void testanistropic(int argc,char **argv)
{//sqrt change
//datatype write data test.writeImage(*output);
char *pt="single_well";
int l=281,m=481,n=2501,l1=0,l2=0,iter_outer=30;
//int LX=0,LY=0,LZ=0;
RawImage test;
unsigned char * indata=new unsigned char [l*m*n];
//short * indata=new short [l*m*n];
test.readImage(indata,"F:\\lab\\VTKproj\\mig.raw",l*m*n);
Raw *initial=new Raw(l,m,n);
float *inputo=new PIXTYPE[l*m*n];
for (int i = 0; i < l*m*n; i++)
{
inputo[i]=(unsigned char) indata[i];
}
delete [] indata;
Raw *input=new Raw(l,m,n,inputo);
IShowraw(*input,1,argv);
WipeNioisePde *pm=new WipeNioisePde(*input,1,1.0,0);
Raw * output=new Raw (pm->Perona_Malik(*input));
//test.writeImage();
IShowraw(*output,1,argv);
test.writeImage(*output);
}
void testlobster(int argc,char **argv)
{
char *pt="single_well";
int l=301,m=324,n=56,l1=0,l2=0,iter_outer=50;
RawImage test;
unsigned char * indata=new unsigned char [l*m*n];
//Raw *inputeasy=new Raw(l,m,n);
Raw *initial=new Raw(l,m,n);
test.readImage(indata,"E:\\geo\\lobster.raw",301*324*56);
float *inputo=new float[l*m*n];
for (int i = 0; i < l*m*n; i++)
{
inputo[i]=(float) indata[i];
}
Raw *input=new Raw(l,m,n,inputo);
int width=10;
int x1=138,x2=144,y1=137,y2=155,z1=30,z2=35; //test for little data
for (int i=0;i<l;i++)
{
for (int j=0;j<m;j++)
{
for (int k=0;k<n;k++)
{
if (i>x1 && j>y1 && k>z1 && i<x2 && j<y2 && k<z2)
{
initial->put(i,j,k,-2.0);
}
else if (i<x1|| j<y1 || k < z1 || i>x2 || j>y2 || k> z2)
{
initial->put(i,j,k,2.0);
}
else {
initial->put(i,j,k,-2.0);
}
}
}
}
RawImage *write=new RawImage();
ThreeDim_LevelSet *ls=new ThreeDim_LevelSet();
//IShowraw(*input,argc,argv);
ls->initialg(*input);
ls->minimal_surface(*initial,*input,5.0,0.1,-3,1.5,1,iter_outer,pt);
IShowraw(*initial,argc,argv);
test.writeImage(*initial);
}
void HUandThickness()
{
//thickness data
string dir1(input1);//K:\sdf\volume\clean\clean\ep// D:\sdfdata\distance\rocdata
//origion data
string dir2(input2);//K:\sdf\volume\clean\clean\ep\rocdatao
//skeleton data
string dir3(input3);//K:\sdf\volume\clean\clean\ep\rocdatao
//cout << dir1 <<endl;
vector<string> files1;
vector<string> files2;
vector<string> files3;
GetFileNameFromDir(dir1, files1);
GetFileNameFromDir(dir2, files2);
GetFileNameFromDir(dir3, files3);
vector<string>::iterator iterFile1, iterFile2 = files2.begin(), iterFile3 = files3.begin();
for (iterFile1 = files1.begin(); iterFile1 != files1.end(); iterFile1++)
{
iterFile1->assign(iterFile1->substr(dir1.size() + 1));
iterFile2->assign(iterFile2->substr(dir2.size() + 1));
iterFile3->assign(iterFile3->substr(dir3.size() + 1));
cout << *iterFile1 << endl;
cout << *iterFile2 << endl;
//iterFile2++;
int l = 0, m = 0, n = 0;
char dst1[200], dst2[200], dst3[200];
strcpy(dst1, (*iterFile1).c_str()); //string-->char
strcpy(dst2, (*iterFile2).c_str());
strcpy(dst3, (*iterFile3).c_str());
RawImage test;
char dir3[200] = input1;
char dir4[200] = input2;
char dir5[200] = input1;
char dir6[200] = input3;
strcat(dir3, dst1);
strcat(dir4, dst2);
strcat(dir5, dst1);
strcat(dir6, dst3);
short*orgiondata = test.readStream(dir4, &l, &m, &n);
PIXTYPE * innerdata = new PIXTYPE[l*m*n];
test.readImage2(innerdata, dir3, l*m*n);
unsigned char * skeletondata = new unsigned char[l*m*n];
test.readImage(skeletondata, dir6, l*m*n);
float *inputo = new float[l*m*n];
PIXTYPE *skeletondataF = new PIXTYPE[l*m*n];
PIXTYPE *innerdataF = new PIXTYPE[l*m*n];
PIXTYPE max = 0, min = 1000;
for (int i = 0; i < l*m*n; i++)
{
PIXTYPE a = inputo[i] = (float)orgiondata[i] + 1020;
max > a ? max = max : max = a;
min < a ? min = min : min = a;
PIXTYPE b = skeletondataF[i] = biglittleedian(float(skeletondata[i]));
//if (PIXTYPE c=innerdataF[i]=biglittleedian((float)innerdata[i]))
//{
// cout <<"aaa"<<endl;
//}
PIXTYPE c = innerdataF[i] = biglittleedian((float)innerdata[i]);
}
cout << max << endl;
cout << min << endl;
delete[]skeletondata;
delete[]innerdata;
delete[] orgiondata;
Raw *thickness = new Raw(l, m, n, innerdataF, true);
Raw *orgion = new Raw(l, m, n, inputo);
Raw *skeleton = new Raw(l, m, n, skeletondataF);
Raw *hu = thicknessequalHU(orgion, thickness);
queue<Point>q;
vector<Point> c;
DivideRegion *dr = new DivideRegion(q, skeleton, c);
dr->putskletoninorder();
dr->DivideRegionv2(skeleton, hu);
dr->DivideRegionthicknessv2(skeleton, thickness);
}
}
void testsesmic()
{
char *pt="single_well";
int l = 201,m = 201,n = 851, l1=0,l2=0,iter_outer = 10;
RawImage test;
char dirbody[100];
unsigned char * indata=new unsigned char[l*m*n];
test.readImage(indata,"K:\\sdf\\geo\\Probe_fault_Amp.probe .raw",l*m*n);//F:\\PA1\\ST1\\SE1\\ //K:\\sdf\\MRI
Raw *initial=new Raw(l,m,n);
float *inputo=new float[l*m*n];
short min = 1000,max = -100;
for (int i = 0; i < l*m*n; i++)
{
//change the big --little
//float * p= (float *)(indata+i);
//unsigned char * bp= (unsigned char *)p;
//std:swap(bp[0],bp[3]);
//std::swap(bp[1],bp[2]);
min < indata[i] ? min=min:min=indata[i];
max > indata[i] ? max=max:max=indata[i];
//cal the max and min data
/* if ( indata[i] >= 864 && indata[i] <= 1063 )
{
inputo[i] = 100;
}
else
{
inputo[i] = (short )0;
}
*/
inputo[i]=(float) indata[i];
}
cout <<min << max <<endl;
Raw *input=new Raw(l,m,n,inputo);
//Filter *f=new Filter();
//input=f->guass3DFilter(input,3);
RawImage *write=new RawImage();
ThreeDim_LevelSet *ls=new ThreeDim_LevelSet();
//ls->initialg(*input);
for (int i=0; i<input->getXsize(); i++)
{
for (int j=0; j<input->getYsize(); j++)
{
for (int k=0; k<input->getZsize(); k++)
{
//if (input->get(i,j,k) >= 1)
//{
// initial->put(i,j,k,-2);
//}
//else
//if ((i >= 172 && i <= 352 && j >= 164 && j <= 376 && z>19 && z <))
if ((i >= 196 && i <= 220 && j >= 202 && j <= 267 && k > 40 && k < 50))
{
initial->put(i, j, k, -2);
}
else
{
initial->put(i, j, k, 2);
}
}
}
}
*initial=ls->minimal_surface(*initial,*input,5.0,0.1,-3,1.5,1,iter_outer,pt);
//if you available this, don,t
//forget to change the next line to initial
test.writeMRI(*initial,"K:\\sdf\\geo\\data.raw");//F:\\PA1\\ST1\\SE1
}