void
NonLinearStatic :: assembleIncrementalReferenceLoadVectors(FloatArray &_incrementalLoadVector,
FloatArray &_incrementalLoadVectorOfPrescribed,
SparseNonLinearSystemNM :: referenceLoadInputModeType _refMode,
Domain *sourceDomain, TimeStep *tStep)
{
_incrementalLoadVector.resize( sourceDomain->giveEngngModel()->giveNumberOfDomainEquations( sourceDomain->giveNumber(), EModelDefaultEquationNumbering() ) );
_incrementalLoadVector.zero();
_incrementalLoadVectorOfPrescribed.resize( sourceDomain->giveEngngModel()->giveNumberOfDomainEquations( sourceDomain->giveNumber(), EModelDefaultPrescribedEquationNumbering() ) );
_incrementalLoadVectorOfPrescribed.zero();
if ( _refMode == SparseNonLinearSystemNM :: rlm_incremental ) {
///@todo This was almost definitely wrong before. It never seems to be used. Is this code even relevant?
this->assembleVector(_incrementalLoadVector, tStep, ExternalForceAssembler(),
VM_Incremental, EModelDefaultEquationNumbering(), sourceDomain);
this->assembleVector(_incrementalLoadVectorOfPrescribed, tStep, ExternalForceAssembler(),
VM_Incremental, EModelDefaultPrescribedEquationNumbering(), sourceDomain);
} else {
this->assembleVector(_incrementalLoadVector, tStep, ExternalForceAssembler(),
VM_Total, EModelDefaultEquationNumbering(), sourceDomain);
this->assembleVector(_incrementalLoadVectorOfPrescribed, tStep, ExternalForceAssembler(),
VM_Total, EModelDefaultPrescribedEquationNumbering(), sourceDomain);
}
this->updateSharedDofManagers(_incrementalLoadVector, EModelDefaultEquationNumbering(), LoadExchangeTag);
}
void
SUPG :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
// update element stabilization
for ( auto &elem : d->giveElements() ) {
static_cast< FMElement * >( elem.get() )->updateStabilizationCoeffs(tStep);
}
if ( cmpn == InternalRhs ) {
this->internalForces.zero();
this->assembleVector(this->internalForces, tStep, SUPGInternalForceAssembler(lscale, dscale, uscale), VM_Total,
EModelDefaultEquationNumbering(), d, & this->eNorm);
this->updateSharedDofManagers(this->internalForces, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
return;
} else if ( cmpn == NonLinearLhs ) {
this->lhs->zero();
//if ( 1 ) { //if ((nite > 5)) // && (rnorm < 1.e4))
this->assemble( *lhs, tStep, SUPGTangentAssembler(TangentStiffness, lscale, dscale, uscale, alpha),
EModelDefaultEquationNumbering(), d );
// } else {
// this->assemble( lhs, tStep, SUPGTangentAssembler(SecantStiffness),
// EModelDefaultEquationNumbering(), d );
// }
return;
} else {
OOFEM_ERROR("Unknown component");
}
}
void DarcyFlow :: DumpMatricesToFile(FloatMatrix *LHS, FloatArray *RHS, FloatArray *SolutionVector)
{
FILE *rhsFile = fopen("RHS.txt", "w");
// rhs.printYourself();
for ( int i = 1; i <= RHS->giveSize(); i++ ) {
fprintf( rhsFile, "%0.15e\n", RHS->at(i) );
}
fclose(rhsFile);
FILE *lhsFile = fopen("LHS.txt", "w");
for ( int i = 1; i <= this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ); i++ ) {
for ( int j = 1; j <= this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ); j++ ) {
fprintf( lhsFile, "%0.15e\t", LHS->at(i, j) );
}
fprintf(lhsFile, "\n");
}
fclose(lhsFile);
if ( SolutionVector == NULL ) {
return;
}
FILE *SolutionFile = fopen("SolutionVector.txt", "w");
for ( int i = 1; i <= SolutionVector->giveSize(); i++ ) {
fprintf( SolutionFile, "%0.15e\n", SolutionVector->at(i) );
}
fclose(SolutionFile);
}
void
TransientTransportProblem :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
// F(T) + C*dT/dt = Q
// Linearized:
// F(T^(k)) + K*a*dT_1 = Q - C * dT/dt^(k) - C/dt * dT_1
// Rearranged
// (a*K + C/dt) * dT_1 = Q - (F(T^(k)) + C * dT/dt^(k))
// K_eff * dT_1 = Q - F_eff
// Update:
// T_1 += dT_1
///@todo NRSolver should report when the solution changes instead of doing it this way.
this->field->update(VM_Total, tStep, solution, EModelDefaultEquationNumbering());
///@todo Need to reset the boundary conditions properly since some "update" is doing strange
/// things such as applying the (wrong) boundary conditions. This call will be removed when that code can be removed.
this->field->applyBoundaryCondition(tStep);
if ( cmpn == InternalRhs ) {
// F_eff = F(T^(k)) + C * dT/dt^(k)
this->internalForces.zero();
this->assembleVector(this->internalForces, tStep, InternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1), & this->eNorm);
this->updateSharedDofManagers(this->internalForces, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
if ( lumped ) {
// Note, inertia contribution cannot be computed on element level when lumped mass matrices are used.
FloatArray oldSolution, vel;
this->field->initialize(VM_Total, tStep->givePreviousStep(), oldSolution, EModelDefaultEquationNumbering());
vel.beDifferenceOf(solution, oldSolution);
vel.times( 1./tStep->giveTimeIncrement() );
for ( int i = 0; i < vel.giveSize(); ++i ) {
this->internalForces[i] += this->capacityDiag[i] * vel[i];
}
} else {
FloatArray tmp;
this->assembleVector(this->internalForces, tStep, InertiaForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1), & tmp);
this->eNorm.add(tmp); ///@todo Fix this, assembleVector shouldn't zero eNorm inside the functions. / Mikael
}
} else if ( cmpn == NonLinearLhs ) {
// K_eff = (a*K + C/dt)
if ( !this->keepTangent ) {
this->effectiveMatrix->zero();
this->assemble( *effectiveMatrix, tStep, TangentAssembler(TangentStiffness),
EModelDefaultEquationNumbering(), this->giveDomain(1) );
effectiveMatrix->times(alpha);
if ( lumped ) {
effectiveMatrix->addDiagonal(1./tStep->giveTimeIncrement(), capacityDiag);
} else {
effectiveMatrix->add(1./tStep->giveTimeIncrement(), *capacityMatrix);
}
}
} else {
OOFEM_ERROR("Unknown component");
}
}
void
NonLinearStatic :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
//
// updates some component, which is used by numerical method
// to newly reached state. used mainly by numerical method
// when new tangent stiffness is needed during finding
// of new equilibrium stage.
//
{
switch ( cmpn ) {
case NonLinearLhs:
if ( stiffMode == nls_tangentStiffness ) {
stiffnessMatrix->zero(); // zero stiffness matrix
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Assembling tangent stiffness matrix\n");
#endif
this->assemble(*stiffnessMatrix, tStep, TangentAssembler(TangentStiffness),
EModelDefaultEquationNumbering(), d);
} else if ( ( stiffMode == nls_secantStiffness ) || ( stiffMode == nls_secantInitialStiffness && initFlag ) ) {
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Assembling secant stiffness matrix\n");
#endif
stiffnessMatrix->zero(); // zero stiffness matrix
this->assemble(*stiffnessMatrix, tStep, TangentAssembler(SecantStiffness),
EModelDefaultEquationNumbering(), d);
initFlag = 0;
} else if ( ( stiffMode == nls_elasticStiffness ) && ( initFlag ||
( this->giveMetaStep( tStep->giveMetaStepNumber() )->giveFirstStepNumber() == tStep->giveNumber() ) ) ) {
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Assembling elastic stiffness matrix\n");
#endif
stiffnessMatrix->zero(); // zero stiffness matrix
this->assemble(*stiffnessMatrix, tStep, TangentAssembler(ElasticStiffness),
EModelDefaultEquationNumbering(), d);
initFlag = 0;
} else {
// currently no action , this method is mainly intended to
// assemble new tangent stiffness after each iteration
// when secantStiffMode is on, we use the same stiffness
// during iteration process
}
break;
case InternalRhs:
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Updating internal forces\n");
#endif
// update internalForces and internalForcesEBENorm concurrently
this->giveInternalForces(internalForces, true, d->giveNumber(), tStep);
break;
default:
OOFEM_ERROR("Unknown Type of component.");
}
}
void EigenValueDynamic :: solveYourselfAt(TimeStep *tStep)
{
//
// creates system of governing eq's and solves them at given time step
//
// first assemble problem at current time step
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling stiffness and mass matrices\n");
#endif
if ( tStep->giveNumber() == 1 ) {
//
// first step assemble stiffness Matrix
//
stiffnessMatrix = classFactory.createSparseMtrx(sparseMtrxType);
stiffnessMatrix->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
massMatrix = classFactory.createSparseMtrx(sparseMtrxType);
massMatrix->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
this->assemble( stiffnessMatrix, tStep, StiffnessMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
this->assemble( massMatrix, tStep, MassMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
//
// create resulting objects eigVec and eigVal
//
eigVec.resize(this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ), numberOfRequiredEigenValues);
eigVec.zero();
eigVal.resize(numberOfRequiredEigenValues);
eigVal.zero();
}
//
// set-up numerical model
//
this->giveNumericalMethod( this->giveMetaStep( tStep->giveMetaStepNumber() ) );
//
// call numerical model to solve arised problem
//
#ifdef VERBOSE
OOFEM_LOG_INFO("Solving ...\n");
#endif
nMethod->solve(stiffnessMatrix, massMatrix, & eigVal, & eigVec, rtolv, numberOfRequiredEigenValues);
delete stiffnessMatrix;
delete massMatrix;
stiffnessMatrix = massMatrix = NULL;
}
void
NonLinearStatic :: unpackMigratingData(TimeStep *tStep)
{
Domain *domain = this->giveDomain(1);
int ndofman = domain->giveNumberOfDofManagers();
//int myrank = this->giveRank();
// resize target arrays
int neq = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
totalDisplacement.resize(neq);
incrementOfDisplacement.resize(neq);
incrementalLoadVector.resize(neq);
initialLoadVector.resize(neq);
initialLoadVectorOfPrescribed.resize( giveNumberOfDomainEquations( 1, EModelDefaultPrescribedEquationNumbering() ) );
incrementalLoadVectorOfPrescribed.resize( giveNumberOfDomainEquations( 1, EModelDefaultPrescribedEquationNumbering() ) );
for ( int idofman = 1; idofman <= ndofman; idofman++ ) {
DofManager *_dm = domain->giveDofManager(idofman);
for ( Dof *_dof: *_dm ) {
if ( _dof->isPrimaryDof() ) {
int _eq;
if ( ( _eq = _dof->__giveEquationNumber() ) ) {
// pack values in solution vectors
totalDisplacement.at(_eq) = _dof->giveUnknownsDictionaryValue( tStep, VM_Total );
initialLoadVector.at(_eq) = _dof->giveUnknownsDictionaryValue( tStep, VM_RhsInitial );
incrementalLoadVector.at(_eq) = _dof->giveUnknownsDictionaryValue( tStep, VM_RhsIncremental );
#if 0
// debug print
if ( _dm->giveParallelMode() == DofManager_shared ) {
fprintf(stderr, "[%d] Shared: %d(%d) -> %d\n", myrank, idofman, idof, _eq);
} else {
fprintf(stderr, "[%d] Local : %d(%d) -> %d\n", myrank, idofman, idof, _eq);
}
#endif
} else if ( ( _eq = _dof->__givePrescribedEquationNumber() ) ) {
// pack values in prescribed solution vectors
initialLoadVectorOfPrescribed.at(_eq) = _dof->giveUnknownsDictionaryValue( tStep, VM_RhsInitial );
incrementalLoadVectorOfPrescribed.at(_eq) = _dof->giveUnknownsDictionaryValue( tStep, VM_RhsIncremental );
#if 0
// debug print
fprintf(stderr, "[%d] %d(%d) -> %d\n", myrank, idofman, idof, -_eq);
#endif
}
} // end primary dof
} // end dof loop
} // end dofman loop
this->initializeCommMaps(true);
nMethod->reinitialize();
// reinitialize error estimator (if any)
if ( this->giveDomainErrorEstimator(1) ) {
this->giveDomainErrorEstimator(1)->reinitialize();
}
initFlag = true;
}
int
EIPrimaryUnknownMapper :: mapAndUpdate(FloatArray &answer, ValueModeType mode,
Domain *oldd, Domain *newd, TimeStep *tStep)
{
int inode, nd_nnodes = newd->giveNumberOfDofManagers();
int nsize = newd->giveEngngModel()->giveNumberOfDomainEquations( newd->giveNumber(), EModelDefaultEquationNumbering() );
FloatArray unknownValues;
IntArray dofidMask, locationArray;
IntArray reglist;
#ifdef OOFEM_MAPPING_CHECK_REGIONS
ConnectivityTable *conTable = newd->giveConnectivityTable();
const IntArray *nodeConnectivity;
#endif
answer.resize(nsize);
answer.zero();
for ( inode = 1; inode <= nd_nnodes; inode++ ) {
DofManager *node = newd->giveNode(inode);
/* HUHU CHEATING */
#ifdef __PARALLEL_MODE
if ( ( node->giveParallelMode() == DofManager_null ) ||
( node->giveParallelMode() == DofManager_remote ) ) {
continue;
}
#endif
#ifdef OOFEM_MAPPING_CHECK_REGIONS
// build up region list for node
nodeConnectivity = conTable->giveDofManConnectivityArray(inode);
reglist.resize( nodeConnectivity->giveSize() );
reglist.clear();
for ( int indx = 1; indx <= nodeConnectivity->giveSize(); indx++ ) {
reglist.insertSortedOnce( newd->giveElement( nodeConnectivity->at(indx) )->giveRegionNumber() );
}
#endif
///@todo Shouldn't we pass a primary field or something to this function?
if ( this->evaluateAt(unknownValues, dofidMask, mode, oldd, * node->giveCoordinates(), reglist, tStep) ) {
///@todo This doesn't respect local coordinate systems in nodes. Supporting that would require major reworking.
for ( int ii = 1; ii <= dofidMask.giveSize(); ii++ ) {
// exclude slaves; they are determined from masters
auto it = node->findDofWithDofId((DofIDItem)dofidMask.at(ii));
if ( it != node->end() ) {
Dof *dof = *it;
if ( dof->isPrimaryDof() ) {
int eq = dof->giveEquationNumber(EModelDefaultEquationNumbering());
answer.at( eq ) += unknownValues.at(ii);
}
}
}
} else {
OOFEM_ERROR("evaluateAt service failed for node %d", inode);
}
}
return 1;
}
void
NlDEIDynamic :: computeLoadVector(FloatArray &answer, ValueModeType mode, TimeStep *tStep)
{
answer.resize( this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ) );
answer.zero();
//
// Assemble the nodal part of load vector.
//
this->assembleVector( answer, tStep, ExternalForceAssembler(), mode,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
//
// Exchange contributions.
//
this->updateSharedDofManagers(answer, EModelDefaultEquationNumbering(), LoadExchangeTag);
}
void
ParallelContext :: init(int newDi)
{
di = newDi;
///@todo Should we even do this here? The user of the requested ParallelContext will just set this manually instead.
#ifdef __PARALLEL_MODE
if ( emodel->isParallel() ) {
///@todo This shouldn't be hardcoded to just the default numbering schemes. In fact, this shouldn't even have "prescribed" and "free", just use the given numbering.
n2g.init( emodel, di, EModelDefaultEquationNumbering() );
n2l.init( emodel, di, EModelDefaultEquationNumbering() );
#ifdef __VERBOSE_PARALLEL
fprintf( stderr, "[%d] ParallelContext :: init - leq:%d, neq:%d, geq:%d\n", emodel->giveRank(), giveNumberOfLocalEqs(), giveNumberOfNaturalEqs(), giveNumberOfGlobalEqs() );
#endif
}
#endif
}
void
StokesFlowVelocityHomogenization :: computeTangent(FloatMatrix &answer, TimeStep *tStep)
{
IntArray loc, col;
Domain *domain = this->giveDomain(1);
int nsd = domain->giveNumberOfSpatialDimensions();
int ndof = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
// Build F matrix
IntArray dofs(nsd);
for ( int i = 0; i < nsd; ++i ) {
dofs[i] = V_u + i; ///@todo This is a hack. We should have these as user input instead.
}
FloatMatrix F(ndof, nsd), Fe, N;
col.enumerate(nsd);
for ( auto &elem : domain->giveElements() ) {
this->integrateNMatrix(N, *elem, tStep);
elem->giveLocationArray( loc, dofs, EModelDefaultEquationNumbering() );
Fe.beTranspositionOf(N);
F.assemble(Fe, loc, col);
}
FloatMatrix H;
std :: unique_ptr< SparseLinearSystemNM > solver( classFactory.createSparseLinSolver(solverType, this->giveDomain(1), this) );
H.resize( F.giveNumberOfRows(), F.giveNumberOfColumns() );
H.zero();
// For correct homogenization, the tangent at the converged values should be used
// (the one from the Newton iterations from solveYourselfAt is not updated to contain the latest values).
SparseMtrxType stype = solver->giveRecommendedMatrix(true);
std :: unique_ptr< SparseMtrx > Kff( classFactory.createSparseMtrx( stype ) );
Kff->buildInternalStructure(this, domain->giveNumber(), EModelDefaultEquationNumbering() );
this->assemble(*Kff, tStep, TangentStiffnessMatrix, EModelDefaultEquationNumbering(), domain);
solver->solve(*Kff, F, H);
answer.beTProductOf(H, F);
answer.times( 1. / this->giveAreaOfRVE() );
}
void
StructuralEngngModel :: giveInternalForces(FloatArray &answer, bool normFlag, int di, TimeStep *tStep)
{
// Simply assembles contributions from each element in domain
Domain *domain = this->giveDomain(di);
// Update solution state counter
tStep->incrementStateCounter();
answer.resize( this->giveNumberOfDomainEquations( di, EModelDefaultEquationNumbering() ) );
answer.zero();
this->assembleVector(answer, tStep, InternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), domain, normFlag ? & this->internalForcesEBENorm : NULL);
// Redistributes answer so that every process have the full values on all shared equations
this->updateSharedDofManagers(answer, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
// Remember last internal vars update time stamp.
internalVarUpdateStamp = tStep->giveSolutionStateCounter();
}
void StaticStructural :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
if ( cmpn == InternalRhs ) {
// Updates the solution in case it has changed
///@todo NRSolver should report when the solution changes instead of doing it this way.
this->field->update(VM_Total, tStep, this->solution, EModelDefaultEquationNumbering());
this->field->applyBoundaryCondition(tStep);///@todo Temporary hack to override the incorrect vavues that is set by "update" above. Remove this when that is fixed.
this->internalForces.zero();
this->assembleVector(this->internalForces, tStep, InternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), d, & this->eNorm);
this->updateSharedDofManagers(this->internalForces, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
internalVarUpdateStamp = tStep->giveSolutionStateCounter(); // Hack for linearstatic
} else if ( cmpn == NonLinearLhs ) {
this->stiffnessMatrix->zero();
this->assemble(*this->stiffnessMatrix, tStep, TangentAssembler(TangentStiffness), EModelDefaultEquationNumbering(), d);
} else {
OOFEM_ERROR("Unknown component");
}
}
void DarcyFlow :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
switch ( cmpn ) {
case InternalRhs:
this->internalForces.zero();
this->assembleVector(this->internalForces, tStep, InternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), d, & this->ebeNorm);
this->updateSharedDofManagers(this->externalForces, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
break;
case NonLinearLhs:
this->stiffnessMatrix->zero();
this->assemble( *this->stiffnessMatrix, tStep, TangentStiffnessMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
break;
default:
OOFEM_ERROR("Unknown component id (%d)", ( int ) cmpn);
}
}
int
ParallelContext :: giveNumberOfGlobalEqs()
{
#ifdef __PARALLEL_MODE
if ( emodel->isParallel() ) {
return n2g.giveNumberOfGlobalEqs();
} else {
#endif
return emodel->giveNumberOfDomainEquations( di, EModelDefaultEquationNumbering() );
#ifdef __PARALLEL_MODE
}
#endif
}
void
StationaryTransportProblem :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
if ( cmpn == InternalRhs ) {
this->internalForces.zero();
this->assembleVector( this->internalForces, tStep, EID_ConservationEquation, InternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1), & this->eNorm );
return;
} else if ( cmpn == NonLinearLhs ) {
if ( !this->keepTangent ) {
// Optimization for linear problems, we can keep the old matrix (which could save its factorization)
this->conductivityMatrix->zero();
///@todo We should use some problem-neutral names instead of "ConductivityMatrix" (and something nicer for LHSBCMatrix)
this->assemble( conductivityMatrix, tStep, EID_ConservationEquation, ConductivityMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
this->assemble( conductivityMatrix, tStep, EID_ConservationEquation, LHSBCMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
}
return;
} else {
OOFEM_ERROR("StationaryTransportProblem::updateComponent - Unknown component");
}
}
void FreeWarping :: solveYourself()
{
if ( this->isParallel() ) {
#ifdef __VERBOSE_PARALLEL
// force equation numbering before setting up comm maps
int neq = this->giveNumberOfDomainEquations(1, EModelDefaultEquationNumbering());
OOFEM_LOG_INFO("[process rank %d] neq is %d\n", this->giveRank(), neq);
#endif
this->initializeCommMaps();
}
StructuralEngngModel :: solveYourself();
}
void StokesFlow :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
velocityPressureField->update(VM_Total, tStep, solutionVector, EModelDefaultEquationNumbering());
// update element stabilization
for ( auto &elem : d->giveElements() ) {
static_cast< FMElement * >( elem.get() )->updateStabilizationCoeffs(tStep);
}
if ( cmpn == InternalRhs ) {
this->internalForces.zero();
this->assembleVector(this->internalForces, tStep, InternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), d, & this->eNorm);
this->updateSharedDofManagers(this->internalForces, EModelDefaultEquationNumbering(), InternalForcesExchangeTag);
return;
} else if ( cmpn == NonLinearLhs ) {
this->stiffnessMatrix->zero();
this->assemble(*stiffnessMatrix, tStep, TangentAssembler(TangentStiffness),
EModelDefaultEquationNumbering(), d);
return;
} else {
OOFEM_ERROR("Unknown component");
}
}
void StokesFlow :: updateComponent(TimeStep *tStep, NumericalCmpn cmpn, Domain *d)
{
// update element stabilization
int nelem = d->giveNumberOfElements();
for ( int i = 1; i <= nelem; ++i ) {
static_cast< FMElement* >( d->giveElement(i) )->updateStabilizationCoeffs(tStep);
}
if ( cmpn == InternalRhs ) {
this->internalForces.zero();
this->assembleVector( this->internalForces, tStep, EID_MomentumBalance_ConservationEquation, InternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1), &this->eNorm );
return;
} else if ( cmpn == NonLinearLhs ) {
this->stiffnessMatrix->zero();
this->assemble(this->stiffnessMatrix, tStep, EID_MomentumBalance_ConservationEquation, StiffnessMatrix,
EModelDefaultEquationNumbering(), d);
return;
} else {
OOFEM_ERROR("StokesFlow::updateComponent - Unknown component");
}
}
void NonLinearStatic :: solveYourself()
{
if ( this->isParallel() ) {
#ifdef __VERBOSE_PARALLEL
// force equation numbering before setting up comm maps
int neq = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
OOFEM_LOG_INFO("[process rank %d] neq is %d\n", this->giveRank(), neq);
#endif
// set up communication patterns
this->initializeCommMaps();
// init remote dofman list
// this->initRemoteDofManList ();
}
StructuralEngngModel :: solveYourself();
}
void
NlDEIDynamic :: computeLoadVector(FloatArray &answer, ValueModeType mode, TimeStep *stepN)
{
answer.resize( this->giveNumberOfEquations(EID_MomentumBalance) );
answer.zero();
//
// Assemble the nodal part of load vector.
//
this->assembleVector( answer, stepN, EID_MomentumBalance, ExternalForcesVector, mode,
EModelDefaultEquationNumbering(), this->giveDomain(1));
//
// Exchange contributions.
//
#ifdef __PARALLEL_MODE
this->updateSharedDofManagers( answer, LoadExchangeTag );
#endif
}
int
TrabBoneNL3D :: giveLocalNonlocalStiffnessContribution(GaussPoint *gp, IntArray &loc, const UnknownNumberingScheme &s,
FloatArray &lcontrib, TimeStep *tStep)
{
TrabBoneNL3DStatus *nlStatus = static_cast< TrabBoneNL3DStatus * >( this->giveStatus(gp) );
StructuralElement *elem = static_cast< StructuralElement * >( gp->giveElement() );
int nrows, nsize;
double sum, nlKappa, dDamFunc, dam, tempDam;
FloatArray localNu;
FloatMatrix b;
this->computeCumPlastStrain(nlKappa, gp, tStep);
dam = nlStatus->giveDam();
tempDam = nlStatus->giveTempDam();
if ( ( tempDam - dam ) > 0.0 ) {
elem->giveLocationArray(loc, s);
localNu = nlStatus->giveTempEffectiveStress();
elem->giveLocationArray(loc, EModelDefaultEquationNumbering() );
elem->computeBmatrixAt(gp, b);
dDamFunc = expDam * critDam * exp(-expDam * nlKappa);
nrows = b.giveNumberOfColumns();
nsize = localNu.giveSize();
lcontrib.resize(nrows);
for ( int i = 1; i <= nrows; i++ ) {
sum = 0.0;
for ( int j = 1; j <= nsize; j++ ) {
sum += b.at(j, i) * localNu.at(j);
}
lcontrib.at(i) = mParam * dDamFunc * sum;
}
return 1;
} else {
loc.clear();
return 0;
}
}
void XFEMStatic :: setValsFromDofMap(FloatArray &oArray, const FloatArray &iArray)
{
int neq = 0;
for ( int domainIndex = 1; domainIndex <= this->giveNumberOfDomains(); domainIndex++ ) {
neq += this->giveNumberOfDomainEquations( domainIndex, EModelDefaultEquationNumbering() );
}
int numEqOld = iArray.giveSize();
printf("Setting values from dof map. neq: %d numEqOld: %d\n", neq, numEqOld);
oArray.resize(neq);
oArray.zero();
for ( int domainIndex = 1; domainIndex <= this->giveNumberOfDomains(); domainIndex++ ) {
Domain *domain = this->giveDomain(domainIndex);
for ( int dManIndex = 1; dManIndex <= domain->giveNumberOfDofManagers(); dManIndex++ ) {
DofManager *dMan = domain->giveDofManager(dManIndex);
for ( Dof *dof: *dMan ) {
int eqNumNew = dof->giveEqn();
if ( eqNumNew > 0 ) {
std :: vector< int > key(3);
key [ 0 ] = domainIndex;
key [ 1 ] = dManIndex;
key [ 2 ] = dof->giveDofID();
if ( mDofEqnNumMap.find(key) != mDofEqnNumMap.end() ) {
int eqNumOld = mDofEqnNumMap [ key ];
// printf("eqNumNew: %d eqNumOld: %d\n", eqNumNew, eqNumOld);
if ( eqNumOld > 0 && eqNumOld <= numEqOld ) {
oArray.at(eqNumNew) = iArray.at(eqNumOld);
}
}
}
}
}
}
}
void
NonStationaryTransportProblem :: updateInternalState(TimeStep *tStep)
{
for ( auto &domain: domainList ) {
if ( requiresUnknownsDictionaryUpdate() ) {
//update temperature vector
UnknownsField->update( VM_Total, tStep, * ( this->UnknownsField->giveSolutionVector(tStep) ), EModelDefaultEquationNumbering() );
//update Rhs vector
UnknownsField->update(VM_RhsTotal, tStep, bcRhs, EModelDefaultEquationNumbering());
}
if ( internalVarUpdateStamp != tStep->giveSolutionStateCounter() ) {
for ( auto &elem : domain->giveElements() ) {
elem->updateInternalState(tStep);
}
internalVarUpdateStamp = tStep->giveSolutionStateCounter();
}
}
}
void NonStationaryTransportProblem :: solveYourselfAt(TimeStep *tStep)
{
// Creates system of governing eq's and solves them at given tStep
// The solution is stored in UnknownsField. If the problem is growing/decreasing, the UnknownsField is projected on DoFs when needed.
// If equations are not renumbered, the algorithm is efficient without projecting unknowns to DoFs (nodes).
//Right hand side
FloatArray rhs;
int neq = this->giveNumberOfEquations(EID_ConservationEquation);
#ifdef VERBOSE
OOFEM_LOG_RELEVANT( "Solving [step number %8d, time %15e]\n", tStep->giveNumber(), tStep->giveTargetTime() );
#endif
//Solution at the first time step needs history. Therefore, return back one time increment and create it.
if ( tStep->isTheFirstStep() ) {
this->giveSolutionStepWhenIcApply();
bcRhs.resize(neq); //rhs vector from solution step i-1
bcRhs.zero();
this->applyIC(stepWhenIcApply);
//project initial conditions to have temorary temperature in integration points
//edge or surface load on elements
this->assembleVectorFromElements( bcRhs, stepWhenIcApply, EID_ConservationEquation, ElementBCTransportVector,
VM_Total, EModelDefaultEquationNumbering(), this->giveDomain(1) );
//add prescribed value, such as temperature, on nodes
this->assembleDirichletBcRhsVector( bcRhs, stepWhenIcApply, EID_ConservationEquation, VM_Total,
NSTP_MidpointLhs, EModelDefaultEquationNumbering(), this->giveDomain(1) );
//add internal source vector on elements
this->assembleVectorFromElements( bcRhs, stepWhenIcApply, EID_ConservationEquation, ElementInternalSourceVector,
VM_Total, EModelDefaultEquationNumbering(), this->giveDomain(1) );
//add nodal load
this->assembleVectorFromDofManagers( bcRhs, stepWhenIcApply, EID_ConservationEquation, ExternalForcesVector,
VM_Total, EModelDefaultEquationNumbering(), this->giveDomain(1) );
}
//Create a new lhs matrix if necessary
if ( tStep->isTheFirstStep() || this->changingProblemSize ) {
if ( conductivityMatrix ) {
delete conductivityMatrix;
}
conductivityMatrix = CreateUsrDefSparseMtrx(sparseMtrxType);
if ( conductivityMatrix == NULL ) {
_error("solveYourselfAt: sparse matrix creation failed");
}
conductivityMatrix->buildInternalStructure( this, 1, EID_ConservationEquation, EModelDefaultEquationNumbering() );
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling conductivity and capacity matrices\n");
#endif
this->assemble( conductivityMatrix, stepWhenIcApply, EID_ConservationEquation, LHSBCMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
conductivityMatrix->times(alpha);
this->assemble( conductivityMatrix, stepWhenIcApply, EID_ConservationEquation, NSTP_MidpointLhs,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
}
//obtain the last Rhs vector from DoFs directly
if ( !tStep->isTheFirstStep() && this->changingProblemSize ) {
UnknownsField->initialize(VM_RhsTotal, tStep, bcRhs);
}
//prepare position in UnknownsField to store the results
UnknownsField->advanceSolution(tStep);
FloatArray *solutionVector = UnknownsField->giveSolutionVector(tStep);
solutionVector->resize(neq);
solutionVector->zero();
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling rhs\n");
#endif
// assembling load from elements
rhs = bcRhs;
rhs.times(1. - alpha);
bcRhs.zero();
this->assembleVectorFromElements( bcRhs, tStep, EID_ConservationEquation, ElementBCTransportVector,
VM_Total, EModelDefaultEquationNumbering(), this->giveDomain(1) );
this->assembleDirichletBcRhsVector( bcRhs, tStep, EID_ConservationEquation, VM_Total, NSTP_MidpointLhs,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
this->assembleVectorFromElements( bcRhs, tStep, EID_ConservationEquation, ElementInternalSourceVector,
VM_Total, EModelDefaultEquationNumbering(), this->giveDomain(1) );
// assembling load from nodes
this->assembleVectorFromDofManagers( bcRhs, tStep, EID_ConservationEquation, InternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
for ( int i = 1; i <= neq; i++ ) {
rhs.at(i) += bcRhs.at(i) * alpha;
}
// add the rhs part depending on previous solution
assembleAlgorithmicPartOfRhs( rhs, EID_ConservationEquation,
EModelDefaultEquationNumbering(), tStep->givePreviousStep() );
// set-up numerical model
this->giveNumericalMethod( this->giveCurrentMetaStep() );
//
// call numerical model to solve arised problem
//
#ifdef VERBOSE
OOFEM_LOG_INFO("Solving ...\n");
#endif
UnknownsField->giveSolutionVector(tStep)->resize(neq);
nMethod->solve( conductivityMatrix, & rhs, UnknownsField->giveSolutionVector(tStep) );
// update solution state counter
tStep->incrementStateCounter();
}
void FreeWarping :: solveYourselfAt(TimeStep *tStep)
{
//
// creates system of governing eq's and solves them at given time step
//
// first assemble problem at current time step
if ( initFlag ) {
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Assembling stiffness matrix\n");
#endif
//
// first step assemble stiffness Matrix
//
stiffnessMatrix = classFactory.createSparseMtrx(sparseMtrxType);
if ( stiffnessMatrix == NULL ) {
OOFEM_ERROR("sparse matrix creation failed");
}
stiffnessMatrix->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
this->assemble( *stiffnessMatrix, tStep, TangentAssembler(TangentStiffness),
EModelDefaultEquationNumbering(), this->giveDomain(1) );
initFlag = 0;
}
#ifdef VERBOSE
OOFEM_LOG_DEBUG("Assembling load\n");
#endif
//
// allocate space for displacementVector
//
displacementVector.resize( this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ) );
displacementVector.zero();
//
// assembling the load vector
//
loadVector.resize( this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ) );
loadVector.zero();
this->assembleVector( loadVector, tStep, ExternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
//
// internal forces (from Dirichlet b.c's, or thermal expansion, etc.)
//
// no such forces exist for the free warping problem
/*
FloatArray internalForces( this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() ) );
internalForces.zero();
this->assembleVector( internalForces, tStep, InternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
loadVector.subtract(internalForces);
*/
this->updateSharedDofManagers(loadVector, EModelDefaultEquationNumbering(), ReactionExchangeTag);
//
// set-up numerical model
//
this->giveNumericalMethod( this->giveMetaStep( tStep->giveMetaStepNumber() ) );
//
// call numerical model to solve arose problem
//
#ifdef VERBOSE
OOFEM_LOG_INFO("\n\nSolving ...\n\n");
#endif
NM_Status s = nMethod->solve(*stiffnessMatrix, loadVector, displacementVector);
if ( !( s & NM_Success ) ) {
OOFEM_ERROR("No success in solving system.");
}
tStep->incrementStateCounter(); // update solution state counter
}
void StokesFlow :: solveYourselfAt(TimeStep *tStep)
{
Domain *d = this->giveDomain(1);
FloatArray externalForces;
FloatArray incrementOfSolution;
if ( d->giveNumberOfElements() == 0 && d->giveTopology() ) {
d->giveTopology()->replaceFEMesh();
this->meshqualityee.reset( new MeshQualityErrorEstimator( 1, d ) );
}
if ( d->giveTopology() && this->meshqualityee ) {
// Check the quality of the deformed mesh.
double meshdeformation = this->meshqualityee->giveValue(globalErrorEEV, tStep);
if ( this->giveProblemScale() == macroScale ) {
OOFEM_LOG_INFO("StokesFlow :: solveYourselfAt - Mesh deformation at %e\n", meshdeformation);
}
if ( this->ts == TS_NeedsRemeshing || meshdeformation > this->maxdef ) {
d->giveTopology()->replaceFEMesh();
OOFEM_LOG_INFO( "StokesFlow :: solveYourselfAt - New mesh created (%d elements).\n", d->giveNumberOfElements() );
/*meshdeformation =*/ this->meshqualityee->giveValue(globalErrorEEV, tStep);
this->giveExportModuleManager()->initialize();
}
}
int neq = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
// Move solution space to current time step
velocityPressureField->advanceSolution(tStep);
// Point pointer SolutionVector to current solution in velocityPressureField
velocityPressureField->initialize(VM_Total, tStep, solutionVector, EModelDefaultEquationNumbering() );
// Create "stiffness matrix"
if ( !this->stiffnessMatrix ) {
this->stiffnessMatrix.reset( classFactory.createSparseMtrx(sparseMtrxType) );
if ( !this->stiffnessMatrix ) {
OOFEM_ERROR("Couldn't create requested sparse matrix of type %d", sparseMtrxType);
}
this->stiffnessMatrix->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
}
incrementOfSolution.resize(neq);
this->internalForces.resize(neq);
// Build initial/external load (LoadVector)
externalForces.resize(neq);
externalForces.zero();
this->assembleVector( externalForces, tStep, ExternalForceAssembler(), VM_Total,
EModelDefaultEquationNumbering(), d );
this->updateSharedDofManagers(externalForces, EModelDefaultEquationNumbering(), LoadExchangeTag);
if ( this->giveProblemScale() == macroScale ) {
OOFEM_LOG_INFO("StokesFlow :: solveYourselfAt - Solving step %d, metastep %d, (neq = %d)\n", tStep->giveNumber(), tStep->giveMetaStepNumber(), neq);
}
this->giveNumericalMethod( this->giveCurrentMetaStep() );
this->initMetaStepAttributes( this->giveCurrentMetaStep() );
#if 1
double loadLevel;
int currentIterations;
this->updateComponent( tStep, InternalRhs, d );
NM_Status status = this->nMethod->solve(*this->stiffnessMatrix,
externalForces,
NULL,
solutionVector,
incrementOfSolution,
this->internalForces,
this->eNorm,
loadLevel, // Only relevant for incrementalBCLoadVector?
SparseNonLinearSystemNM :: rlm_total,
currentIterations,
tStep);
#else
this->updateComponent( tStep, InternalRhs, d );
this->updateComponent( tStep, NonLinearLhs, d );
this->internalForces.negated();
this->internalForces.add(externalForces);
NM_Status status = this->nMethod->giveLinearSolver()->solve(this->stiffnessMatrix.get(), & ( this->internalForces ), & solutionVector);
this->updateComponent( tStep, NonLinearLhs, d );
#endif
if ( !( status & NM_Success ) ) {
OOFEM_ERROR("No success in solving problem at time step", tStep->giveNumber());
}
}
void DEIDynamic :: solveYourselfAt(TimeStep *tStep)
{
//
// creates system of governing eq's and solves them at given time step
//
// this is an explicit problem: we assemble governing equating at time t
// and solution is obtained for time t+dt
//
// first assemble problem at current time step to obtain results in following
// time step.
// and then print results for this step also.
// for first time step we need special start code
Domain *domain = this->giveDomain(1);
int nelem = domain->giveNumberOfElements();
int nman = domain->giveNumberOfDofManagers();
IntArray loc;
Element *element;
DofManager *node;
Dof *iDof;
int nDofs, neq;
int i, k, n, j, jj, kk, init = 0;
double coeff, maxDt, maxOmi, maxOm = 0., maxOmEl, c1, c2, c3;
FloatMatrix charMtrx, charMtrx2;
FloatArray previousDisplacementVector;
neq = this->giveNumberOfEquations(EID_MomentumBalance);
if ( tStep->giveNumber() == giveNumberOfFirstStep() ) {
init = 1;
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling mass matrix\n");
#endif
//
// first step assemble mass Matrix
//
massMatrix.resize(neq);
massMatrix.zero();
EModelDefaultEquationNumbering dn;
for ( i = 1; i <= nelem; i++ ) {
element = domain->giveElement(i);
element->giveLocationArray(loc, EID_MomentumBalance, dn);
element->giveCharacteristicMatrix(charMtrx, LumpedMassMatrix, tStep);
// charMtrx.beLumpedOf(fullCharMtrx);
element->giveCharacteristicMatrix(charMtrx2, StiffnessMatrix, tStep);
//
// assemble it manually
//
#ifdef DEBUG
if ( ( n = loc.giveSize() ) != charMtrx.giveNumberOfRows() ) {
_error("solveYourselfAt : dimension mismatch");
}
#endif
n = loc.giveSize();
maxOmEl = 0.;
for ( j = 1; j <= n; j++ ) {
if ( charMtrx.at(j, j) > ZERO_MASS ) {
maxOmi = charMtrx2.at(j, j) / charMtrx.at(j, j);
if ( init ) {
maxOmEl = ( maxOmEl > maxOmi ) ? ( maxOmEl ) : ( maxOmi );
}
}
}
maxOm = ( maxOm > maxOmEl ) ? ( maxOm ) : ( maxOmEl );
for ( j = 1; j <= n; j++ ) {
jj = loc.at(j);
if ( ( jj ) && ( charMtrx.at(j, j) <= ZERO_MASS ) ) {
charMtrx.at(j, j) = charMtrx2.at(j, j) / maxOmEl;
}
}
for ( j = 1; j <= n; j++ ) {
jj = loc.at(j);
if ( jj ) {
massMatrix.at(jj) += charMtrx.at(j, j);
}
}
}
// if init - try to determine the best deltaT
if ( init ) {
maxDt = 2 / sqrt(maxOm);
if ( deltaT > maxDt ) {
OOFEM_LOG_RELEVANT("DEIDynamic: deltaT reduced to %e\n", maxDt);
deltaT = maxDt;
tStep->setTimeIncrement(deltaT);
}
}
//
// special init step - compute displacements at tstep 0
//
displacementVector.resize(neq);
displacementVector.zero();
nextDisplacementVector.resize(neq);
nextDisplacementVector.zero();
velocityVector.resize(neq);
velocityVector.zero();
accelerationVector.resize(neq);
accelerationVector.zero();
for ( j = 1; j <= nman; j++ ) {
node = domain->giveDofManager(j);
nDofs = node->giveNumberOfDofs();
for ( k = 1; k <= nDofs; k++ ) {
// ask for initial values obtained from
// bc (boundary conditions) and ic (initial conditions)
// now we are setting initial cond. for step -1.
iDof = node->giveDof(k);
if ( !iDof->isPrimaryDof() ) {
continue;
}
jj = iDof->__giveEquationNumber();
if ( jj ) {
nextDisplacementVector.at(jj) = iDof->giveUnknown(EID_MomentumBalance, VM_Total, tStep);
// become displacementVector after init
velocityVector.at(jj) = iDof->giveUnknown(EID_MomentumBalance, VM_Velocity, tStep);
// accelerationVector = iDof->giveUnknown(AccelerartionVector,tStep) ;
}
}
}
for ( j = 1; j <= neq; j++ ) {
nextDisplacementVector.at(j) -= velocityVector.at(j) * ( deltaT );
}
return;
} // end of init step
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling right hand side\n");
#endif
c1 = ( 1. / ( deltaT * deltaT ) );
c2 = ( 1. / ( 2. * deltaT ) );
c3 = ( 2. / ( deltaT * deltaT ) );
previousDisplacementVector = displacementVector;
displacementVector = nextDisplacementVector;
//
// assembling the element part of load vector
//
loadVector.resize( this->giveNumberOfEquations(EID_MomentumBalance) );
loadVector.zero();
this->assembleVector(loadVector, tStep, EID_MomentumBalance, ExternalForcesVector,
VM_Total, EModelDefaultEquationNumbering(), domain);
//
// assembling additional parts of right hand side
//
EModelDefaultEquationNumbering dn;
for ( i = 1; i <= nelem; i++ ) {
element = domain->giveElement(i);
element->giveLocationArray(loc, EID_MomentumBalance, dn);
element->giveCharacteristicMatrix(charMtrx, StiffnessMatrix, tStep);
n = loc.giveSize();
for ( j = 1; j <= n; j++ ) {
jj = loc.at(j);
if ( jj ) {
for ( k = 1; k <= n; k++ ) {
kk = loc.at(k);
if ( kk ) {
loadVector.at(jj) -= charMtrx.at(j, k) * displacementVector.at(kk);
}
}
//
// if init step - find minimum period of vibration in order to
// determine maximal admissible time step
//
//maxOmi = charMtrx.at(j,j)/massMatrix.at(jj) ;
//if (init) maxOm = (maxOm > maxOmi) ? (maxOm) : (maxOmi) ;
}
}
}
for ( j = 1; j <= neq; j++ ) {
coeff = massMatrix.at(j);
loadVector.at(j) += coeff * c3 * displacementVector.at(j) -
coeff * ( c1 - dumpingCoef * c2 ) *
previousDisplacementVector.at(j);
}
//
// set-up numerical model
//
/* it is not necessary to call numerical method
* approach used here is not good, but effective enough
* inverse of diagonal mass matrix is done here
*/
//
// call numerical model to solve arose problem - done locally here
//
#ifdef VERBOSE
OOFEM_LOG_RELEVANT( "Solving [step number %8d, time %15e]\n", tStep->giveNumber(), tStep->giveTargetTime() );
#endif
double prevD;
for ( i = 1; i <= neq; i++ ) {
prevD = previousDisplacementVector.at(i);
nextDisplacementVector.at(i) = loadVector.at(i) /
( massMatrix.at(i) * ( c1 + dumpingCoef * c2 ) );
velocityVector.at(i) = nextDisplacementVector.at(i) - prevD;
accelerationVector.at(i) =
nextDisplacementVector.at(i) -
2. * displacementVector.at(i) + prevD;
}
accelerationVector.times(c1);
velocityVector.times(c2);
}
void NLTransientTransportProblem :: solveYourselfAt(TimeStep *tStep)
{
// creates system of governing eq's and solves them at given time step
// first assemble problem at current time step
// Right hand side
FloatArray rhs;
double solutionErr, incrementErr;
int neq = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
#ifdef VERBOSE
OOFEM_LOG_RELEVANT( "Solving [step number %8d, time %15e]\n", tStep->giveNumber(), tStep->giveTargetTime() );
#endif
//Delete lhs matrix and create a new one. This is necessary due to growing/decreasing number of equations.
if ( tStep->isTheFirstStep() || this->changingProblemSize ) {
if ( conductivityMatrix ) {
delete conductivityMatrix;
}
conductivityMatrix = classFactory.createSparseMtrx(sparseMtrxType);
if ( conductivityMatrix == NULL ) {
OOFEM_ERROR("sparse matrix creation failed");
}
conductivityMatrix->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
#ifdef VERBOSE
OOFEM_LOG_INFO("Assembling conductivity and capacity matrices\n");
#endif
}
//create previous solution from IC or from previous tStep
if ( tStep->isTheFirstStep() ) {
if ( !stepWhenIcApply ) {
stepWhenIcApply.reset( new TimeStep( *tStep->givePreviousStep() ) );
}
this->applyIC(stepWhenIcApply.get()); //insert solution to hash=1(previous), if changes in equation numbering
}
double dTTau = tStep->giveTimeIncrement();
double Tau = tStep->giveTargetTime() - ( 1. - alpha ) * tStep->giveTimeIncrement();
//Time step in which material laws are taken into account
TimeStep TauStep(tStep->giveNumber(), this, tStep->giveMetaStepNumber(), Tau, dTTau, tStep->giveSolutionStateCounter() + 1);
//Predictor
FloatArray *solutionVector;
UnknownsField->advanceSolution(tStep);
solutionVector = UnknownsField->giveSolutionVector(tStep);
//Initialize and give solutionVector from previous solution
if ( changingProblemSize ) {
if ( !tStep->isTheFirstStep() ) {
//copy recent solution to previous position, copy from hash=0 to hash=1(previous)
copyUnknownsInDictionary( VM_Total, tStep, tStep->givePreviousStep() );
}
UnknownsField->initialize( VM_Total, tStep->givePreviousStep(), *solutionVector, EModelDefaultEquationNumbering() );
} else {
//copy previous solution vector to actual
*solutionVector = *UnknownsField->giveSolutionVector( tStep->givePreviousStep() );
}
this->updateInternalState(& TauStep); //insert to hash=0(current), if changes in equation numbering
FloatArray solutionVectorIncrement(neq);
int nite = 0;
OOFEM_LOG_INFO("Time Iter ResidNorm IncrNorm\n__________________________________________________________\n");
do {
nite++;
// Corrector
#ifdef VERBOSE
// printf("\nAssembling conductivity and capacity matrices");
#endif
if ( ( nite == 1 ) || ( NR_Mode == nrsolverFullNRM ) || ( ( NR_Mode == nrsolverAccelNRM ) && ( nite % MANRMSteps == 0 ) ) ) {
conductivityMatrix->zero();
//Assembling left hand side - start with conductivity matrix
this->assemble( *conductivityMatrix, & TauStep, IntSourceLHSMatrix,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
conductivityMatrix->times(alpha);
//Add capacity matrix
this->assemble( *conductivityMatrix, & TauStep, NSTP_MidpointLhs,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
}
rhs.resize(neq);
rhs.zero();
//edge or surface load on element
this->assembleVectorFromElements( rhs, & TauStep, ElementBCTransportVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
//add internal source vector on elements
this->assembleVectorFromElements( rhs, & TauStep, ElementInternalSourceVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
//add nodal load
this->assembleVectorFromDofManagers( rhs, & TauStep, ExternalForcesVector, VM_Total,
EModelDefaultEquationNumbering(), this->giveDomain(1) );
// subtract the rhs part depending on previous solution
assembleAlgorithmicPartOfRhs(rhs, EModelDefaultEquationNumbering(), & TauStep);
// set-up numerical model
this->giveNumericalMethod( this->giveCurrentMetaStep() );
// call numerical model to solve arised problem
#ifdef VERBOSE
//OOFEM_LOG_INFO("Solving ...\n");
#endif
// compute norm of residuals from balance equations
solutionErr = rhs.computeNorm();
linSolver->solve(*conductivityMatrix, rhs, solutionVectorIncrement);
solutionVector->add(solutionVectorIncrement);
this->updateInternalState(& TauStep); //insert to hash=0(current), if changes in equation numbering
// compute error in the solutionvector increment
incrementErr = solutionVectorIncrement.computeNorm();
// update solution state counter
TauStep.incrementStateCounter();
tStep->incrementStateCounter();
OOFEM_LOG_INFO("%-15e %-10d %-15e %-15e\n", tStep->giveTargetTime(), nite, solutionErr, incrementErr);
if ( nite >= nsmax ) {
OOFEM_ERROR("convergence not reached after %d iterations", nsmax);
}
} while ( ( fabs(solutionErr) > rtol ) || ( fabs(incrementErr) > rtol ) );
}
void
SUPG :: solveYourselfAt(TimeStep *tStep)
{
int neq = this->giveNumberOfDomainEquations( 1, EModelDefaultEquationNumbering() );
FloatArray *solutionVector = NULL, *prevSolutionVector = NULL;
FloatArray externalForces(neq);
this->internalForces.resize(neq);
if ( tStep->isTheFirstStep() ) {
TimeStep *stepWhenIcApply = tStep->givePreviousStep();
if ( materialInterface ) {
materialInterface->initialize();
}
this->applyIC(stepWhenIcApply);
//if (this->fsflag) this->updateDofManActivityMap(tStep);
}
if ( !requiresUnknownsDictionaryUpdate() ) {
VelocityPressureField->advanceSolution(tStep);
solutionVector = VelocityPressureField->giveSolutionVector(tStep);
prevSolutionVector = VelocityPressureField->giveSolutionVector( tStep->givePreviousStep() );
}
if ( initFlag ) {
if ( !requiresUnknownsDictionaryUpdate() ) {
//previousAccelerationVector.resize(neq);
accelerationVector.resize(neq);
solutionVector->resize(neq);
prevSolutionVector->resize(neq);
}
incrementalSolutionVector.resize(neq);
lhs.reset( classFactory.createSparseMtrx(sparseMtrxType) );
if ( !lhs ) {
OOFEM_ERROR("sparse matrix creation failed");
}
lhs->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
if ( materialInterface ) {
this->updateElementsForNewInterfacePosition(tStep);
}
initFlag = 0;
} else if ( requiresUnknownsDictionaryUpdate() ) {
// rebuild lhs structure and resize solution vector
incrementalSolutionVector.resize(neq);
lhs->buildInternalStructure( this, 1, EModelDefaultEquationNumbering() );
}
if ( !requiresUnknownsDictionaryUpdate() ) {
*solutionVector = *prevSolutionVector;
}
//previousAccelerationVector=accelerationVector;
// evaluate element supg and sppg stabilization coeffs
this->evaluateElementStabilizationCoeffs(tStep);
//
// predictor
//
if ( requiresUnknownsDictionaryUpdate() ) {
this->updateDofUnknownsDictionary_predictor(tStep);
} else {
this->updateSolutionVectors_predictor(* solutionVector, accelerationVector, tStep);
}
if ( tStep->giveNumber() != 1 ) {
if ( materialInterface ) {
//if (this->fsflag) updateDofManVals(tStep);
#ifdef SUPG_IMPLICIT_INTERFACE
#ifdef TIME_REPORT
Timer timer;
timer.startTimer();
#endif
materialInterface->updatePosition( this->giveCurrentStep() );
updateElementsForNewInterfacePosition(tStep);
#ifdef TIME_REPORT
timer.stopTimer();
OOFEM_LOG_INFO("SUPG info: user time consumed by updating interfaces: %.2fs\n", timer.getUtime();
);
#endif
#else
//updateElementsForNewInterfacePosition (tStep);
#endif
//if (this->fsflag) this->updateDofManActivityMap(tStep);
}
}