static void PrintOutput(void *arkode_mem, realtype t)
{
long int nst, nfe, nfi, nni;
int flag;
realtype hu;
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1);
flag = ARKodeGetLastStep(arkode_mem, &hu);
check_flag(&flag, "ARKodeGetLastStep", 1);
#if defined(SUNDIALS_EXTENDED_PRECISION)
printf("t = %10.2Le nst = %ld nfe = %ld nfi = %ld nni = %ld", t, nst, nfe, nfi, nni);
printf(" hu = %11.2Le\n\n", hu);
#elif defined(SUNDIALS_DOUBLE_PRECISION)
printf("t = %10.2e nst = %ld nfe = %ld nfi = %ld nni = %ld", t, nst, nfe, nfi, nni);
printf(" hu = %11.2e\n\n", hu);
#else
printf("t = %10.2e nst = %ld nfe = %ld nfi = %ld nni = %ld", t, nst, nfe, nfi, nni);
printf(" hu = %11.2e\n\n", hu);
#endif
}
/* Print current t, step count, order, stepsize, and sampled c1,c2 values */
static void PrintOutput(void *arkode_mem, int my_pe, MPI_Comm comm,
N_Vector u, realtype t)
{
int flag;
realtype hu, *udata, tempu[2];
int npelast;
long int i0, i1, nst;
MPI_Status status;
HYPRE_ParVector uhyp;
npelast = NPEX*NPEY - 1;
uhyp = N_VGetVector_ParHyp(u);
udata = hypre_VectorData(hypre_ParVectorLocalVector(uhyp));
/* Send c1,c2 at top right mesh point to PE 0 */
if (my_pe == npelast) {
i0 = NVARS*MXSUB*MYSUB - 2;
i1 = i0 + 1;
if (npelast != 0)
MPI_Send(&udata[i0], 2, PVEC_REAL_MPI_TYPE, 0, 0, comm);
else {
tempu[0] = udata[i0];
tempu[1] = udata[i1];
}
}
/* On PE 0, receive c1,c2 at top right, then print performance data
and sampled solution values */
if (my_pe == 0) {
if (npelast != 0)
MPI_Recv(&tempu[0], 2, PVEC_REAL_MPI_TYPE, npelast, 0, comm, &status);
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1, my_pe);
flag = ARKodeGetLastStep(arkode_mem, &hu);
check_flag(&flag, "ARKodeGetLastStep", 1, my_pe);
#if defined(SUNDIALS_EXTENDED_PRECISION)
printf("t = %.2Le no. steps = %ld stepsize = %.2Le\n",
t, nst, hu);
printf("At bottom left: c1, c2 = %12.3Le %12.3Le \n", udata[0], udata[1]);
printf("At top right: c1, c2 = %12.3Le %12.3Le \n\n", tempu[0], tempu[1]);
#elif defined(SUNDIALS_DOUBLE_PRECISION)
printf("t = %.2e no. steps = %ld stepsize = %.2e\n",
t, nst, hu);
printf("At bottom left: c1, c2 = %12.3e %12.3e \n", udata[0], udata[1]);
printf("At top right: c1, c2 = %12.3e %12.3e \n\n", tempu[0], tempu[1]);
#else
printf("t = %.2e no. steps = %ld stepsize = %.2e\n",
t, nst, hu);
printf("At bottom left: c1, c2 = %12.3e %12.3e \n", udata[0], udata[1]);
printf("At top right: c1, c2 = %12.3e %12.3e \n\n", tempu[0], tempu[1]);
#endif
}
}
/* Print final statistics contained in iopt */
static void PrintFinalStats(void *arkode_mem)
{
long int lenrw, leniw ;
long int lenrwLS, leniwLS;
long int lenrwBBDP, leniwBBDP, ngevalsBBDP;
long int nst, nfe, nfi, nsetups, nni, ncfn, netf;
long int nli, npe, nps, ncfl, nfeLS;
int flag;
flag = ARKodeGetWorkSpace(arkode_mem, &lenrw, &leniw);
check_flag(&flag, "ARKodeGetWorkSpace", 1, 0);
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1, 0);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1, 0);
flag = ARKodeGetNumLinSolvSetups(arkode_mem, &nsetups);
check_flag(&flag, "ARKodeGetNumLinSolvSetups", 1, 0);
flag = ARKodeGetNumErrTestFails(arkode_mem, &netf);
check_flag(&flag, "ARKodeGetNumErrTestFails", 1, 0);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1, 0);
flag = ARKodeGetNumNonlinSolvConvFails(arkode_mem, &ncfn);
check_flag(&flag, "ARKodeGetNumNonlinSolvConvFails", 1, 0);
flag = ARKSpilsGetWorkSpace(arkode_mem, &lenrwLS, &leniwLS);
check_flag(&flag, "ARKSpilsGetWorkSpace", 1, 0);
flag = ARKSpilsGetNumLinIters(arkode_mem, &nli);
check_flag(&flag, "ARKSpilsGetNumLinIters", 1, 0);
flag = ARKSpilsGetNumPrecEvals(arkode_mem, &npe);
check_flag(&flag, "ARKSpilsGetNumPrecEvals", 1, 0);
flag = ARKSpilsGetNumPrecSolves(arkode_mem, &nps);
check_flag(&flag, "ARKSpilsGetNumPrecSolves", 1, 0);
flag = ARKSpilsGetNumConvFails(arkode_mem, &ncfl);
check_flag(&flag, "ARKSpilsGetNumConvFails", 1, 0);
flag = ARKSpilsGetNumRhsEvals(arkode_mem, &nfeLS);
check_flag(&flag, "ARKSpilsGetNumRhsEvals", 1, 0);
printf("\nFinal Statistics: \n\n");
printf("lenrw = %5ld leniw = %5ld\n", lenrw, leniw);
printf("lenrwls = %5ld leniwls = %5ld\n", lenrwLS, leniwLS);
printf("nst = %5ld nfe = %5ld\n", nst, nfe);
printf("nfe = %5ld nfels = %5ld\n", nfi, nfeLS);
printf("nni = %5ld nli = %5ld\n", nni, nli);
printf("nsetups = %5ld netf = %5ld\n", nsetups, netf);
printf("npe = %5ld nps = %5ld\n", npe, nps);
printf("ncfn = %5ld ncfl = %5ld\n\n", ncfn, ncfl);
flag = ARKBBDPrecGetWorkSpace(arkode_mem, &lenrwBBDP, &leniwBBDP);
check_flag(&flag, "ARKBBDPrecGetWorkSpace", 1, 0);
flag = ARKBBDPrecGetNumGfnEvals(arkode_mem, &ngevalsBBDP);
check_flag(&flag, "ARKBBDPrecGetNumGfnEvals", 1, 0);
printf("In ARKBBDPRE: real/integer local work space sizes = %ld, %ld\n",
lenrwBBDP, leniwBBDP);
printf(" no. flocal evals. = %ld\n",ngevalsBBDP);
}
void Arkode::ArkodeCore()
{
_idid = ARKodeReInit(_arkodeMem, NULL, ARK_fCallback, _tCurrent, _ARK_y);
_idid = ARKodeSetStopTime(_arkodeMem, _tEnd);
_idid = ARKodeSetInitStep(_arkodeMem, 1e-12);
if (_idid < 0)
throw ModelicaSimulationError(SOLVER,"ARKode::ReInit");
bool writeEventOutput = (_settings->getGlobalSettings()->getOutputPointType() == OPT_ALL);
bool writeOutput = !(_settings->getGlobalSettings()->getOutputPointType() == OPT_NONE);
while (_solverStatus & ISolver::CONTINUE && !_interrupt )
{
_ark_rt = ARKode(_arkodeMem, _tEnd, _ARK_y, &_tCurrent, ARK_ONE_STEP);
_idid = ARKodeGetNumSteps(_arkodeMem, &_locStps);
//if (_idid != CV_SUCCESS)
// throw ModelicaSimulationError(SOLVER,"CVodeGetNumSteps failed. The cvode mem pointer is NULL");
_idid = ARKodeGetLastStep(_arkodeMem, &_h);
//if (_idid != CV_SUCCESS)
// throw ModelicaSimulationError(SOLVER,"CVodeGetLastStep failed. The cvode mem pointer is NULL");
//Check if there was at least one output-point within the last solver interval
// -> Write output if true
if (writeOutput)
{
writeArkodeOutput(_tCurrent, _h, _locStps);
}
//set completed step to system and check if terminate was called
if(_continuous_system->stepCompleted(_tCurrent))
_solverStatus = DONE;
// Perform state selection
bool state_selection = stateSelection();
if (state_selection)
_continuous_system->getContinuousStates(_z);
_zeroFound = false;
// Check if step was successful
/*
if (check_flag(&_cv_rt, "CVode", 1))
{
_solverStatus = ISolver::SOLVERERROR;
break;
}*/
// A root was found
if ((_ark_rt == ARK_ROOT_RETURN) && !isInterrupted())
{
// CVode is setting _tCurrent to the time where the first event occurred
double _abs = fabs(_tLastEvent - _tCurrent);
_zeroFound = true;
if ((_abs < 1e-3) && _event_n == 0)
{
_tLastEvent = _tCurrent;
_event_n++;
}
else if ((_abs < 1e-3) && (_event_n >= 1 && _event_n < 500))
{
_event_n++;
}
else if ((_abs >= 1e-3))
{
//restart event counter
_tLastEvent = _tCurrent;
_event_n = 0;
}
else
throw ModelicaSimulationError(EVENT_HANDLING,"Number of events exceeded in time interval " + to_string(_abs) + " at time " + to_string(_tCurrent));
// CVode has interpolated the states at time 'tCurrent'
_time_system->setTime(_tCurrent);
// To get steep steps in the result file, two value points (P1 and P2) must be added
//
// Y | (P2) X...........
// | :
// | :
// |........X (P1)
// |---------------------------------->
// | ^ t
// _tCurrent
// Write the values of (P1)
if (writeEventOutput)
{
_continuous_system->evaluateAll(IContinuous::CONTINUOUS);
writeToFile(0, _tCurrent, _h);
}
_idid = ARKodeGetRootInfo(_arkodeMem, _zeroSign);
for (int i = 0; i < _dimZeroFunc; i++)
_events[i] = bool(_zeroSign[i]);
if (_mixed_system->handleSystemEvents(_events))
{
// State variables were reinitialized, thus we have to give these values to the cvode-solver
// Take care about the memory regions, _z is the same like _CV_y
_continuous_system->getContinuousStates(_z);
}
}
if ((_zeroFound || state_selection)&& !isInterrupted())
{
if (writeEventOutput)
{
_continuous_system->evaluateAll(IContinuous::CONTINUOUS);
writeToFile(0, _tCurrent, _h);
}
_idid = ARKodeReInit(_arkodeMem, NULL, ARK_fCallback, _tCurrent, _ARK_y);
if (_idid < 0)
throw ModelicaSimulationError(SOLVER,"CVode::ReInit()");
// Der Eventzeitpunkt kann auf der Endzeit liegen (Time-Events). In diesem Fall wird der Solver beendet, da CVode sonst eine interne Warnung
if (_tCurrent == _tEnd)
_ark_rt = ARK_TSTOP_RETURN;
}
++_outStps;
_tLastSuccess = _tCurrent;
if (_ark_rt == ARK_TSTOP_RETURN)
{
_time_system->setTime(_tEnd);
//Solver has finished calculation - calculate the final values
_continuous_system->setContinuousStates(NV_DATA_S(_ARK_y));
_continuous_system->evaluateAll(IContinuous::CONTINUOUS);
if(writeOutput)
writeToFile(0, _tEnd, _h);
_accStps += _locStps;
_solverStatus = DONE;
}
}
}
/* Main Program */
int main()
{
/* general problem parameters */
realtype T0 = RCONST(0.0); /* initial time */
realtype Tf = RCONST(10.0); /* final time */
realtype dTout = RCONST(1.0); /* time between outputs */
long int NEQ = 3; /* number of dependent vars. */
int Nt = ceil(Tf/dTout); /* number of output times */
int test = 2; /* test problem to run */
realtype reltol = 1.0e-6; /* tolerances */
realtype abstol = 1.0e-10;
realtype a, b, ep, u0, v0, w0;
/* general problem variables */
int flag; /* reusable error-checking flag */
N_Vector y = NULL; /* empty vector for storing solution */
void *arkode_mem = NULL; /* empty ARKode memory structure */
realtype rdata[3];
FILE *UFID;
realtype t, tout;
int iout;
long int nst, nst_a, nfe, nfi, nsetups, nje, nfeLS, nni, ncfn, netf;
/* set up the test problem according to the desired test */
if (test == 1) {
u0 = RCONST(3.9);
v0 = RCONST(1.1);
w0 = RCONST(2.8);
a = RCONST(1.2);
b = RCONST(2.5);
ep = RCONST(1.0e-5);
} else if (test == 3) {
u0 = RCONST(3.0);
v0 = RCONST(3.0);
w0 = RCONST(3.5);
a = RCONST(0.5);
b = RCONST(3.0);
ep = RCONST(5.0e-4);
} else {
u0 = RCONST(1.2);
v0 = RCONST(3.1);
w0 = RCONST(3.0);
a = RCONST(1.0);
b = RCONST(3.5);
ep = RCONST(5.0e-6);
}
/* Initial problem output */
printf("\nBrusselator ODE test problem:\n");
printf(" initial conditions: u0 = %g, v0 = %g, w0 = %g\n",u0,v0,w0);
printf(" problem parameters: a = %g, b = %g, ep = %g\n",a,b,ep);
printf(" reltol = %.1e, abstol = %.1e\n\n",reltol,abstol);
/* Initialize data structures */
rdata[0] = a; /* set user data */
rdata[1] = b;
rdata[2] = ep;
y = N_VNew_Serial(NEQ); /* Create serial vector for solution */
if (check_flag((void *)y, "N_VNew_Serial", 0)) return 1;
NV_Ith_S(y,0) = u0; /* Set initial conditions */
NV_Ith_S(y,1) = v0;
NV_Ith_S(y,2) = w0;
arkode_mem = ARKodeCreate(); /* Create the solver memory */
if (check_flag((void *)arkode_mem, "ARKodeCreate", 0)) return 1;
/* Call ARKodeInit to initialize the integrator memory and specify the
hand-side side function in y'=f(t,y), the inital time T0, and
the initial dependent variable vector y. Note: since this
problem is fully implicit, we set f_E to NULL and f_I to f. */
flag = ARKodeInit(arkode_mem, NULL, f, T0, y);
if (check_flag(&flag, "ARKodeInit", 1)) return 1;
/* Set routines */
flag = ARKodeSetUserData(arkode_mem, (void *) rdata); /* Pass rdata to user functions */
if (check_flag(&flag, "ARKodeSetUserData", 1)) return 1;
flag = ARKodeSStolerances(arkode_mem, reltol, abstol); /* Specify tolerances */
if (check_flag(&flag, "ARKodeSStolerances", 1)) return 1;
/* Linear solver specification */
flag = ARKDense(arkode_mem, NEQ); /* Specify dense linear solver */
if (check_flag(&flag, "ARKDense", 1)) return 1;
flag = ARKDlsSetDenseJacFn(arkode_mem, Jac); /* Set Jacobian routine */
if (check_flag(&flag, "ARKDlsSetDenseJacFn", 1)) return 1;
/* Open output stream for results, output comment line */
UFID = fopen("solution.txt","w");
fprintf(UFID,"# t u v w\n");
/* output initial condition to disk */
fprintf(UFID," %.16e %.16e %.16e %.16e\n",
T0, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
/* Main time-stepping loop: calls ARKode to perform the integration, then
prints results. Stops when the final time has been reached */
t = T0;
tout = T0+dTout;
printf(" t u v w\n");
printf(" -------------------------------------------\n");
for (iout=0; iout<Nt; iout++) {
flag = ARKode(arkode_mem, tout, y, &t, ARK_NORMAL); /* call integrator */
if (check_flag(&flag, "ARKode", 1)) break;
printf(" %10.6f %10.6f %10.6f %10.6f\n", /* access/print solution */
t, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
fprintf(UFID," %.16e %.16e %.16e %.16e\n",
t, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
if (flag >= 0) { /* successful solve: update time */
tout += dTout;
tout = (tout > Tf) ? Tf : tout;
} else { /* unsuccessful solve: break */
fprintf(stderr,"Solver failure, stopping integration\n");
break;
}
}
printf(" -------------------------------------------\n");
fclose(UFID);
/* Print some final statistics */
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1);
flag = ARKodeGetNumStepAttempts(arkode_mem, &nst_a);
check_flag(&flag, "ARKodeGetNumStepAttempts", 1);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1);
flag = ARKodeGetNumLinSolvSetups(arkode_mem, &nsetups);
check_flag(&flag, "ARKodeGetNumLinSolvSetups", 1);
flag = ARKodeGetNumErrTestFails(arkode_mem, &netf);
check_flag(&flag, "ARKodeGetNumErrTestFails", 1);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1);
flag = ARKodeGetNumNonlinSolvConvFails(arkode_mem, &ncfn);
check_flag(&flag, "ARKodeGetNumNonlinSolvConvFails", 1);
flag = ARKDlsGetNumJacEvals(arkode_mem, &nje);
check_flag(&flag, "ARKDlsGetNumJacEvals", 1);
flag = ARKDlsGetNumRhsEvals(arkode_mem, &nfeLS);
check_flag(&flag, "ARKDlsGetNumRhsEvals", 1);
printf("\nFinal Solver Statistics:\n");
printf(" Internal solver steps = %li (attempted = %li)\n", nst, nst_a);
printf(" Total RHS evals: Fe = %li, Fi = %li\n", nfe, nfi);
printf(" Total linear solver setups = %li\n", nsetups);
printf(" Total RHS evals for setting up the linear system = %li\n", nfeLS);
printf(" Total number of Jacobian evaluations = %li\n", nje);
printf(" Total number of Newton iterations = %li\n", nni);
printf(" Total number of linear solver convergence failures = %li\n", ncfn);
printf(" Total number of error test failures = %li\n\n", netf);
/* Clean up and return with successful completion */
N_VDestroy_Serial(y); /* Free y vector */
ARKodeFree(&arkode_mem); /* Free integrator memory */
return 0;
}
static void PrintFinalStats(void *arkode_mem)
{
long int lenrw, leniw ;
long int lenrwLS, leniwLS;
long int nst, nfe, nfi, nsetups, nni, ncfn, netf;
long int nli, npe, nps, ncfl, nfeLS;
int flag;
realtype avdim;
flag = ARKodeGetWorkSpace(arkode_mem, &lenrw, &leniw);
check_flag(&flag, "ARKodeGetWorkSpace", 1);
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1);
flag = ARKodeGetNumLinSolvSetups(arkode_mem, &nsetups);
check_flag(&flag, "ARKodeGetNumLinSolvSetups", 1);
flag = ARKodeGetNumErrTestFails(arkode_mem, &netf);
check_flag(&flag, "ARKodeGetNumErrTestFails", 1);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1);
flag = ARKodeGetNumNonlinSolvConvFails(arkode_mem, &ncfn);
check_flag(&flag, "ARKodeGetNumNonlinSolvConvFails", 1);
flag = ARKSpilsGetWorkSpace(arkode_mem, &lenrwLS, &leniwLS);
check_flag(&flag, "ARKSpilsGetWorkSpace", 1);
flag = ARKSpilsGetNumLinIters(arkode_mem, &nli);
check_flag(&flag, "ARKSpilsGetNumLinIters", 1);
flag = ARKSpilsGetNumPrecEvals(arkode_mem, &npe);
check_flag(&flag, "ARKSpilsGetNumPrecEvals", 1);
flag = ARKSpilsGetNumPrecSolves(arkode_mem, &nps);
check_flag(&flag, "ARKSpilsGetNumPrecSolves", 1);
flag = ARKSpilsGetNumConvFails(arkode_mem, &ncfl);
check_flag(&flag, "ARKSpilsGetNumConvFails", 1);
flag = ARKSpilsGetNumRhsEvals(arkode_mem, &nfeLS);
check_flag(&flag, "ARKSpilsGetNumRhsEvals", 1);
printf("\n\n Final statistics for this run:\n\n");
printf(" ARKode real workspace length = %4ld \n", lenrw);
printf(" ARKode integer workspace length = %4ld \n", leniw);
printf(" ARKSPGMR real workspace length = %4ld \n", lenrwLS);
printf(" ARKSPGMR integer workspace length = %4ld \n", leniwLS);
printf(" Number of steps = %4ld \n", nst);
printf(" Number of f-s (explicit) = %4ld \n", nfe);
printf(" Number of f-s (implicit) = %4ld \n", nfi);
printf(" Number of f-s (SPGMR) = %4ld \n", nfeLS);
printf(" Number of f-s (TOTAL) = %4ld \n", nfe + nfeLS);
printf(" Number of setups = %4ld \n", nsetups);
printf(" Number of nonlinear iterations = %4ld \n", nni);
printf(" Number of linear iterations = %4ld \n", nli);
printf(" Number of preconditioner evaluations = %4ld \n", npe);
printf(" Number of preconditioner solves = %4ld \n", nps);
printf(" Number of error test failures = %4ld \n", netf);
printf(" Number of nonlinear conv. failures = %4ld \n", ncfn);
printf(" Number of linear convergence failures = %4ld \n", ncfl);
avdim = (nni > 0) ? ((realtype)nli)/((realtype)nni) : ZERO;
#if defined(SUNDIALS_EXTENDED_PRECISION)
printf(" Average Krylov subspace dimension = %.3Lf \n", avdim);
#else
printf(" Average Krylov subspace dimension = %.3f \n", avdim);
#endif
printf("\n\n--------------------------------------------------------------");
printf("--------------\n");
printf( "--------------------------------------------------------------");
printf("--------------\n");
}
/* Main Program */
int main()
{
/* general problem parameters */
realtype T0 = RCONST(0.0); /* initial time */
realtype Tf = RCONST(10.0); /* final time */
int Nt = 100; /* total number of output times */
int Nvar = 3; /* number of solution fields */
UserData udata = NULL;
realtype *data;
long int N = 201; /* spatial mesh size */
realtype a = 0.6; /* problem parameters */
realtype b = 2.0;
realtype du = 0.025;
realtype dv = 0.025;
realtype dw = 0.025;
realtype ep = 1.0e-5; /* stiffness parameter */
realtype reltol = 1.0e-6; /* tolerances */
realtype abstol = 1.0e-10;
long int NEQ, i;
/* general problem variables */
int flag; /* reusable error-checking flag */
N_Vector y = NULL; /* empty vector for storing solution */
N_Vector umask = NULL; /* empty mask vectors for viewing solution components */
N_Vector vmask = NULL;
N_Vector wmask = NULL;
void *arkode_mem = NULL; /* empty ARKode memory structure */
realtype pi, t, dTout, tout, u, v, w;
FILE *FID, *UFID, *VFID, *WFID;
int iout;
long int nst, nst_a, nfe, nfi, nsetups, nje, nfeLS, nni, ncfn, netf;
/* allocate udata structure */
udata = (UserData) malloc(sizeof(*udata));
if (check_flag((void *) udata, "malloc", 2)) return 1;
/* store the inputs in the UserData structure */
udata->N = N;
udata->a = a;
udata->b = b;
udata->du = du;
udata->dv = dv;
udata->dw = dw;
udata->ep = ep;
/* set total allocated vector length */
NEQ = Nvar*udata->N;
/* Initial problem output */
printf("\n1D Brusselator PDE test problem:\n");
printf(" N = %li, NEQ = %li\n", udata->N, NEQ);
printf(" problem parameters: a = %g, b = %g, ep = %g\n",
udata->a, udata->b, udata->ep);
printf(" diffusion coefficients: du = %g, dv = %g, dw = %g\n",
udata->du, udata->dv, udata->dw);
printf(" reltol = %.1e, abstol = %.1e\n\n", reltol, abstol);
/* Initialize data structures */
y = N_VNew_Serial(NEQ); /* Create serial vector for solution */
if (check_flag((void *)y, "N_VNew_Serial", 0)) return 1;
udata->dx = RCONST(1.0)/(N-1); /* set spatial mesh spacing */
data = N_VGetArrayPointer(y); /* Access data array for new NVector y */
if (check_flag((void *)data, "N_VGetArrayPointer", 0)) return 1;
umask = N_VNew_Serial(NEQ); /* Create serial vector masks */
if (check_flag((void *)umask, "N_VNew_Serial", 0)) return 1;
vmask = N_VNew_Serial(NEQ);
if (check_flag((void *)vmask, "N_VNew_Serial", 0)) return 1;
wmask = N_VNew_Serial(NEQ);
if (check_flag((void *)wmask, "N_VNew_Serial", 0)) return 1;
/* Set initial conditions into y */
pi = RCONST(4.0)*atan(RCONST(1.0));
for (i=0; i<N; i++) {
data[IDX(i,0)] = a + RCONST(0.1)*sin(pi*i*udata->dx); /* u */
data[IDX(i,1)] = b/a + RCONST(0.1)*sin(pi*i*udata->dx); /* v */
data[IDX(i,2)] = b + RCONST(0.1)*sin(pi*i*udata->dx); /* w */
}
/* Set mask array values for each solution component */
N_VConst(0.0, umask);
data = N_VGetArrayPointer(umask);
if (check_flag((void *)data, "N_VGetArrayPointer", 0)) return 1;
for (i=0; i<N; i++) data[IDX(i,0)] = RCONST(1.0);
N_VConst(0.0, vmask);
data = N_VGetArrayPointer(vmask);
if (check_flag((void *)data, "N_VGetArrayPointer", 0)) return 1;
for (i=0; i<N; i++) data[IDX(i,1)] = RCONST(1.0);
N_VConst(0.0, wmask);
data = N_VGetArrayPointer(wmask);
if (check_flag((void *)data, "N_VGetArrayPointer", 0)) return 1;
for (i=0; i<N; i++) data[IDX(i,2)] = RCONST(1.0);
/* Create the solver memory */
arkode_mem = ARKodeCreate();
if (check_flag((void *)arkode_mem, "ARKodeCreate", 0)) return 1;
/* Call ARKodeInit to initialize the integrator memory and specify the
right-hand side function in y'=f(t,y), the inital time T0, and
the initial dependent variable vector y. Note: since this
problem is fully implicit, we set f_E to NULL and f_I to f. */
flag = ARKodeInit(arkode_mem, NULL, f, T0, y);
if (check_flag(&flag, "ARKodeInit", 1)) return 1;
/* Set routines */
flag = ARKodeSetUserData(arkode_mem, (void *) udata); /* Pass udata to user functions */
if (check_flag(&flag, "ARKodeSetUserData", 1)) return 1;
flag = ARKodeSStolerances(arkode_mem, reltol, abstol); /* Specify tolerances */
if (check_flag(&flag, "ARKodeSStolerances", 1)) return 1;
/* Linear solver specification */
flag = ARKBand(arkode_mem, NEQ, 4, 4); /* Specify the band linear solver */
if (check_flag(&flag, "ARKBand", 1)) return 1;
flag = ARKDlsSetBandJacFn(arkode_mem, Jac); /* Set the Jacobian routine */
if (check_flag(&flag, "ARKDlsSetBandJacFn", 1)) return 1;
/* output spatial mesh to disk */
FID = fopen("bruss_mesh.txt","w");
for (i=0; i<N; i++) fprintf(FID," %.16e\n", udata->dx*i);
fclose(FID);
/* Open output streams for results, access data array */
UFID=fopen("bruss_u.txt","w");
VFID=fopen("bruss_v.txt","w");
WFID=fopen("bruss_w.txt","w");
/* output initial condition to disk */
data = N_VGetArrayPointer(y);
if (check_flag((void *)data, "N_VGetArrayPointer", 0)) return 1;
for (i=0; i<N; i++) fprintf(UFID," %.16e", data[IDX(i,0)]);
for (i=0; i<N; i++) fprintf(VFID," %.16e", data[IDX(i,1)]);
for (i=0; i<N; i++) fprintf(WFID," %.16e", data[IDX(i,2)]);
fprintf(UFID,"\n");
fprintf(VFID,"\n");
fprintf(WFID,"\n");
/* Main time-stepping loop: calls ARKode to perform the integration, then
prints results. Stops when the final time has been reached */
t = T0;
dTout = (Tf-T0)/Nt;
tout = T0+dTout;
printf(" t ||u||_rms ||v||_rms ||w||_rms\n");
printf(" ----------------------------------------------\n");
for (iout=0; iout<Nt; iout++) {
flag = ARKode(arkode_mem, tout, y, &t, ARK_NORMAL); /* call integrator */
if (check_flag(&flag, "ARKode", 1)) break;
u = N_VWL2Norm(y,umask); /* access/print solution statistics */
u = SUNRsqrt(u*u/N);
v = N_VWL2Norm(y,vmask);
v = SUNRsqrt(v*v/N);
w = N_VWL2Norm(y,wmask);
w = SUNRsqrt(w*w/N);
printf(" %10.6f %10.6f %10.6f %10.6f\n", t, u, v, w);
if (flag >= 0) { /* successful solve: update output time */
tout += dTout;
tout = (tout > Tf) ? Tf : tout;
} else { /* unsuccessful solve: break */
fprintf(stderr,"Solver failure, stopping integration\n");
break;
}
/* output results to disk */
for (i=0; i<N; i++) fprintf(UFID," %.16e", data[IDX(i,0)]);
for (i=0; i<N; i++) fprintf(VFID," %.16e", data[IDX(i,1)]);
for (i=0; i<N; i++) fprintf(WFID," %.16e", data[IDX(i,2)]);
fprintf(UFID,"\n");
fprintf(VFID,"\n");
fprintf(WFID,"\n");
}
printf(" ----------------------------------------------\n");
fclose(UFID);
fclose(VFID);
fclose(WFID);
/* Print some final statistics */
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1);
flag = ARKodeGetNumStepAttempts(arkode_mem, &nst_a);
check_flag(&flag, "ARKodeGetNumStepAttempts", 1);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1);
flag = ARKodeGetNumLinSolvSetups(arkode_mem, &nsetups);
check_flag(&flag, "ARKodeGetNumLinSolvSetups", 1);
flag = ARKodeGetNumErrTestFails(arkode_mem, &netf);
check_flag(&flag, "ARKodeGetNumErrTestFails", 1);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1);
flag = ARKodeGetNumNonlinSolvConvFails(arkode_mem, &ncfn);
check_flag(&flag, "ARKodeGetNumNonlinSolvConvFails", 1);
flag = ARKDlsGetNumJacEvals(arkode_mem, &nje);
check_flag(&flag, "ARKDlsGetNumJacEvals", 1);
flag = ARKDlsGetNumRhsEvals(arkode_mem, &nfeLS);
check_flag(&flag, "ARKDlsGetNumRhsEvals", 1);
printf("\nFinal Solver Statistics:\n");
printf(" Internal solver steps = %li (attempted = %li)\n", nst, nst_a);
printf(" Total RHS evals: Fe = %li, Fi = %li\n", nfe, nfi);
printf(" Total linear solver setups = %li\n", nsetups);
printf(" Total RHS evals for setting up the linear system = %li\n", nfeLS);
printf(" Total number of Jacobian evaluations = %li\n", nje);
printf(" Total number of Newton iterations = %li\n", nni);
printf(" Total number of nonlinear solver convergence failures = %li\n", ncfn);
printf(" Total number of error test failures = %li\n\n", netf);
/* Clean up and return with successful completion */
N_VDestroy_Serial(y); /* Free vectors */
N_VDestroy_Serial(umask);
N_VDestroy_Serial(vmask);
N_VDestroy_Serial(wmask);
free(udata); /* Free user data */
ARKodeFree(&arkode_mem); /* Free integrator memory */
return 0;
}
/* Main Program */
int main()
{
/* general problem parameters */
realtype T0 = RCONST(0.0); /* initial time */
realtype T1 = RCONST(0.4); /* first output time */
realtype TMult = RCONST(10.0); /* output time multiplication factor */
int Nt = 12; /* total number of output times */
long int NEQ = 3; /* number of dependent vars. */
realtype reltol;
int rootsfound[2];
long int nst, nst_a, nfe, nfi, nsetups;
long int nje, nfeLS, nni, ncfn, netf, nge;
int flag, rtflag; /* reusable error-checking flags */
FILE *UFID;
realtype t, tout;
int iout;
/* general problem variables */
N_Vector y = NULL; /* empty vector for storing solution */
N_Vector atols = NULL; /* empty vector for absolute tolerances */
void *arkode_mem = NULL; /* empty ARKode memory structure */
/* set up the initial conditions */
realtype u0 = RCONST(1.0);
realtype v0 = RCONST(0.0);
realtype w0 = RCONST(0.0);
/* Initial problem output */
printf("\nRobertson ODE test problem (with rootfinding):\n");
printf(" initial conditions: u0 = %g, v0 = %g, w0 = %g\n",u0,v0,w0);
/* Initialize data structures */
y = N_VNew_Serial(NEQ); /* Create serial vector for solution */
if (check_flag((void *) y, "N_VNew_Serial", 0)) return 1;
atols = N_VNew_Serial(NEQ); /* Create serial vector absolute tolerances */
if (check_flag((void *) atols, "N_VNew_Serial", 0)) return 1;
NV_Ith_S(y,0) = u0; /* Set initial conditions into y */
NV_Ith_S(y,1) = v0;
NV_Ith_S(y,2) = w0;
arkode_mem = ARKodeCreate(); /* Create the solver memory */
if (check_flag((void *)arkode_mem, "ARKodeCreate", 0)) return 1;
/* Call ARKodeInit to initialize the integrator memory and specify the
hand-side side function in y'=f(t,y), the inital time T0, and
the initial dependent variable vector y. Note: since this
problem is fully implicit, we set f_E to NULL and f_I to f. */
flag = ARKodeInit(arkode_mem, NULL, f, T0, y);
if (check_flag(&flag, "ARKodeInit", 1)) return 1;
/* Set tolerances */
reltol = RCONST(1.0e-4);
NV_Ith_S(atols,0) = RCONST(1.0e-8);
NV_Ith_S(atols,1) = RCONST(1.0e-11);
NV_Ith_S(atols,2) = RCONST(1.0e-8);
/* Set routines */
flag = ARKodeSetMaxErrTestFails(arkode_mem, 20); /* Increase max error test fails */
if (check_flag(&flag, "ARKodeSetMaxErrTestFails", 1)) return 1;
flag = ARKodeSetMaxNonlinIters(arkode_mem, 8); /* Increase max nonlinear iterations */
if (check_flag(&flag, "ARKodeSetMaxNonlinIters", 1)) return 1;
flag = ARKodeSetNonlinConvCoef(arkode_mem, 1.e-7); /* Update nonlinear solver convergence coeff. */
if (check_flag(&flag, "ARKodeSetNonlinConvCoef", 1)) return 1;
flag = ARKodeSetMaxNumSteps(arkode_mem, 100000); /* Increase max number of steps */
if (check_flag(&flag, "ARKodeSetMaxNumSteps", 1)) return 1;
flag = ARKodeSVtolerances(arkode_mem, reltol, atols); /* Specify tolerances */
if (check_flag(&flag, "ARKodeSStolerances", 1)) return 1;
/* Specify the root-finding function, having 2 equations */
flag = ARKodeRootInit(arkode_mem, 2, g);
if (check_flag(&flag, "ARKodeRootInit", 1)) return 1;
/* Linear solver specification */
flag = ARKDense(arkode_mem, NEQ); /* Specify dense linear solver */
if (check_flag(&flag, "ARKDense", 1)) return 1;
flag = ARKDlsSetDenseJacFn(arkode_mem, Jac); /* Set the Jacobian routine */
if (check_flag(&flag, "ARKDlsSetDenseJacFn", 1)) return 1;
/* Open output stream for results, output comment line */
UFID = fopen("solution.txt","w");
fprintf(UFID,"# t u v w\n");
/* output initial condition to disk */
fprintf(UFID," %.16e %.16e %.16e %.16e\n",
T0, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
/* Main time-stepping loop: calls ARKode to perform the integration, then
prints results. Stops when the final time has been reached */
t = T0;
printf(" t u v w\n");
printf(" -----------------------------------------------------\n");
printf(" %12.5e %12.5e %12.5e %12.5e\n",
t, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
tout = T1;
iout = 0;
while(1) {
flag = ARKode(arkode_mem, tout, y, &t, ARK_NORMAL); /* call integrator */
if (check_flag(&flag, "ARKode", 1)) break;
printf(" %12.5e %12.5e %12.5e %12.5e\n", t, /* access/print solution */
NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
fprintf(UFID," %.16e %.16e %.16e %.16e\n",
t, NV_Ith_S(y,0), NV_Ith_S(y,1), NV_Ith_S(y,2));
if (flag == ARK_ROOT_RETURN) { /* check if a root was found */
rtflag = ARKodeGetRootInfo(arkode_mem, rootsfound);
if (check_flag(&rtflag, "ARKodeGetRootInfo", 1)) return 1;
printf(" rootsfound[] = %3d %3d\n",
rootsfound[0], rootsfound[1]);
}
if (flag >= 0) { /* successful solve: update output time */
iout++;
tout *= TMult;
} else { /* unsuccessful solve: break */
fprintf(stderr,"Solver failure, stopping integration\n");
break;
}
if (iout == Nt) break; /* stop after enough outputs */
}
printf(" -----------------------------------------------------\n");
fclose(UFID);
/* Print some final statistics */
flag = ARKodeGetNumSteps(arkode_mem, &nst);
check_flag(&flag, "ARKodeGetNumSteps", 1);
flag = ARKodeGetNumStepAttempts(arkode_mem, &nst_a);
check_flag(&flag, "ARKodeGetNumStepAttempts", 1);
flag = ARKodeGetNumRhsEvals(arkode_mem, &nfe, &nfi);
check_flag(&flag, "ARKodeGetNumRhsEvals", 1);
flag = ARKodeGetNumLinSolvSetups(arkode_mem, &nsetups);
check_flag(&flag, "ARKodeGetNumLinSolvSetups", 1);
flag = ARKodeGetNumErrTestFails(arkode_mem, &netf);
check_flag(&flag, "ARKodeGetNumErrTestFails", 1);
flag = ARKodeGetNumNonlinSolvIters(arkode_mem, &nni);
check_flag(&flag, "ARKodeGetNumNonlinSolvIters", 1);
flag = ARKodeGetNumNonlinSolvConvFails(arkode_mem, &ncfn);
check_flag(&flag, "ARKodeGetNumNonlinSolvConvFails", 1);
flag = ARKDlsGetNumJacEvals(arkode_mem, &nje);
check_flag(&flag, "ARKDlsGetNumJacEvals", 1);
flag = ARKDlsGetNumRhsEvals(arkode_mem, &nfeLS);
check_flag(&flag, "ARKDlsGetNumRhsEvals", 1);
flag = ARKodeGetNumGEvals(arkode_mem, &nge);
check_flag(&flag, "ARKodeGetNumGEvals", 1);
printf("\nFinal Solver Statistics:\n");
printf(" Internal solver steps = %li (attempted = %li)\n",
nst, nst_a);
printf(" Total RHS evals: Fe = %li, Fi = %li\n", nfe, nfi);
printf(" Total linear solver setups = %li\n", nsetups);
printf(" Total RHS evals for setting up the linear system = %li\n", nfeLS);
printf(" Total number of Jacobian evaluations = %li\n", nje);
printf(" Total number of Newton iterations = %li\n", nni);
printf(" Total root-function g evals = %li\n", nge);
printf(" Total number of nonlinear solver convergence failures = %li\n", ncfn);
printf(" Total number of error test failures = %li\n", netf);
/* Clean up and return with successful completion */
N_VDestroy_Serial(y); /* Free y vector */
ARKodeFree(&arkode_mem); /* Free integrator memory */
return 0;
}