af::array Kernel::distanceSquared(const af::array& x , const af::array& y)
{
int nx = x.dims(0);
int ny = y.dims(0);
af::array arg1 = af::matmul(af::sum(af::pow(x,2.0),1), af::constant(1.0,1,ny));
af::array arg2 = af::matmul(af::constant(1.0,nx,1), af::sum(af::pow(y,2.0),1).T());
af::array arg3 = 2.0 * (af::matmul(x,y.T()));
af::array values = arg1 + arg2 - arg3;
return values;
}
void MLP::setWeights(const af::array& weights)
{
if (weights.dims() != this->weights.dims()) {
BOOST_THROW_EXCEPTION(InvalidArgumentError() << EInfo_Name("weights"));
}
this->weights = weights;
}
af::array Kernel::calculateGaussianKernel(const af::array& x1, const af::array& x2)
{
int rowX1 = x1.dims(0);
float eta = 1.0/(m_lengthScale*m_lengthScale);
af::array temp = af::exp(-eta * distanceSquared(x1,x2) / 2.0);
return m_useBias ? af::join(1, af::constant(1.0,rowX1,1),temp) : temp;
}
af::array Kernel::calculateDistanceKernel(const af::array& x1, const af::array& x2)
{
int rowX1 = x1.dims(0);
double eta = 1.0/(m_lengthScale*m_lengthScale);
af::array temp = sqrt(eta)*sqrt(distanceSquared(x1,x2));
return m_useBias ? af::join(1, af::constant(1.0,rowX1,1),temp) : temp;
}
af::array Kernel::calculatePolynomialKernel(const af::array& x1, const af::array& x2)
{
int rowX1 = x1.dims(0);
double eta = 1.0/(m_lengthScale*m_lengthScale);
af::array temp = af::pow(af::matmul(x1,(eta * x2).T()) + 1.0, m_polynomailPower);
af_print(af::sum( af::sum( af::isNaN(temp) )),1);
return m_useBias ? af::join(1, af::constant(1.0,rowX1,1),temp) : temp;
}
af::array Kernel::calculateBubbleKernel(const af::array& x1, const af::array& x2)
{
int rowX1 = x1.dims(0);
double eta = 1/(m_lengthScale*m_lengthScale);
af::array r2 = eta*distanceSquared(x1,x2) ;
if(m_useBias)
{
return af::join(1, af::constant(1,rowX1,1), r2 < 1);
}
else
{
return r2 < 1;
}
}
af::array Kernel::calculateThinPlateSplineKernel(const af::array& x1, const af::array& x2)
{
int rowX1 = x1.dims(0);
double eta = 1.0/(m_lengthScale*m_lengthScale);
af::array r2 = eta*distanceSquared(x1,x2);
if(m_useBias)
{
return af::join(1, af::constant(1,rowX1,1), 0.5 * r2 * af::log(r2 + (r2 == 0)));
}
else
{
return 0.5 * r2 * af::log(r2 + (r2 == 0));
}
}
virtual af::array dfn(const af::array &val)
{
return af::constant(1, val.dims());
}
void setElectricField(af::array e)
{
this->electric_field = e.as(ctype);
}
void setMask(af::array mask)
{
this->mask = mask.as(ctype);
}
af::array dfn(const af::array &input)
{
return (input >= mVal).as(input.type());
}