems -- e.g.
                // rejecting an index insert after inserting the main record.
                if( cmdLine.quota && enforceQuota && i > cmdLine.quotaFiles && !NamespaceString::special(ns) )
                    ;
                else
                    return f;
            }
        }

        if( cmdLine.quota && enforceQuota && numFiles() >= cmdLine.quotaFiles && !NamespaceString::special(ns) )
            uasserted(12501, "quota exceeded");

        // allocate files until we either get one big enough or hit maxSize
        for ( int i = 0; i < 8; i++ ) {
            MongoDataFile* f = addAFile( sizeNeeded, preallocate );

            if ( f->getHeader()->unusedLength >= sizeNeeded )
                return f;

            if ( f->getHeader()->fileLength >= MongoDataFile::maxSize() ) // this is as big as they get so might as well stop
                return f;
        }

        uasserted(14810, "couldn't allocate space (suitableFile)"); // callers don't check for null return code
        return 0;
    }
Exemplo n.º 3
0
    void touchNs( const std::string& ns ) { 
        std::vector< touch_location > ranges;
        Client::ReadContext ctx(ns);
        {

            NamespaceDetails *nsd = nsdetails(ns.c_str());
            uassert( 16154, "namespace does not exist", nsd );
            
            for( DiskLoc L = nsd->firstExtent; !L.isNull(); L = L.ext()->xnext )  {
                MongoDataFile* mdf = cc().database()->getFile( L.a() );
                massert( 16238, "can't fetch extent file structure", mdf );
                touch_location tl;
                tl.fd = mdf->getFd();
                tl.offset = L.getOfs();
                tl.ext = L.ext();
                tl.length = tl.ext->length;
                
                ranges.push_back(tl);                
            }

        }
        LockMongoFilesShared lk;
        Lock::TempRelease tr;
        std::string progress_msg = "touch " + ns + " extents";
        ProgressMeterHolder pm( cc().curop()->setMessage( progress_msg.c_str() , ranges.size() ) );
        for ( std::vector< touch_location >::iterator it = ranges.begin(); it != ranges.end(); ++it ) {
            touch_pages( it->fd, it->offset, it->length, it->ext );
            pm.hit();
            killCurrentOp.checkForInterrupt(false);
        }
        pm.finished();
    }
Exemplo n.º 4
0
    DiskLoc _repairExtent( Database* db , string ns, bool forward , DiskLoc eLoc ){
        LogIndentLevel lil;
        
        if ( eLoc.getOfs() <= 0 ){
            error() << "invalid extent ofs: " << eLoc.getOfs() << endl;
            return DiskLoc();
        }
        

        MongoDataFile * mdf = db->getFile( eLoc.a() );

        Extent * e = mdf->debug_getExtent( eLoc );
        if ( ! e->isOk() ){
            warning() << "Extent not ok magic: " << e->magic << " going to try to continue" << endl;
        }
        
        log() << "length:" << e->length << endl;
        
        LogIndentLevel lil2;
        
        DiskLoc loc = forward ? e->firstRecord : e->lastRecord;
        while ( ! loc.isNull() ){
            if ( loc.getOfs() <= 0 ){
                error() << "offset is 0 for record which should be impossible" << endl;
                break;
            }
            log() << loc << endl;
            Record* rec = loc.rec();
            log() << loc.obj() << endl;
            loc = forward ? rec->getNext( loc ) : rec->getPrev( loc );
        }
        return forward ? e->xnext : e->xprev;
        
    }
Exemplo n.º 5
0
    MongoDataFile* Database::suitableFile( const char *ns, int sizeNeeded, bool preallocate, bool enforceQuota ) {

        // check existing files
        for ( int i=numFiles()-1; i>=0; i-- ) {
            MongoDataFile* f = getFile( i );
            if ( f->getHeader()->unusedLength >= sizeNeeded ) {
                if ( fileIndexExceedsQuota( ns, i-1, enforceQuota ) ) // NOTE i-1 is the value used historically for this check.
                    ;
                else
                    return f;
            }
        }

        if ( fileIndexExceedsQuota( ns, numFiles(), enforceQuota ) )
            uasserted(12501, "quota exceeded");

        // allocate files until we either get one big enough or hit maxSize
        for ( int i = 0; i < 8; i++ ) {
            MongoDataFile* f = addAFile( sizeNeeded, preallocate );

            if ( f->getHeader()->unusedLength >= sizeNeeded )
                return f;

            if ( f->getHeader()->fileLength >= MongoDataFile::maxSize() ) // this is as big as they get so might as well stop
                return f;
        }

        uasserted(14810, "couldn't allocate space (suitableFile)"); // callers don't check for null return code
        return 0;
    }
Exemplo n.º 6
0
    // ran at startup.
    static void repairDatabasesAndCheckVersion() {
        //        LastError * le = lastError.get( true );
        Client::GodScope gs;
        log(1) << "enter repairDatabases (to check pdfile version #)" << endl;

        //verify(checkNsFilesOnLoad);
        checkNsFilesOnLoad = false; // we are mainly just checking the header - don't scan the whole .ns file for every db here.

        Lock::GlobalWrite lk;
        vector< string > dbNames;
        getDatabaseNames( dbNames );
        for ( vector< string >::iterator i = dbNames.begin(); i != dbNames.end(); ++i ) {
            string dbName = *i;
            log(1) << "\t" << dbName << endl;
            Client::Context ctx( dbName );
            MongoDataFile *p = cc().database()->getFile( 0 );
            DataFileHeader *h = p->getHeader();
            if ( !h->isCurrentVersion() || forceRepair ) {

                if( h->version <= 0 ) {
                    uasserted(14026, 
                      str::stream() << "db " << dbName << " appears corrupt pdfile version: " << h->version 
							        << " info: " << h->versionMinor << ' ' << h->fileLength);
                }

                log() << "****" << endl;
                log() << "****" << endl;
                log() << "need to upgrade database " << dbName << " with pdfile version " << h->version << "." << h->versionMinor << ", "
                      << "new version: " << PDFILE_VERSION << "." << PDFILE_VERSION_MINOR << endl;
                if ( shouldRepairDatabases ) {
                    // QUESTION: Repair even if file format is higher version than code?
                    log() << "\t starting upgrade" << endl;
                    string errmsg;
                    verify( doDBUpgrade( dbName , errmsg , h ) );
                }
                else {
                    log() << "\t Not upgrading, exiting" << endl;
                    log() << "\t run --upgrade to upgrade dbs, then start again" << endl;
                    log() << "****" << endl;
                    dbexit( EXIT_NEED_UPGRADE );
                    shouldRepairDatabases = 1;
                    return;
                }
            }
            else {
                Database::closeDatabase( dbName.c_str(), dbpath );
            }
        }

        log(1) << "done repairDatabases" << endl;

        if ( shouldRepairDatabases ) {
            log() << "finished checking dbs" << endl;
            cc().shutdown();
            dbexit( EXIT_CLEAN );
        }

        checkNsFilesOnLoad = true;
    }
Exemplo n.º 7
0
    // todo: this is called a lot. streamline the common case
    MongoDataFile* Database::getFile( int n, int sizeNeeded , bool preallocateOnly) {
        assert(this);
        DEV assertDbAtLeastReadLocked(this);

        namespaceIndex.init();
        if ( n < 0 || n >= DiskLoc::MaxFiles ) {
            out() << "getFile(): n=" << n << endl;
            massert( 10295 , "getFile(): bad file number value (corrupt db?): run repair", false);
        }
        DEV {
            if ( n > 100 ) {
                out() << "getFile(): n=" << n << endl;
            }
        }
        MongoDataFile* p = 0;
        if ( !preallocateOnly ) {
            while ( n >= (int) _files.size() ) {
                assert(this);
                if( !Lock::isWriteLocked(this->name) ) {
                    log() << "error: getFile() called in a read lock, yet file to return is not yet open" << endl;
                    log() << "       getFile(" << n << ") _files.size:" <<_files.size() << ' ' << fileName(n).string() << endl;
                    log() << "       context ns: " << cc().ns() << " openallfiles:" << _openAllFiles << endl;
                    assert(false);
                }
                _files.push_back(0);
            }
            p = _files[n];
        }
        if ( p == 0 ) {
            assertDbWriteLocked(this);
            boost::filesystem::path fullName = fileName( n );
            string fullNameString = fullName.string();
            p = new MongoDataFile(n);
            int minSize = 0;
            if ( n != 0 && _files[ n - 1 ] )
                minSize = _files[ n - 1 ]->getHeader()->fileLength;
            if ( sizeNeeded + DataFileHeader::HeaderSize > minSize )
                minSize = sizeNeeded + DataFileHeader::HeaderSize;
            try {
                p->open( fullNameString.c_str(), minSize, preallocateOnly );
            }
            catch ( AssertionException& ) {
                delete p;
                throw;
            }
            if ( preallocateOnly )
                delete p;
            else
                _files[n] = p;
        }
        return preallocateOnly ? 0 : p;
    }
Exemplo n.º 8
0
    bool Database::openExistingFile( int n ) { 
        assert(this);
        Lock::assertWriteLocked(name);
        {
            // must not yet be visible to others as we aren't in the db's write lock and 
            // we will write to _files vector - thus this assert.
            bool loaded = dbHolder().__isLoaded(name, path);
            assert( !loaded );
        }
        // additionally must be in the dbholder mutex (no assert for that yet)

        // todo: why here? that could be bad as we may be read locked only here
        namespaceIndex.init();

        if ( n < 0 || n >= DiskLoc::MaxFiles ) {
            massert( 15924 , str::stream() << "getFile(): bad file number value " << n << " (corrupt db?): run repair", false);
        }

        {
            if( n < (int) _files.size() && _files[n] ) {
                dlog(2) << "openExistingFile " << n << " is already open" << endl;
                return true;
            }
        }

        {
            boost::filesystem::path fullName = fileName( n );
            string fullNameString = fullName.string();
            MongoDataFile *df = new MongoDataFile(n);
            try {
                if( !df->openExisting( fullNameString.c_str() ) ) { 
                    delete df;
                    return false;
                }
            }
            catch ( AssertionException& ) {
                delete df;
                throw;
            }
            while ( n >= (int) _files.size() ) {
                _files.push_back(0);
            }
            _files[n] = df;
        }

        return true;
    }
Exemplo n.º 9
0
    void run() {
        string dbname = "unittest_ex";

        string c1 = dbname + ".x1";
        string c2 = dbname + ".x2";

        {
            DBDirectClient db;
            db.dropDatabase( dbname );
        }

        dblock mylock;
        Client::Context cx( dbname );

        bool isnew;
        Database * d = dbHolderW().getOrCreate( dbname , dbpath , isnew );
        assert( d );

        int big = 10 * 1024;
        //int small = 1024;

        unsigned long long l = 0;
        int n = 0;
        while ( 1 ) {
            n++;
            if( n == 5 && sizeof(void*)==4 )
                break;
            MongoDataFile * f = d->addAFile( big , false );
            //cout << f->length() << ' ' << n << endl;
            if ( f->length() == l )
                break;
            l = f->length();
        }

        int start = d->numFiles();
        for ( int i=0; i<start; i++ )
            d->allocExtent( c1.c_str() , d->getFile( i )->getHeader()->unusedLength , false, false );
        ASSERT_EQUALS( start , d->numFiles() );

        {
            DBDirectClient db;
            db.dropDatabase( dbname );
        }
    }
Exemplo n.º 10
0
    MongoDataFile* Database::getFile( int n, int sizeNeeded , bool preallocateOnly) {
        assert(this);

        namespaceIndex.init();
        if ( n < 0 || n >= DiskLoc::MaxFiles ) {
            out() << "getFile(): n=" << n << endl;
            massert( 10295 , "getFile(): bad file number value (corrupt db?): run repair", false);
        }
        DEV {
            if ( n > 100 )
                out() << "getFile(): n=" << n << "?" << endl;
        }
        MongoDataFile* p = 0;
        if ( !preallocateOnly ) {
            while ( n >= (int) files.size() )
                files.push_back(0);
            p = files[n];
        }
        if ( p == 0 ) {
            boost::filesystem::path fullName = fileName( n );
            string fullNameString = fullName.string();
            p = new MongoDataFile(n);
            int minSize = 0;
            if ( n != 0 && files[ n - 1 ] )
                minSize = files[ n - 1 ]->getHeader()->fileLength;
            if ( sizeNeeded + DataFileHeader::HeaderSize > minSize )
                minSize = sizeNeeded + DataFileHeader::HeaderSize;
            try {
                p->open( fullNameString.c_str(), minSize, preallocateOnly );
            }
            catch ( AssertionException& ) {
                delete p;
                throw;
            }
            if ( preallocateOnly )
                delete p;
            else
                files[n] = p;
        }
        return preallocateOnly ? 0 : p;
    }
Exemplo n.º 11
0
Arquivo: db.cpp Projeto: zhuk/mongo
    void repairDatabases() {

        dblock lk;
        vector< string > dbNames;
        getDatabaseNames( dbNames );
        for ( vector< string >::iterator i = dbNames.begin(); i != dbNames.end(); ++i ) {
            string dbName = *i;
            assert( !setClientTempNs( dbName.c_str() ) );
            MongoDataFile *p = database->getFile( 0 );
            MDFHeader *h = p->getHeader();
            if ( !h->currentVersion() ) {
                log() << "****" << endl;
                log() << "****" << endl;
                log() << "need to upgrade database " << dbName << " with pdfile version " << h->version << "." << h->versionMinor << ", "
                      << "new version: " << VERSION << "." << VERSION_MINOR << endl;
                if ( shouldRepairDatabases ){
                    // QUESTION: Repair even if file format is higher version than code?
                    log() << "\t starting repair" << endl;
                    string errmsg;
                    assert( repairDatabase( dbName.c_str(), errmsg ) );
                }
                else {
                    log() << "\t Not repairing, exiting!" << endl;
                    log() << "\t run --upgrade to upgrade dbs, then start again" << endl;
                    log() << "****" << endl;
                    dbexit( EXIT_NEED_UPGRADE );
                    shouldRepairDatabases = 1;
                    return;
                }
            } else {
                closeClient( dbName.c_str() );
            }
        }

        if ( shouldRepairDatabases ){
            log() << "finished checking dbs" << endl;
            dbexit( EXIT_CLEAN );
        }
    }
Exemplo n.º 12
0
    MongoDataFile* Database::suitableFile( int sizeNeeded, bool preallocate ) {

        // check existing files
        for ( int i=numFiles()-1; i>=0; i-- ) {
            MongoDataFile* f = getFile( i );
            if ( f->getHeader()->unusedLength >= sizeNeeded )
                return f;
        }

        // allocate files until we either get one big enough or hit maxSize
        for ( int i = 0; i < 8; i++ ) {
            MongoDataFile* f = addAFile( sizeNeeded, preallocate );

            if ( f->getHeader()->unusedLength >= sizeNeeded )
                return f;

            if ( f->getHeader()->fileLength >= MongoDataFile::maxSize() ) // this is as big as they get so might as well stop
                return f;
        }

        return 0;
    }
Exemplo n.º 13
0
    DiskLoc _repairExtent( Database* db , string ns, bool forward , DiskLoc eLoc , Writer& w ){
        LogIndentLevel lil;
        
        if ( eLoc.getOfs() <= 0 ){
            error() << "invalid extent ofs: " << eLoc.getOfs() << endl;
            return DiskLoc();
        }
        

        MongoDataFile * mdf = db->getFile( eLoc.a() );

        Extent * e = mdf->debug_getExtent( eLoc );
        if ( ! e->isOk() ){
            warning() << "Extent not ok magic: " << e->magic << " going to try to continue" << endl;
        }
        
        log() << "length:" << e->length << endl;
        
        LogIndentLevel lil2;
        
        set<DiskLoc> seen;

        DiskLoc loc = forward ? e->firstRecord : e->lastRecord;
        while ( ! loc.isNull() ){
            
            if ( ! seen.insert( loc ).second ) {
                error() << "infinite loop in extend, seen: " << loc << " before" << endl;
                break;
            }

            if ( loc.getOfs() <= 0 ){
                error() << "offset is 0 for record which should be impossible" << endl;
                break;
            }
            log(1) << loc << endl;
            Record* rec = loc.rec();
            BSONObj obj;
            try {
                obj = loc.obj();
                assert( obj.valid() );
                LOG(1) << obj << endl;
                w( obj );
            }
            catch ( std::exception& e ) {
                log() << "found invalid document @ " << loc << " " << e.what() << endl;
                if ( ! obj.isEmpty() ) {
                    try {
                        BSONElement e = obj.firstElement();
                        stringstream ss;
                        ss << "first element: " << e;
                        log() << ss.str();
                    }
                    catch ( std::exception& ) {
                    }
                }
            }
            loc = forward ? rec->getNext( loc ) : rec->getPrev( loc );
        }
        return forward ? e->xnext : e->xprev;
        
    }
Exemplo n.º 14
0
    /** @return number of skipped (invalid) documents */
    unsigned compactExtent(const char *ns, NamespaceDetails *d, const DiskLoc diskloc, int n,
                const scoped_array<IndexSpec> &indexSpecs,
                scoped_array<SortPhaseOne>& phase1, int nidx, bool validate, 
                double pf, int pb)
    {
        log() << "compact begin extent #" << n << " for namespace " << ns << endl;
        unsigned oldObjSize = 0; // we'll report what the old padding was
        unsigned oldObjSizeWithPadding = 0;

        Extent *e = diskloc.ext();
        e->assertOk();
        verify( e->validates() );
        unsigned skipped = 0;

        {
            // the next/prev pointers within the extent might not be in order so we first page the whole thing in 
            // sequentially
            log() << "compact paging in len=" << e->length/1000000.0 << "MB" << endl;
            Timer t;
            MongoDataFile* mdf = cc().database()->getFile( diskloc.a() );
            HANDLE fd = mdf->getFd();
            int offset = diskloc.getOfs();
            Extent* ext = diskloc.ext();
            size_t length = ext->length;
                
            touch_pages(fd, offset, length, ext);
            int ms = t.millis();
            if( ms > 1000 ) 
                log() << "compact end paging in " << ms << "ms " << e->length/1000000.0/ms << "MB/sec" << endl;
        }

        {
            log() << "compact copying records" << endl;
            long long datasize = 0;
            long long nrecords = 0;
            DiskLoc L = e->firstRecord;
            if( !L.isNull() ) {
                while( 1 ) {
                    Record *recOld = L.rec();
                    L = recOld->nextInExtent(L);
                    BSONObj objOld = BSONObj::make(recOld);

                    if( !validate || objOld.valid() ) {
                        nrecords++;
                        unsigned sz = objOld.objsize();

                        oldObjSize += sz;
                        oldObjSizeWithPadding += recOld->netLength();

                        unsigned lenWHdr = sz + Record::HeaderSize;
                        unsigned lenWPadding = lenWHdr;
                        {
                            lenWPadding = static_cast<unsigned>(pf*lenWPadding);
                            lenWPadding += pb;
                            lenWPadding = lenWPadding & quantizeMask(lenWPadding);
                            if( lenWPadding < lenWHdr || lenWPadding > BSONObjMaxUserSize / 2 ) { 
                                lenWPadding = lenWHdr;
                            }
                        }
                        DiskLoc loc = allocateSpaceForANewRecord(ns, d, lenWPadding, false);
                        uassert(14024, "compact error out of space during compaction", !loc.isNull());
                        Record *recNew = loc.rec();
                        datasize += recNew->netLength();
                        recNew = (Record *) getDur().writingPtr(recNew, lenWHdr);
                        addRecordToRecListInExtent(recNew, loc);
                        memcpy(recNew->data(), objOld.objdata(), sz);

                        {
                            // extract keys for all indexes we will be rebuilding
                            for( int x = 0; x < nidx; x++ ) { 
                                phase1[x].addKeys(indexSpecs[x], objOld, loc);
                            }
                        }
                    }
                    else { 
                        if( ++skipped <= 10 )
                            log() << "compact skipping invalid object" << endl;
                    }

                    if( L.isNull() ) { 
                        // we just did the very last record from the old extent.  it's still pointed to 
                        // by the old extent ext, but that will be fixed below after this loop
                        break;
                    }

                    // remove the old records (orphan them) periodically so our commit block doesn't get too large
                    bool stopping = false;
                    RARELY stopping = *killCurrentOp.checkForInterruptNoAssert() != 0;
                    if( stopping || getDur().aCommitIsNeeded() ) {
                        e->firstRecord.writing() = L;
                        Record *r = L.rec();
                        getDur().writingInt(r->prevOfs()) = DiskLoc::NullOfs;
                        getDur().commitIfNeeded();
                        killCurrentOp.checkForInterrupt(false);
                    }
                }
            } // if !L.isNull()

            verify( d->firstExtent == diskloc );
            verify( d->lastExtent != diskloc );
            DiskLoc newFirst = e->xnext;
            d->firstExtent.writing() = newFirst;
            newFirst.ext()->xprev.writing().Null();
            getDur().writing(e)->markEmpty();
            freeExtents( diskloc, diskloc );
            // update datasize/record count for this namespace's extent
            {
                NamespaceDetails::Stats *s = getDur().writing(&d->stats);
                s->datasize += datasize;
                s->nrecords += nrecords;
            }

            getDur().commitIfNeeded();

            { 
                double op = 1.0;
                if( oldObjSize ) 
                    op = static_cast<double>(oldObjSizeWithPadding)/oldObjSize;
                log() << "compact finished extent #" << n << " containing " << nrecords << " documents (" << datasize/1000000.0 << "MB)"
                    << " oldPadding: " << op << ' ' << static_cast<unsigned>(op*100.0)/100
                    << endl;                    
            }
        }

        return skipped;
    }