Exemplo n.º 1
0
    void load(input_archive& ar, boost::multi_array<T, N, Allocator>& marray, unsigned)
    {
        boost::array<std::size_t, N> shape;
        ar & shape;

        marray.resize(shape);
        ar & make_array(marray.data(), marray.num_elements());
    }
Exemplo n.º 2
0
    void precompute(double distance, double scalex, double scaley)
    {
        double const radius2 = distance * distance;

        width  = 2* ceil(distance / scalex) + 1;
        height = 2* ceil(distance / scaley) + 1;
        in_distance.resize(boost::extents[height][width]);
        std::fill(in_distance.data(), in_distance.data() + in_distance.num_elements(), false);
        parents.resize(boost::extents[height][width]);
        std::fill(parents.data(), parents.data() + parents.num_elements(), std::make_pair(-1, -1));

        centerx = width  / 2;
        centery = height / 2;
        parents[centery][centerx] = std::make_pair(-1, -1);

        for (unsigned int y = 0; y < height; ++y)
        {
            for (unsigned int x = 0; x < width; ++x)
            {
                int dx = (centerx - x);
                int dy = (centery - y);
                if (dx == 0 && dy == 0) continue;

                double d2 = dx * dx * scalex * scalex + dy * dy * scaley * scaley;
                in_distance[y][x] = (d2 < radius2);
                if (abs(dx) > abs(dy))
                {
                    int parentx = x + dx / abs(dx);
                    int parenty = y + rint(static_cast<double>(dy) / abs(dx));
                    parents[y][x] = std::make_pair(parentx, parenty);
                }
                else
                {
                    int parentx = x + rint(static_cast<double>(dx) / abs(dy));
                    int parenty = y + dy / abs(dy);
                    parents[y][x] = std::make_pair(parentx, parenty);
                }
            }
        }
    }
Exemplo n.º 3
0
void save( Archive & ar,
           const boost::multi_array<double,2> & t,
           const unsigned int file_version )
{
    typedef boost::multi_array<double,2> multi_array_;
    typedef typename multi_array_::size_type size_;
    size_ n0 = ( t.shape()[0] );
    ar << BOOST_SERIALIZATION_NVP( n0 );
    size_ n1 = ( t.shape()[1] );
    ar << BOOST_SERIALIZATION_NVP( n1 );
    ar << boost::serialization::make_array( t.data(),
                                            t.num_elements() );
}
Exemplo n.º 4
0
void load( Archive & ar,
           boost::multi_array<double,2> & t,
           const unsigned int file_version )
{
    typedef boost::multi_array<double,2> multi_array_;
    typedef typename multi_array_::size_type size_;
    size_ n0;
    ar >> BOOST_SERIALIZATION_NVP( n0 );
    size_ n1;
    ar >> BOOST_SERIALIZATION_NVP( n1 );
    t.resize( boost::extents[n0][n1] );
    ar >> make_array( t.data(), t.num_elements() );
}
Exemplo n.º 5
0
void fill(boost::multi_array<V1,NumDims,Allocator> &x, const V2 &v) {
    std::fill_n(x.data(), x.num_elements(), v);
}
Exemplo n.º 6
0
  /** Returns the total number of elements in the buffer

      Equal to get_range()[0] * ... * get_range()[dimensions-1].
  */
  auto get_count() const {
    return allocation.num_elements();
  }
Exemplo n.º 7
0
 void save(output_archive& ar, const boost::multi_array<T, N,
     Allocator>& marray, unsigned)
 {
     ar & make_array(marray.shape(), marray.num_dimensions());
     ar & make_array(marray.data(), marray.num_elements());
 }
Exemplo n.º 8
0
/** \brief get the centroid of the neighbourhood of an image pixel given by it's offset */
valarray<double> centroid::operator()(const size_t& l) const
{
    const int scope = 1;
    //convert the raveled index to 3D indices
	size_t
		i = l / image.strides()[0],
		j = (l % image.strides()[0]) / image.strides()[1],
		k = (l % image.strides()[0]) % image.strides()[1];
    //cout<<"l="<<l<<" -> i="<<i<<" j="<<j<<" k="<<k<<" ... ";

	//the data of the neighbourhood view are copied together for the coder's sanity
	boost::multi_array<float,3> ngb =
		image[boost::indices
				[image.shape()[0]<2*scope+1 ? range() : range(i-scope, i+scope+1)]
				[image.shape()[1]<2*scope+1 ? range() : range(j-scope, j+scope+1)]
				[image.shape()[2]<2*scope+1 ? range() : range(k-scope, k+scope+1)]
			];
    //Find the extrema of the neighbourhood.
    std::pair<float*, float*> minmax = boost::minmax_element(ngb.origin(), ngb.origin()+ngb.num_elements());
    //If the neighbourhood contains a negative pixel, we are at the edge of a Fourier filtering artefact that should not be considered a particle
    if(*minmax.first < 0)
        return valarray<double>(-1.0, 3);
	//marking non local maxima (including diagonals)
	if(image.origin()[l] != *minmax.second)
        return valarray<double>(-1.0, 3);

	//calculation of the intensity centroid
	valarray<double> c(0.0,3);
	double total_w = 0.0;
	float *px = ngb.origin();
	for(int x=0; x<ngb.shape()[0];++x)
        for(int y=0; y<ngb.shape()[1];++y)
            for(int z=0; z<ngb.shape()[2];++z)
            {
                const double weight = pow((double)(x-scope), 2) + pow((double)(y-scope), 2) + pow((double)(z-scope), 2) * (double)(*px);
                c[0] += (x-scope)*weight;
                c[1] += (y-scope)*weight;
                c[2] += (z-scope)*weight;
                total_w += weight ;
                px++;
            }
    //cout<<c[0]<<"\t"<<c[1]<<"\t"<<c[2]<<endl;
    //cout<<"divide by a weight of "<<total_w<<endl;
    c /= total_w/pow(2.0*scope+1, 2);
    //cout<<c[0]<<"\t"<<c[1]<<"\t"<<c[2]<<endl;
    //c /= (double)accumulate(ngb.origin(), ngb.origin()+ngb.num_elements(), 0.0);

	//double sum = accumulate(ngb.origin(),ngb.origin()+ngb.num_elements(),0.0);
	//cout<<"valarrays ... ";
	/*valarray<double> c(0.0,3), pos(0.0,3), middle(0.0,3);
	for(size_t d=0; d<3;++d)
		middle[d] = ngb.shape()[d]/3;
	float *v = ngb.origin();
	for(pos[0]=0;pos[0]<ngb.shape()[0];++pos[0])
		for(pos[1]=0;pos[1]<ngb.shape()[1];++pos[1])
			for(pos[2]=0;pos[2]<ngb.shape()[2];++pos[2])
				c += (pos-middle) * (*v++);//pow(*v++, 2.0f);
	c /= image.origin()[l];//pow(image.origin()[l], 2.0f);

	for(size_t d=0;d<3;++d)
        c[d] = (c[d]<0?-1:1) * sqrt(abs(c[d]))/4.5;*/
	c[0] += i;
	c[1] += j;
	c[2] += k;
	return c;
};