void ParameterScanWorker::run()
{
workerStarted();
//The user may have aborted the minization... check here..
if(mHost.isBeingTerminated())
{
//user did set the terminate flag to true.. discard any data and get out of the
//plugin execute code..
RRPLOG(lInfo)<<"The ParameterScanWorker was terminated.. aborting";
workerFinished();
return;
}
//Create arrayed data
ArrayedParameter para(mHost.mParameter.getValueReference());
StringList selList(mHost.mSelectionList.getValue());
RoadRunner rr;
rr.load(mHost.mSBML.getValue());
//Make sure time is the first column in the selectin list
if(selList.size() && compareNoCase(selList[0], "time") != true)
{
selList.InsertAt(0,"time");
}
rr.setSelections(selList);
TelluriumData& data = mHost.mOutputData.getValueReference();
data.clear();
for(int i = 0; i < para.getNumberOfIncrements() + 1; i++)
{
rr::SimulateOptions options;
options.flags |= rr::SimulateOptions::RESET_MODEL;
options.start = mHost.mStartTime.getValue();
options.duration = mHost.mEndTime.getValue() - mHost.mStartTime.getValue();
options.steps = mHost.mNumberOfPointsPerSimulation.getValue() - 1;
//Set parameter
rr.setValue(para.getName(), para.getCurrentValue());
const RoadRunnerData *rrData = rr.simulate(&options);
TelluriumData *temp = new TelluriumData(*rrData);
data.append(*temp);
delete temp;
para.increment();
}
//The Arrayed parameter need to be added to the data.
data.setArrayedParameter(para);
workerFinished();
}
