C++ (Cpp) CollectCoverageBed примеры использования

Пример #1

Файл: coverageBed.cpp Проект: cjfields/bedtools

// build
BedCoverage::BedCoverage(string &bedAFile, string &bedBFile, bool forceStrand,
                         bool writeHistogram, bool bamInput, bool obeySplits, bool eachBase) {

    _bedAFile       = bedAFile;
    _bedBFile       = bedBFile;

    _bedA           = new BedFile(bedAFile);
    _bedB           = new BedFile(bedBFile);

    _forceStrand    = forceStrand;
    _obeySplits     = obeySplits;
    _eachBase       = eachBase;
    _writeHistogram = writeHistogram;
    _bamInput       = bamInput;


    if (_bamInput == false)
        CollectCoverageBed();
    else
        CollectCoverageBam(_bedA->bedFile);
}

Пример #2

Файл: coverageBed.cpp Проект: bjventers/bedtools

// build
BedCoverage::BedCoverage(string &bedAFile, string &bedBFile, bool sameStrand, bool diffStrand,
                         bool writeHistogram, bool bamInput, bool obeySplits, 
                         bool eachBase, bool countsOnly) {

    _bedAFile       = bedAFile;
    _bedBFile       = bedBFile;

    _bedA           = new BedFile(bedAFile);
    _bedB           = new BedFile(bedBFile);

    _sameStrand     = sameStrand;
    _diffStrand     = diffStrand;
    _obeySplits     = obeySplits;
    _eachBase       = eachBase;
    _writeHistogram = writeHistogram;
    _bamInput       = bamInput;
    _countsOnly     = countsOnly;


    if (_bamInput == false)
        CollectCoverageBed();
    else
        CollectCoverageBam(_bedA->bedFile);
}