/*
* Logs a constraint failure to the validator for the given SBML object.
* The parameter message is used instead of the constraint's member
* variable msg.
*/
void
VConstraint::logFailure (const SBase& object, const std::string& message)
{
std::string pkg = object.getPackageName();
unsigned int pkgVersion = object.getPackageVersion();
if (mId > 99999 && pkg == "core")
{
// we are dealing with a core object that is logging errors
// relating to a package
// need to work out which pkg
unsigned int offset = (unsigned int)(floor((double)mId/100000.0)) * 100000;
if (offset == 9900000)
{
// we are dealing with the strict units validator
mId = mId - offset;
}
else
{
// it is possible that the object does not have a direct plugin
// it may the child of an object that does
// so lets cut straight to the parent document
const SBMLDocument * doc = object.getSBMLDocument();
if (doc != NULL)
{
for (unsigned int i = 0; i < doc->getNumPlugins(); i++)
{
const SBMLExtension * ext = doc->getPlugin(i)->getSBMLExtension();
if (ext->getErrorIdOffset() == offset)
{
pkg = doc->getPlugin(i)->getPackageName();
pkgVersion = doc->getPlugin(i)->getPackageVersion();
break;
}
}
}
}
}
SBMLError error = SBMLError( mId, object.getLevel(), object.getVersion(),
message, object.getLine(), object.getColumn(),
LIBSBML_SEV_ERROR, LIBSBML_CAT_SBML, pkg, pkgVersion);
if (error.getSeverity() != LIBSBML_SEV_NOT_APPLICABLE)
mValidator.logFailure(error);
/* ( SBMLError( mId, object.getLevel(), object.getVersion(),
message, object.getLine(), object.getColumn(),
LIBSBML_SEV_ERROR, LIBSBML_CAT_SBML ));*/
}
/*
* Logs a constraint failure to the validator for the given SBML object.
* The parameter message is used instead of the constraint's member
* variable msg.
*/
void
VConstraint::logFailure (const SBase& object, const std::string& message)
{
if (&object == NULL || &message == NULL) return;
SBMLError error = SBMLError( mId, object.getLevel(), object.getVersion(),
message, object.getLine(), object.getColumn() );
if (error.getSeverity() != LIBSBML_SEV_NOT_APPLICABLE)
mValidator.logFailure(error);
/* ( SBMLError( mId, object.getLevel(), object.getVersion(),
message, object.getLine(), object.getColumn(),
LIBSBML_SEV_ERROR, LIBSBML_CAT_SBML ));*/
}
/*
* Adds the given SBMLError to the log.
*
* @param error SBMLError, the error to be logged.
*/
void
SBMLErrorLog::add (const SBMLError& error)
{
if (error.getSeverity() != LIBSBML_SEV_NOT_APPLICABLE)
XMLErrorLog::add(error);
}
LIBSBML_CPP_NAMESPACE_USE
/** @endcond */
CK_CPPSTART
START_TEST (test_SBMLError_create)
{
SBMLError* error = new SBMLError;
fail_unless( error != NULL );
delete error;
error = new SBMLError(EmptyListInReaction);
fail_unless( error->getErrorId() == EmptyListInReaction );
fail_unless( error->getSeverity() == LIBSBML_SEV_ERROR );
fail_unless( error->getSeverityAsString() == "Error" );
fail_unless( error->getCategory() == LIBSBML_CAT_SBML );
fail_unless( error->getCategoryAsString() == "General SBML conformance");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(OverdeterminedSystem, 2, 1);
fail_unless( error->getErrorId() == OverdeterminedSystem );
fail_unless( error->getSeverity() == LIBSBML_SEV_WARNING );
fail_unless( error->getSeverityAsString() == "Warning" );
fail_unless( error->getCategory() == LIBSBML_CAT_OVERDETERMINED_MODEL );
fail_unless( error->getCategoryAsString() == "Overdetermined model");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(OffsetNoLongerValid, 2, 2);
fail_unless( error->getErrorId() == OffsetNoLongerValid );
fail_unless( error->getSeverity() == LIBSBML_SEV_ERROR );
fail_unless( error->getSeverityAsString() == "Error" );
fail_unless( error->getCategory() == LIBSBML_CAT_GENERAL_CONSISTENCY );
fail_unless( error->getCategoryAsString() == "SBML component consistency");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(NoSBOTermsInL1, 2, 2);
fail_unless( error->getErrorId() == NoSBOTermsInL1 );
fail_unless( error->getSeverity() == LIBSBML_SEV_WARNING );
fail_unless( error->getSeverityAsString() == "Warning" );
fail_unless( error->getCategory() == LIBSBML_CAT_SBML_L1_COMPAT );
fail_unless( error->getCategoryAsString() == "Translation to SBML L1V2");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(DisallowedMathMLEncodingUse, 2, 2);
fail_unless( error->getErrorId() == DisallowedMathMLEncodingUse );
fail_unless( error->getSeverity() == LIBSBML_SEV_ERROR );
fail_unless( error->getSeverityAsString() == "Error" );
fail_unless( error->getCategory() == LIBSBML_CAT_MATHML_CONSISTENCY );
fail_unless( error->getShortMessage() == "Use of the MathML 'encoding' attribute is not allowed on this element");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(DisallowedMathMLEncodingUse, 1, 2);
fail_unless( error->getErrorId() == DisallowedMathMLEncodingUse );
fail_unless( error->getSeverity() == LIBSBML_SEV_NOT_APPLICABLE );
fail_unless( error->getCategory() == LIBSBML_CAT_MATHML_CONSISTENCY );
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(UnknownError, 2, 4);
fail_unless( error->getErrorId() == UnknownError );
fail_unless( error->getSeverity() == LIBSBML_SEV_FATAL );
fail_unless( error->getSeverityAsString() == "Fatal" );
fail_unless( error->getCategory() == LIBSBML_CAT_INTERNAL );
fail_unless( error->getShortMessage() == "Encountered unknown internal libSBML error");
fail_unless( error->isValid() == true);
delete error;
error = new SBMLError(70912, 2, 4);
fail_unless( error->getErrorId() == 70912 );
fail_unless( error->getSeverity() == LIBSBML_SEV_WARNING );
fail_unless( error->getSeverityAsString() == "Warning" );
fail_unless( error->getCategory() == LIBSBML_CAT_INTERNAL );
fail_unless( error->getShortMessage() == "Encountered unknown internal libSBML error");
fail_unless( error->isValid() == false);
delete error;
}
