/**********************************************************************************************************************
CConvertibleEnum::Register_Entry -- registers a string and integer value pair as convertible
entry_name -- corresponding string value
value -- integer to convert to/from
**********************************************************************************************************************/
void CConvertibleEnum::Register_Entry( const std::string &entry_name, uint64 value )
{
std::string upper_entry_name;
NStringUtils::To_Upper_Case( entry_name, upper_entry_name );
auto name_iter = NameToValueTable.find( upper_entry_name );
FATAL_ASSERT( name_iter == NameToValueTable.end() );
auto value_iter = ValueToNameTable.find( value );
FATAL_ASSERT( value_iter == ValueToNameTable.end() );
NameToValueTable[ upper_entry_name ] = value;
ValueToNameTable[ value ] = upper_entry_name;
}
virtual void ProcessingMaterial(GLMmodel* model, KScene& scene, const stdext::hash_map<UINT32, UINT32>& nodeToMtl)
{
// Create material
KMaterialLibrary* pML = KMaterialLibrary::GetInstance();
for (UINT32 mi = 0; mi < model->nummaterials; ++mi) {
ISurfaceShader* pSurfShader = pML->CreateMaterial("simple_phong_default.template", model->materials[mi].name);
pSurfShader->SetParam("diffuse_color", model->materials[mi].diffuse, sizeof(float)*3);
if (model->materials[mi].shininess > 3.0f) {
pSurfShader->SetParam("specular_color", model->materials[mi].specular, sizeof(float)*3);
pSurfShader->SetParam("power", &model->materials[mi].shininess, sizeof(float));
}
else {
float specular[3] = {0,0,0};
float pow = 0;
pSurfShader->SetParam("specular_color", specular, sizeof(float)*3);
pSurfShader->SetParam("power", &pow, sizeof(float));
}
pSurfShader->SetParam("opacity", model->materials[mi].transparency, sizeof(float)*3);
if (mUseTexMap && model->materials[mi].diffuse_map) {
pSurfShader->SetParam("diffuse_map", model->materials[mi].diffuse_map, 0);
}
}
for (UINT32 i = 0; i < scene.GetNodeCnt(); ++i) {
KNode* pNode = scene.GetNode(i);
stdext::hash_map<UINT32, UINT32>::const_iterator it = nodeToMtl.find(i);
assert(it != nodeToMtl.end());
pNode->mpSurfShader = pML->OpenMaterial(model->materials[it->second].name);
}
}
void PeakMatchingResults::GetMatches(std::vector<int> &vectFeatureIndices, std::vector<int> &vectMassTagIndices,
std::vector<int> &vectProteinIndices , const std::vector<MultiAlignEngine::MassTags::Protein>* &vectProteins,
const std::vector<MultiAlignEngine::MassTags::MassTag>* &vectMasstags) const
{
// The mass tag database has stored in it all the proteins and mass tags corresponding to the matches.
// So thats where we need to get all the data from.
int numMatches = (int) mvectPeakMatches.size();
std::set <int> massTagID;
stdext::hash_map <int, int > massTagSeen;
// first get all mass tags in the matches into the set of mass tags.
for (int matchNum = 0; matchNum < numMatches; matchNum++)
{
PeakMatch match = mvectPeakMatches[matchNum];
massTagSeen.insert(std::pair<int,int>(match.mintMasstagID, matchNum));
}
// copy hash to mass tag vector
std::vector<int> vectMassTagIDs;
vectMassTagIDs.reserve(massTagSeen.size());
for (stdext::hash_map <int, int >::iterator massTagIter = massTagSeen.begin();
massTagIter != massTagSeen.end(); massTagIter++)
{
vectMassTagIDs.push_back((*massTagIter).first);
}
vectMasstags = mobjMasstagDB.GetMassTagVector();
vectProteins = mobjMasstagDB.GetProteinVector();
const std::multimap<int,int> mapMassTagId2ProteinIndex = mobjMasstagDB.GetMassTagId2ProteinIndexMap();
const stdext::hash_map <int, int > hashMapMassTagId2Index = mobjMasstagDB.GetMassTagId2IndexHash();
// now the relevant mass tags are copied, their ids are copied, the protein names are copied.
// So lets create the table of matches using the three vectors vectFeatureIndices, vectMassTagIndices and
// vectProteinIndices. Basically, vectFeatureIndices will have the index of the ms feature in a peak match.
// the vectMassTagIndices will have the corresponding massTagID, and vectProteinIndices will have the corresponding
// parent protein.
for (std::multimap<int,int>::const_iterator featureIter = mmapFeatureIndex2PeakMatch.begin(); featureIter != mmapFeatureIndex2PeakMatch.end();
featureIter++)
{
int featureIndex = (*featureIter).first;
int peakMatchIndex = (*featureIter).second;
PeakMatch pkMatch = mvectPeakMatches[peakMatchIndex];
int massTagID = pkMatch.mintMasstagID;
stdext::hash_map <int, int>::const_iterator massTagIterHash = hashMapMassTagId2Index.find(massTagID);
int massTagIndex = (*massTagIterHash).second;
// now go through each of the parent proteins of this massTagID and push the triplet into their
// corresponding vectors
for (std::multimap<int,int>::const_iterator massTagIter = mapMassTagId2ProteinIndex.find(massTagID);
massTagIter != mapMassTagId2ProteinIndex.end();
massTagIter++)
{
if ((*massTagIter).first != massTagID)
break;
vectFeatureIndices.push_back(featureIndex);
vectMassTagIndices.push_back(massTagIndex);
vectProteinIndices.push_back((*massTagIter).second);
}
}
}
/**********************************************************************************************************************
CConvertibleEnum::Convert_Internal -- internal function to convert from an integer value to a string
value -- integer to convert from
entry_name -- output parameter for the string value
Returns: success/failure
**********************************************************************************************************************/
bool CConvertibleEnum::Convert_Internal( uint64 value, std::string &entry_name ) const
{
auto iter = ValueToNameTable.find( value );
if ( iter == ValueToNameTable.end() )
{
return false;
}
entry_name = iter->second;
return true;
}
/**********************************************************************************************************************
CConvertibleEnum::Convert_Internal -- internal function to convert from a string to an integer value
entry_name -- string value to convert from
output_value -- output parameter for the integer to convert to
Returns: success/failure
**********************************************************************************************************************/
bool CConvertibleEnum::Convert_Internal( const std::string &entry_name, uint64 &output_value ) const
{
std::string upper_entry_name;
NStringUtils::To_Upper_Case( entry_name, upper_entry_name );
auto iter = NameToValueTable.find( upper_entry_name );
if ( iter == NameToValueTable.end() )
{
return false;
}
output_value = iter->second;
return true;
}
HRESULT __wrapper_FilterGetMessage(
HANDLE hPort,
PFILTER_MESSAGE_HEADER lpMessageBuffer,
DWORD dwMessageBufferSize,
LPOVERLAPPED lpOverlapped )
{
Chess::SyncVarAccess(GetWin32SyncManager()->GetSyncVarFromHandle(hPorte), SVOP::FLT_RW);
if(qsize.find(hPorte) == qsize.end())
qsize[hPorte] = 0;
if(lpOverlapped != NULL){
HRESULT ret = Real_FilterGetMessage(hPort, lpMessageBuffer, dwMessageBufferSize, lpOverlapped);
if(ret == ERROR_IO_PENDING)
qsize[hPorte]++;
return ret;
}
LPOVERLAPPED myOverlapped;
OVERLAPPED tempOverlapped;
memset(&tempOverlapped, 0, sizeof(OVERLAPPED));
myOverlapped = &tempOverlapped;
myOverlapped->hEvent = CreateEvent(NULL, FALSE, FALSE, NULL);
HRESULT ret = Real_FilterGetMessage(hPort, lpMessageBuffer, dwMessageBufferSize, myOverlapped);
//if(ret != S_OK || ret != ERROR_IO_PENDING)
// return ret;
assert(ret != S_OK);
qsize[hPorte]++;
Chess::SyncVarAccess(GetWin32SyncManager()->GetSyncVarFromHandle(hPorte), SVOP::FLT_RW);
while(true){
HRESULT retVal = WaitForSingleObject(myOverlapped->hEvent, 0);
switch(retVal){
case WAIT_OBJECT_0 :
CloseHandle(myOverlapped->hEvent);
return S_OK;
case WAIT_TIMEOUT :
Chess::LocalBacktrack();
break;
default:
fprintf(stderr, "Waiting for event failed in Wrapper FilterGetMessage");
return retVal;
}
}
assert(false);
return S_OK;
}
HRESULT __wrapper_FilterSendMessage(
HANDLE hPort,
LPVOID lpInBuffer,
DWORD dwInBufferSize,
LPVOID lpOutBuffer,
DWORD dwOutBufferSize,
LPDWORD lpBytesReturned )
{
Chess::SyncVarAccess(GetWin32SyncManager()->GetSyncVarFromHandle(hPorte), SVOP::FLT_RW);
if(qsize.find(hPorte) == qsize.end())
qsize[hPorte] = 0;
while(qsize[hPorte] == 0){
Chess::LocalBacktrack();
}
qsize[hPorte]--;
return Real_FilterSendMessage(hPort, lpInBuffer, dwInBufferSize, lpOutBuffer, dwOutBufferSize, lpBytesReturned);
}
DWORD _stdcall AIGetLastTarget(DWORD source) {
iter itr=targets.find(source);
if(itr==targets.end()) return 0;
else return itr->second;
}
DWORD _stdcall AIGetLastAttacker(DWORD target) {
iter itr=sources.find(target);
if(itr==sources.end()) return 0;
else return itr->second;
}