void mitk::ImageChannelSelector::GenerateInputRequestedRegion()
{
Superclass::GenerateInputRequestedRegion();
mitk::ImageToImageFilter::InputImagePointer input =
const_cast< mitk::ImageToImageFilter::InputImageType * > ( this->GetInput() );
mitk::Image::Pointer output = this->GetOutput();
Image::RegionType requestedRegion;
requestedRegion = output->GetRequestedRegion();
requestedRegion.SetIndex(4, m_ChannelNr);
requestedRegion.SetSize(4, 1);
input->SetRequestedRegion( & requestedRegion );
}
/*
* What is the input requested region that is required to produce the output
* requested region? By default, the largest possible region is always
* required but this is overridden in many subclasses. For instance, for an
* image processing filter where an output pixel is a simple function of an
* input pixel, the input requested region will be set to the output
* requested region. For an image processing filter where an output pixel is
* a function of the pixels in a neighborhood of an input pixel, then the
* input requested region will need to be larger than the output requested
* region (to avoid introducing artificial boundary conditions). This
* function should never request an input region that is outside the the
* input largest possible region (i.e. implementations of this method should
* crop the input requested region at the boundaries of the input largest
* possible region).
*/
void mitk::ExtractImageFilter::GenerateInputRequestedRegion()
{
Superclass::GenerateInputRequestedRegion();
ImageToImageFilter::InputImagePointer input = const_cast< ImageToImageFilter::InputImageType* > ( this->GetInput() );
Image::Pointer output = this->GetOutput();
if (input->GetDimension() == 2)
{
input->SetRequestedRegionToLargestPossibleRegion();
return;
}
Image::RegionType requestedRegion;
requestedRegion = output->GetRequestedRegion();
requestedRegion.SetIndex(0, 0);
requestedRegion.SetIndex(1, 0);
requestedRegion.SetIndex(2, 0);
requestedRegion.SetSize(0, input->GetDimension(0));
requestedRegion.SetSize(1, input->GetDimension(1));
requestedRegion.SetSize(2, input->GetDimension(2));
requestedRegion.SetIndex( m_SliceDimension, m_SliceIndex ); // only one slice needed
requestedRegion.SetSize( m_SliceDimension, 1 );
input->SetRequestedRegion( &requestedRegion );
}
void mitk::CylindricToCartesianFilter::GenerateInputRequestedRegion()
{
Superclass::GenerateInputRequestedRegion();
mitk::ImageToImageFilter::InputImagePointer input =
const_cast< mitk::ImageToImageFilter::InputImageType * > ( this->GetInput() );
mitk::Image::Pointer output = this->GetOutput();
Image::RegionType requestedRegion;
requestedRegion = output->GetRequestedRegion();
requestedRegion.SetIndex(0, 0);
requestedRegion.SetIndex(1, 0);
requestedRegion.SetIndex(2, 0);
requestedRegion.SetSize(0, input->GetDimension(0));
requestedRegion.SetSize(1, input->GetDimension(1));
requestedRegion.SetSize(2, input->GetDimension(2));
input->SetRequestedRegion( & requestedRegion );
}
void mitk::AngleCorrectByPointFilter::GenerateInputRequestedRegion()
{
Superclass::GenerateInputRequestedRegion();
mitk::ImageToImageFilter::InputImagePointer input =
const_cast< mitk::ImageToImageFilter::InputImageType * > ( this->GetInput() );
mitk::Image::Pointer output = this->GetOutput();
Image::RegionType requestedRegion;
requestedRegion = output->GetRequestedRegion();
requestedRegion.SetIndex(0, 0);
requestedRegion.SetIndex(1, 0);
requestedRegion.SetIndex(2, 0);
//requestedRegion.SetIndex(3, 0);
//requestedRegion.SetIndex(4, 0);
requestedRegion.SetSize(0, input->GetDimension(0));
requestedRegion.SetSize(1, input->GetDimension(1));
requestedRegion.SetSize(2, input->GetDimension(2));
//requestedRegion.SetSize(3, output->GetDimension(3));
//requestedRegion.SetSize(4, output->GetNumberOfChannels());
input->SetRequestedRegion( & requestedRegion );
}
void HeightFieldSurfaceClipImageFilter::GenerateData()
{
const Image *inputImage = this->GetInput(0);
const Image *outputImage = this->GetOutput();
m_InputTimeSelector->SetInput(inputImage);
m_OutputTimeSelector->SetInput(outputImage);
Image::RegionType outputRegion = outputImage->GetRequestedRegion();
const TimeGeometry *outputTimeGeometry = outputImage->GetTimeGeometry();
const TimeGeometry *inputTimeGeometry = inputImage->GetTimeGeometry();
ScalarType timeInMS;
int timestep = 0;
int tstart = outputRegion.GetIndex(3);
int tmax = tstart + outputRegion.GetSize(3);
for (unsigned int i = 1; i < this->GetNumberOfInputs(); ++i)
{
Surface *inputSurface = const_cast<Surface *>(dynamic_cast<Surface *>(itk::ProcessObject::GetInput(i)));
if (!outputImage->IsInitialized() || inputSurface == nullptr)
return;
MITK_INFO << "Plane: " << i;
MITK_INFO << "Clipping: Start\n";
// const PlaneGeometry *clippingGeometryOfCurrentTimeStep = nullptr;
int t;
for (t = tstart; t < tmax; ++t)
{
timeInMS = outputTimeGeometry->TimeStepToTimePoint(t);
timestep = inputTimeGeometry->TimePointToTimeStep(timeInMS);
m_InputTimeSelector->SetTimeNr(timestep);
m_InputTimeSelector->UpdateLargestPossibleRegion();
m_OutputTimeSelector->SetTimeNr(t);
m_OutputTimeSelector->UpdateLargestPossibleRegion();
// Compose IndexToWorld transform of image with WorldToIndexTransform of
// clipping data for conversion from image index space to plane index space
AffineTransform3D::Pointer planeWorldToIndexTransform = AffineTransform3D::New();
inputSurface->GetGeometry(t)->GetIndexToWorldTransform()->GetInverse(planeWorldToIndexTransform);
AffineTransform3D::Pointer imageToPlaneTransform = AffineTransform3D::New();
imageToPlaneTransform->SetIdentity();
imageToPlaneTransform->Compose(inputTimeGeometry->GetGeometryForTimeStep(t)->GetIndexToWorldTransform());
imageToPlaneTransform->Compose(planeWorldToIndexTransform);
MITK_INFO << "Accessing ITK function...\n";
if (i == 1)
{
AccessByItk_3(m_InputTimeSelector->GetOutput(),
_InternalComputeClippedImage,
this,
inputSurface->GetVtkPolyData(t),
imageToPlaneTransform);
}
else
{
mitk::Image::Pointer extensionImage = m_OutputTimeSelector->GetOutput()->Clone();
AccessByItk_3(
extensionImage, _InternalComputeClippedImage, this, inputSurface->GetVtkPolyData(t), imageToPlaneTransform);
}
if (m_ClippingMode == CLIPPING_MODE_MULTIPLANE)
m_MultiPlaneValue = m_MultiPlaneValue * 2;
}
}
m_TimeOfHeaderInitialization.Modified();
}