Exemplos de path_t::resize em C++ (Cpp)

Exemplo n.º 1

Arquivo: align_path.cpp Projeto: ctb/quast

void
apath_limit_ref_length(
    const unsigned target_ref_length,
    path_t& apath)
{
    unsigned ref_length(0);

    const unsigned as(apath.size());
    for (unsigned i(0); i<as; ++i)
    {
        path_segment& ps(apath[i]);
        if (! is_segment_type_ref_length(ps.type)) continue;
        ref_length += ps.length;

        if (ref_length < target_ref_length) continue;

        if (ref_length > target_ref_length)
        {
            const unsigned extra(ref_length - target_ref_length);
            assert(ps.length > extra);
            ps.length -= extra;
        }
        apath.resize(i+1);
        break;
    }
}

Exemplo n.º 2

Arquivo: align_path_bam_util.cpp Projeto: BadSeby/isaac_variant_caller

void
bam_cigar_to_apath(const uint32_t* bam_cigar,
                   const unsigned n_cigar,
                   path_t& apath) {

    // this assertion isn't really required...
    //    assert(n_cigar>0);
    apath.resize(n_cigar);
    for (unsigned i(0); i<n_cigar; ++i) {
        apath[i].length=(bam_cigar[i]>>BAM_CIGAR_SHIFT);
        apath[i].type = static_cast<align_t>(1+(bam_cigar[i]&BAM_CIGAR_MASK));
    }
}