TestOptiCluster::TestOptiCluster() { //setup
m = MothurOut::getInstance();
TestDataSet data;
filenames = data.getSubsetFNGFiles(100); //Fasta, name, group returned
string inputString = "fasta=" + filenames[0];
m->mothurOut("/******************************************/"); m->mothurOutEndLine();
m->mothurOut("Running command: dist.seqs(" + inputString + ")"); m->mothurOutEndLine();
m->mothurCalling = true;
Command* distCommand = new DistanceCommand(inputString);
distCommand->execute();
map<string, vector<string> > outputFilenames = distCommand->getOutputFiles();
delete distCommand;
m->mothurCalling = false;
columnFile = outputFilenames["column"][0];
matrix = new OptiMatrix(columnFile, filenames[1], "name", "column", 0.03, false);
setVariables(matrix, "mcc");
}
TestVsearchFileParser::TestVsearchFileParser() { //setup
m = MothurOut::getInstance();
TestDataSet data;
filenames = data.getSubsetFNGFiles(100);
ct = data.getCountTable();
}
TestRenameFileCommand::TestRenameFileCommand() { //setup
m = MothurOut::getInstance();
TestDataSet data;
filenames = data.getSubsetFNGFiles();
}
TestSharedRabundVector::TestSharedRabundVector() : SharedRAbundVector() { //setup
m = MothurOut::getInstance();
TestDataSet data; sharedFile = data.getSharedFile();
}
