CPropertyList::CPropertyList(wxWindow * parent, wxWindowID id, const wxPoint & pt,
const wxSize & sz, long style):wxListCtrl(parent, id, pt, sz, style)
{
m_pti = NULL;
AddColumns();
}
ecPropertyListCtrl::ecPropertyListCtrl(wxWindow* parent, wxWindowID id, const wxPoint& pt,
const wxSize& sz, long style):
wxListCtrl(parent, id, pt, sz, style)
{
if (!wxGetApp().GetSettings().GetWindowSettings().GetUseDefaults() &&
wxGetApp().GetSettings().GetWindowSettings().GetFont(wxT("Properties")).Ok())
{
SetFont(wxGetApp().GetSettings().GetWindowSettings().GetFont(wxT("Properties")));
}
m_f[0]=0.25;
m_f[1]=0.75;
m_pti = NULL;
m_nFirstProperty = 0;
m_nOnSizeRecursionCount = 0;
AddColumns();
#if 0
int j;
int i = 0;
for (j = 0; j < 4; j++)
{
// Insert some dummy items
wxListItem info;
info.m_text = _("URL");
info.m_mask = wxLIST_MASK_TEXT ; // | wxLIST_MASK_IMAGE | wxLIST_MASK_DATA;
info.m_itemId = i;
info.m_image = -1;
//info.m_data = (long) doc;
long item = InsertItem(info);
SetItem(i, 1, _("redirects/interrupts.html"));
i ++;
info.m_text = _("Enabled");
info.m_mask = wxLIST_MASK_TEXT ; // | wxLIST_MASK_IMAGE | wxLIST_MASK_DATA;
info.m_itemId = i;
info.m_image = -1;
//info.m_data = (long) doc;
item = InsertItem(info);
SetItem(i, 1, _("True"));
i ++;
}
#endif
}
wxWindow* uwTreeListFactory::Create()
{
if( Tree != NULL )
return Tree;
Tree = new uwTreeList(Parent);
AddColumns();
AddData();
Tree->SetVerticalAlign( bVerticalAlign );
Tree->SetDataTree( *DataTree );
Tree->ExpandRoot();
return Tree;
}
void ProcessPage_OnViewSelectColumns(void)
{
int i;
if (DialogBoxW(hInst, MAKEINTRESOURCEW(IDD_COLUMNS_DIALOG), hMainWnd, ColumnsDialogWndProc) == IDOK)
{
for (i=Header_GetItemCount(hProcessPageHeaderCtrl)-1; i>=0; i--)
{
(void)ListView_DeleteColumn(hProcessPageListCtrl, i);
}
for (i=0; i<COLUMN_NMAX; i++) {
TaskManagerSettings.ColumnOrderArray[i] = i;
TaskManagerSettings.ColumnSizeArray[i] = ColumnPresets[i].size;
}
AddColumns();
}
}
/////////////////////////////////////////////////////////////////////////////////////
// Build full alignment -> qa->s[k][h] and ta->s[k][h]
/////////////////////////////////////////////////////////////////////////////////////
void FullAlignment::Build(HMM* q, Hit& hit, const int nseqdis, const float S[20][20]) {
int step;
char prev_state = MM, state = MM;
int n;
int hh;
int k;
identities = 0; // number of identical residues in query and template sequence
score_sim = 0.0f; // substitution matrix similarity score between query and template
ClearSymbols();
// Set up half-alignments
// n is the sequence index up to which sequences are prepared for display
n = imin(q->n_display,
nseqdis + (q->nss_dssp >= 0) + (q->nsa_dssp >= 0) + (q->nss_pred >= 0)
+ (q->nss_conf >= 0) + (q->ncons >= 0));
qa->Set(q->name, q->seq, q->sname, n, q->L, q->nss_dssp, q->nss_pred,
q->nss_conf, q->nsa_dssp, q->ncons);
n = imax(hit.nfirst + 1, imin(hit.n_display,
nseqdis + (hit.nss_dssp >= 0) + (hit.nsa_dssp >= 0)
+ (hit.nss_pred >= 0) + (hit.nss_conf >= 0) + (hit.ncons >= 0)));
ta->Set(hit.name, hit.seq, hit.sname, n, hit.L, hit.nss_dssp, hit.nss_pred,
hit.nss_conf, hit.nsa_dssp, hit.ncons);
// printf("HMM: %s\nstep nst i j state hq ht\n",hit.name);
for (step = hit.nsteps; step >= 1; step--) {
prev_state = state;
state = hit.states[step];
// Add column to alignment and compute identities and sequence-sequence similarity score
if (hit.P_posterior)
AddColumns(hit.i[step], hit.j[step], prev_state, state, hit.S[step],
hit.P_posterior[step]);
else
AddColumns(hit.i[step], hit.j[step], prev_state, state, hit.S[step], 0.0);
if (state == MM) {
char qc = qa->seq[q->nfirst][qa->m[q->nfirst][hit.i[step]]];
char tc = ta->seq[hit.nfirst][ta->m[hit.nfirst][hit.j[step]]];
if (qc == tc && qc != '-')
identities++; // count identical amino acids
score_sim += S[(int) aa2i(qc)][(int) aa2i(tc)];
//fprintf(stderr,"%3i %3i %3i %3i %3i %1c %1c %6.2f %6.2f %6.2f %6.2f \n",step,hit.nsteps,hit.i[step],hit.j[step],int(state),qc,tc,S[(int)aa2i(qc)][(int)aa2i(tc)],score_sim,hit.P_posterior[step],hit.sum_of_probs); //DEBUG (P_posterior not defined for Viterbi!)
}
}
AddGaps(); //fill up gaps until query and template parts have same length
qa->AddChar('\0');
ta->AddChar('\0');
// Change gap symbol '.' (gap aligned to insert) to '~' if one HMM has gap with respect to other HMM
for (hh = 1; hh < qa->pos; hh++) {
if (symbol[hh] == 'Q') {
// Gap in query (IM or GD state)
symbol[hh] = ' ';
for (k = 0; k < qa->n; k++)
if (qa->s[k][hh] == '.')
qa->s[k][hh] = '-';
}
else if (symbol[hh] == 'T') {
// Gap in template (MI or DG state)
symbol[hh] = ' ';
for (k = 0; k < ta->n; k++)
if (ta->s[k][hh] == '.')
ta->s[k][hh] = '-';
}
}
// record in FullAlignment if posteriors were calculated
//if (!hit.P_posterior) posterior[0]='\0'; else posterior[0]=' ';
if (!hit.P_posterior)
posterior[0] = '\0';
}
INT_PTR CALLBACK
ProcessPageWndProc(HWND hDlg, UINT message, WPARAM wParam, LPARAM lParam)
{
RECT rc;
int nXDifference;
int nYDifference;
int cx, cy;
switch (message) {
case WM_INITDIALOG:
/*
* Save the width and height
*/
GetClientRect(hDlg, &rc);
nProcessPageWidth = rc.right;
nProcessPageHeight = rc.bottom;
/* Update window position */
SetWindowPos(hDlg, NULL, 15, 30, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
/*
* Get handles to the controls
*/
hProcessPageListCtrl = GetDlgItem(hDlg, IDC_PROCESSLIST);
hProcessPageHeaderCtrl = ListView_GetHeader(hProcessPageListCtrl);
hProcessPageEndProcessButton = GetDlgItem(hDlg, IDC_ENDPROCESS);
hProcessPageShowAllProcessesButton = GetDlgItem(hDlg, IDC_SHOWALLPROCESSES);
/*
* Set the title, and extended window styles for the list control
*/
SetWindowTextW(hProcessPageListCtrl, L"Processes");
(void)ListView_SetExtendedListViewStyle(hProcessPageListCtrl, ListView_GetExtendedListViewStyle(hProcessPageListCtrl) | LVS_EX_FULLROWSELECT | LVS_EX_HEADERDRAGDROP);
AddColumns();
/*
* Subclass the process list control so we can intercept WM_ERASEBKGND
*/
OldProcessListWndProc = (WNDPROC)(LONG_PTR) SetWindowLongPtrW(hProcessPageListCtrl, GWLP_WNDPROC, (LONG_PTR)ProcessListWndProc);
#ifdef RUN_PROC_PAGE
/* Start our refresh thread */
hProcessThread = CreateThread(NULL, 0, ProcessPageRefreshThread, NULL, 0, &dwProcessThread);
#endif
return TRUE;
case WM_DESTROY:
/* Close the event handle, this will make the */
/* refresh thread exit when the wait fails */
#ifdef RUN_PROC_PAGE
EndLocalThread(&hProcessThread, dwProcessThread);
#endif
SaveColumnSettings();
break;
case WM_COMMAND:
/* Handle the button clicks */
switch (LOWORD(wParam))
{
case IDC_ENDPROCESS:
ProcessPage_OnEndProcess();
}
break;
case WM_SIZE:
if (wParam == SIZE_MINIMIZED)
return 0;
cx = LOWORD(lParam);
cy = HIWORD(lParam);
nXDifference = cx - nProcessPageWidth;
nYDifference = cy - nProcessPageHeight;
nProcessPageWidth = cx;
nProcessPageHeight = cy;
/* Reposition the application page's controls */
GetWindowRect(hProcessPageListCtrl, &rc);
cx = (rc.right - rc.left) + nXDifference;
cy = (rc.bottom - rc.top) + nYDifference;
SetWindowPos(hProcessPageListCtrl, NULL, 0, 0, cx, cy, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOMOVE|SWP_NOZORDER);
InvalidateRect(hProcessPageListCtrl, NULL, TRUE);
GetClientRect(hProcessPageEndProcessButton, &rc);
MapWindowPoints(hProcessPageEndProcessButton, hDlg, (LPPOINT)(PRECT)(&rc), sizeof(RECT)/sizeof(POINT));
cx = rc.left + nXDifference;
cy = rc.top + nYDifference;
SetWindowPos(hProcessPageEndProcessButton, NULL, cx, cy, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
InvalidateRect(hProcessPageEndProcessButton, NULL, TRUE);
GetClientRect(hProcessPageShowAllProcessesButton, &rc);
MapWindowPoints(hProcessPageShowAllProcessesButton, hDlg, (LPPOINT)(PRECT)(&rc), sizeof(RECT)/sizeof(POINT));
cx = rc.left;
cy = rc.top + nYDifference;
SetWindowPos(hProcessPageShowAllProcessesButton, NULL, cx, cy, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
InvalidateRect(hProcessPageShowAllProcessesButton, NULL, TRUE);
break;
case WM_NOTIFY:
ProcessPageOnNotify(wParam, lParam);
break;
case WM_KEYDOWN:
if (wParam == VK_DELETE)
ProcessPage_OnEndProcess();
break;
}
return 0;
}
void ecPropertyListCtrl::Fill(ecConfigItem *pti)
{
if(NULL==pti){
ClearAll();
AddColumns();
m_nFirstProperty=0;
m_pti=NULL;
} else /* if(pti!=m_pti) */ {
m_pti=pti;
m_nMaxValueWidth=0;
ecOptionType type=m_pti->GetOptionType();
int i;
// Initially flag all items as unnecessary - calls of SetItem or SetProperty will change this
for(i=GetItemCount()-1;i>=0;--i){
SetItemData(i,0);
}
if (m_pti->HasBool () || (ecOptionTypeNone!=type)){
SetItem(ecMacro, m_pti->GetMacro ());
}
if (m_pti->HasBool ()){
SetItem(ecEnabled, m_pti->IsEnabled() ? wxT("True") : wxT("False"));
}
if(!m_pti->GetFilename().IsEmpty()){
SetItem(ecFile, m_pti->GetFilename());
}
SetItem(ecURL, m_pti->GetURL());
if (ecOptionTypeNone!=type){
switch(type){
case ecString:
SetItem(ecValue, m_pti->StringValue());
SetItem(ecDefaultValue, m_pti->StringDefaultValue());
break;
case ecLong:
SetItem(ecValue, ecUtils::IntToStr(m_pti->Value(), wxGetApp().GetSettings().m_bHex));
SetItem(ecDefaultValue, ecUtils::IntToStr(m_pti->DefaultValue(), wxGetApp().GetSettings().m_bHex));
break;
case ecDouble:
SetItem(ecValue, ecUtils::DoubleToStr(m_pti->DoubleValue()));
SetItem(ecDefaultValue, ecUtils::DoubleToStr(m_pti->DoubleDefaultValue()));
break;
case ecEnumerated:
SetItem(ecValue,m_pti->StringValue());
SetItem(ecDefaultValue,m_pti->StringDefaultValue());
break;
default:
wxASSERT( FALSE );
break;
}
// TODO: set image
// SetItem(ecType, ecConfigItem::TreeItemTypeImage[type]);
}
// List all the properties applicable to me
const std::string name = ecUtils::UnicodeToStdStr (m_pti->GetMacro ());
if (name.size () > 0)
{
const CdlConfiguration config = wxGetApp().GetConfigToolDoc ()->GetCdlConfig ();
const CdlNode node = config->find_node (name, true);
wxASSERT (node);
const std::vector<CdlProperty> & properties = node->get_properties ();
std::vector<CdlProperty>::const_iterator property_i;
// CMapStringToPtr map; // count of each property name
wxHashTable map(wxKEY_STRING); // count of each property name
for (property_i = properties.begin (); property_i != properties.end (); property_i++) {// for each property
// get the property name
const CdlProperty &prop=*property_i;
const wxString strName(prop->get_property_name ().c_str());
enum {VISIBLE_PROPERTIES_COUNT=sizeof visible_properties/sizeof visible_properties[0]};
if (std::find (visible_properties, visible_properties + VISIBLE_PROPERTIES_COUNT, ecUtils::UnicodeToStdStr(strName)) != visible_properties + VISIBLE_PROPERTIES_COUNT) {// if the property should be displayed
// set the property arguments
wxString strPropertyArgs;
const std::vector<std::string> & argv = prop->get_argv ();
void *p;
p = (void*) map.Delete(strName);
p=(void *)((int)p+1);
map.Put(strName, (wxObject*) p);
std::vector<std::string>::const_iterator argv_i;
for (argv_i = argv.begin (); argv_i != argv.end (); argv_i++){ // for each property argument...
if (argv_i != argv.begin ()){ // ...except the first (the property name)
wxString strArg(ecUtils::StripExtraWhitespace (wxString(argv_i->c_str())));
if (strPropertyArgs.Len() + strArg.Len() + 1 > 256) {// if the string is too long for the list control
break; // no need to add any further arguments
}
strPropertyArgs += strArg; // add the argument to the string
strPropertyArgs += wxT (" "); // separate arguments by a space character
}
}
// the list control appears to display a maximum of 256 characters
int nIndex=SetItem(strName, strPropertyArgs, GetItemCount(), (int)p);
SetItemData(nIndex, (long) prop);
// display the exclamation icon if the property is in a conflicts list
bool bConflictItem =
// PropertyInConflictsList (* property_i, config->get_structural_conflicts ()) || ignore for now
PropertyInConflictsList (prop, config->get_all_conflicts ());
// TODO: set the image for a conflict item
// CListCtrl::SetItem (nIndex, 0, LVIF_IMAGE, NULL, bConflictItem ? 1 : 0, 0, 0, 0 );
}
}
}
for(i=GetItemCount()-1;i>=0;--i){
if(0==GetItemData(i)){
DeleteItem(i);
if(i<m_nFirstProperty){
m_nFirstProperty--;
}
}
}
// TODO
#if 0
CRect rect;
GetClientRect(rect);
int nAvailWidth=rect.Width()-GetColumnWidth(0);
int w=max(m_nMaxValueWidth,nAvailWidth);
m_f[1]=double(w)/double(rect.Width());
SetColumnWidth(1,w);
#endif
}
Refresh();
}
INT_PTR CALLBACK
ProcessPageWndProc(HWND hDlg, UINT message, WPARAM wParam, LPARAM lParam)
{
RECT rc;
int nXDifference;
int nYDifference;
int cx, cy;
switch (message) {
case WM_INITDIALOG:
/*
* Save the width and height
*/
GetClientRect(hDlg, &rc);
nProcessPageWidth = rc.right;
nProcessPageHeight = rc.bottom;
/* Update window position */
SetWindowPos(hDlg, NULL, 15, 30, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
/*
* Get handles to the controls
*/
hProcessPageListCtrl = GetDlgItem(hDlg, IDC_PROCESSLIST);
hProcessPageHeaderCtrl = (HWND)SendMessageW(hProcessPageListCtrl, LVM_GETHEADER, 0, 0);
hProcessPageEndProcessButton = GetDlgItem(hDlg, IDC_ENDPROCESS);
hProcessPageShowAllProcessesButton = GetDlgItem(hDlg, IDC_SHOWALLPROCESSES);
/* Enable manual column reordering, set full select */
SendMessageW(hProcessPageListCtrl, LVM_SETEXTENDEDLISTVIEWSTYLE, LVS_EX_FULLROWSELECT|LVS_EX_HEADERDRAGDROP,
LVS_EX_FULLROWSELECT|LVS_EX_HEADERDRAGDROP);
AddColumns();
/*
* Subclass the process list control so we can intercept WM_ERASEBKGND
*/
OldProcessListWndProc = (WNDPROC)SetWindowLongPtrW(hProcessPageListCtrl, GWLP_WNDPROC, (LONG_PTR)ProcessListWndProc);
/* Start our refresh thread */
CloseHandle( CreateThread(NULL, 0, ProcessPageRefreshThread, NULL, 0, NULL));
return TRUE;
case WM_DESTROY:
/* Close the event handle, this will make the */
/* refresh thread exit when the wait fails */
CloseHandle(hProcessPageEvent);
SaveColumnSettings();
break;
case WM_COMMAND:
/* Handle the button clicks */
switch (LOWORD(wParam))
{
case IDC_ENDPROCESS:
ProcessPage_OnEndProcess();
}
break;
case WM_SIZE:
if (wParam == SIZE_MINIMIZED)
return 0;
cx = LOWORD(lParam);
cy = HIWORD(lParam);
nXDifference = cx - nProcessPageWidth;
nYDifference = cy - nProcessPageHeight;
nProcessPageWidth = cx;
nProcessPageHeight = cy;
/* Reposition the application page's controls */
GetWindowRect(hProcessPageListCtrl, &rc);
cx = (rc.right - rc.left) + nXDifference;
cy = (rc.bottom - rc.top) + nYDifference;
SetWindowPos(hProcessPageListCtrl, NULL, 0, 0, cx, cy, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOMOVE|SWP_NOZORDER);
InvalidateRect(hProcessPageListCtrl, NULL, TRUE);
GetClientRect(hProcessPageEndProcessButton, &rc);
MapWindowPoints(hProcessPageEndProcessButton, hDlg, (LPPOINT)(&rc), (sizeof(RECT)/sizeof(POINT)) );
cx = rc.left + nXDifference;
cy = rc.top + nYDifference;
SetWindowPos(hProcessPageEndProcessButton, NULL, cx, cy, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
InvalidateRect(hProcessPageEndProcessButton, NULL, TRUE);
GetClientRect(hProcessPageShowAllProcessesButton, &rc);
MapWindowPoints(hProcessPageShowAllProcessesButton, hDlg, (LPPOINT)(&rc), (sizeof(RECT)/sizeof(POINT)) );
cx = rc.left;
cy = rc.top + nYDifference;
SetWindowPos(hProcessPageShowAllProcessesButton, NULL, cx, cy, 0, 0, SWP_NOACTIVATE|SWP_NOOWNERZORDER|SWP_NOSIZE|SWP_NOZORDER);
InvalidateRect(hProcessPageShowAllProcessesButton, NULL, TRUE);
break;
case WM_NOTIFY:
ProcessPageOnNotify(lParam);
break;
}
return 0;
}
/*!
* \brief Fill property list.
*
* Retrieves the properties of the currently selected item and updates
* the list in the property window.
*
* \param pti Pointer to the currently selected item.
*/
void CPropertyList::Fill(CConfigItem * pti)
{
/*
* Clear the list.
*/
ClearAll();
AddColumns();
m_pti = pti;
/*
* Display this item's properties.
*/
if (m_pti) {
int i;
/*
* Remove previously set item data.
*/
for (i = GetItemCount() - 1; i >= 0; --i) {
SetItemData(i, 0);
}
/*
* Set the file name property. Typically a relative path to a
* source code header file.
*/
wxString value = m_pti->GetFilename();
if (!value.IsEmpty()) {
SetItem(nutFile, value);
}
/*
* Set the macro property.
*/
value = m_pti->GetMacro();
if (!value.IsEmpty()) {
SetItem(nutMacro, value);
/*
* The macro's value is optional.
*/
switch (m_pti->GetOptionType()) {
case nutOptionTypeNone:
break;
case nutEnumerated:
case nutString:
if(!m_pti->StringValue().IsEmpty()) {
SetItem(nutValue, m_pti->StringValue());
}
break;
case nutInteger:
break;
default:
wxASSERT(false);
break;
}
/*
* Boolean options must be active to be included.
*/
if (m_pti->HasBool()) {
SetItem(nutActive, m_pti->IsActive()? wxT("True") : wxT("False"));
}
}
/*
* An item may be disabled, if it requires a property which
* is not provided by any active component.
*/
SetItem(nutEnabled, m_pti->IsEnabled()? wxT("Yes") : wxT("No"));
/*
* Remove all items from the property list without previously
* set data.
*/
for (i = GetItemCount() - 1; i >= 0; --i) {
if (GetItemData(i) == 0) {
DeleteItem(i);
}
}
value = m_pti->GetRequirementList();
if (!value.IsEmpty()) {
SetItem(nutRequires, value);
}
value = m_pti->GetProvisionList();
if (!value.IsEmpty()) {
SetItem(nutProvides, value);
}
value = m_pti->GetExclusivityList();
if (!value.IsEmpty()) {
SetItem(nutExclusivity, value);
}
}
Refresh();
}
