void HDFAtom<std::vector<std::string> >::Read(std::vector<std::string> &values) {
std::string value;
/*
* This attribute is an array of std::strings. They are read in by
* storing pointers to std::strings in memory controlled by HDF. To read
* the std::strings, read the pointers into a temporary array, then copy
* those std::strings to the values array. This way when the values array
* is destroyed, it will not try and get rid of space that is under
* HDF control.
*/
H5::DataSpace attributeSpace = attribute.getSpace();
hsize_t nPoints;
nPoints = attributeSpace.getSelectNpoints();
H5::DataType attrType = attribute.getDataType(); // necessary for attr.read()
// Declare and initialize std::vector of pointers to std::string attribute list.
std::vector<char*> ptrsToHDFControlledMemory;
ptrsToHDFControlledMemory.resize(nPoints);
// Copy the pointers.
attribute.read(attrType, &ptrsToHDFControlledMemory[0]);
// Copy the std::strings into memory the main program has control over.
unsigned int i;
for (i = 0; i < ptrsToHDFControlledMemory.size(); i++ ){
values.push_back(ptrsToHDFControlledMemory[i]);
free(ptrsToHDFControlledMemory[i]);
}
}
void Datafile::write_time_step_history(size_t index, double eps) {
// pack values of index and eps into a struct in memory
time_step_history_pair pair;
pair.step = static_cast<int>(index);
pair.time_step = eps;
try {
ensure_time_step_history_data();
// calculate current size, extend if needed, and write data. You know the drill.
H5::DataSpace tempspace = time_step_history_data.getSpace();
tempspace.selectAll();
hsize_t cur_size = tempspace.getSelectNpoints();
hsize_t new_size = cur_size + 1;
space_1d.setExtentSimple(1, &new_size);
time_step_history_data.extend(&new_size);
space_1d.selectElements(H5S_SELECT_SET, 1, &cur_size);
validate_selection(space_1d);
time_step_history_data.write(&pair, time_step_history_type, scalar_space, space_1d);
}
catch(H5::Exception& e) {
e.printError();
throw;
}
}
