//--------------------------------------------------------------------------
// Function: CommonFG::move
///\brief Renames an object at this location.
///\param src - IN: Object's original name
///\param dst - IN: Object's new name
///\exception H5::FileIException or H5::GroupIException
///\note
/// Exercise care in moving groups as it is possible to render
/// data in a file inaccessible with Group::move. Please refer
/// to the Group Interface in the HDF5 User's Guide for details at:
/// http://www.hdfgroup.org/HDF5/doc/UG/UG_frame09Groups.html
// Programmer Binh-Minh Ribler - 2000
// Modification
// 2007: QAK modified to use H5L APIs - BMR
//--------------------------------------------------------------------------
void CommonFG::move( const char* src, const char* dst ) const
{
herr_t ret_value = H5Lmove( getLocId(), src, H5L_SAME_LOC, dst, H5P_DEFAULT, H5P_DEFAULT );
if( ret_value < 0 )
{
throwException("move", "H5Lmove failed");
}
}
void hdf5_h5l_move(value src_loc_v, value src_name_v, value dest_loc_v, value lcpl_v,
value lapl_v, value dest_name_v)
{
CAMLparam5(src_loc_v, src_name_v, dest_loc_v, lcpl_v, lapl_v);
CAMLxparam1(dest_name_v);
raise_if_fail(H5Lmove(Hid_val(src_loc_v), String_val(src_name_v), Hid_val(dest_loc_v),
String_val(dest_name_v), H5P_opt_val(lcpl_v), H5P_opt_val(lapl_v)));
CAMLreturn0;
}
/*
* Class: hdf_hdf5lib_H5
* Method: H5Lmove
* Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Lmove
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
herr_t status = -1;
const char *lCurName;
const char *lDstName;
PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
if (lCurName != NULL && lDstName != NULL) {
status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
if (status < 0)
h5libraryError(env);
}
} /* end Java_hdf_hdf5lib_H5_H5Lmove */
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void DataContainerReader::readData(bool preflight, DataContainerArrayProxy& proxy, DataContainerArray::Pointer dca)
{
setErrorCondition(0);
QString ss;
int32_t err = 0;
QString m_FileVersion;
float fVersion = 0.0f;
bool check = false;
// qDebug() << "DataContainerReader::readData() " << m_InputFile;
// Read the Meta Data and Array names from the file
hid_t fileId = QH5Utilities::openFile(m_InputFile, true); // Open the file Read Only
if (fileId < 0)
{
ss = QObject::tr("Error opening input file '%1'").arg(m_InputFile);
setErrorCondition(-150);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
// This will make sure if we return early from this method that the HDF5 File is properly closed.
HDF5ScopedFileSentinel scopedFileSentinel(&fileId, true);
// Check to see if version of .dream3d file is prior to new data container names
err = QH5Lite::readStringAttribute(fileId, "/", DREAM3D::HDF5::FileVersionName, m_FileVersion);
fVersion = m_FileVersion.toFloat(&check);
if (fVersion < 5.0 || err < 0)
{
QH5Utilities::closeFile(fileId);
fileId = QH5Utilities::openFile(m_InputFile, false); // Re-Open the file as Read/Write
err = H5Lmove(fileId, "VoxelDataContainer", fileId, DREAM3D::Defaults::DataContainerName.toLatin1().data(), H5P_DEFAULT, H5P_DEFAULT);
err = H5Lmove(fileId, "SurfaceMeshDataContainer", fileId, DREAM3D::Defaults::DataContainerName.toLatin1().data(), H5P_DEFAULT, H5P_DEFAULT);
err = QH5Lite::writeStringAttribute(fileId, "/", DREAM3D::HDF5::FileVersionName, "5.0");
QH5Utilities::closeFile(fileId);
fileId = QH5Utilities::openFile(m_InputFile, true); // Re-Open the file as Read Only
}
if (fVersion < 7.0)
{
ss = QObject::tr("File unable to be read - file structure older than 7.0");
setErrorCondition(-250);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
hid_t dcaGid = H5Gopen(fileId, DREAM3D::StringConstants::DataContainerGroupName.toLatin1().data(), 0);
if (dcaGid < 0)
{
setErrorCondition(-1923123);
QString ss = QObject::tr("Error attempting to open the HDF5 Group '%1'").arg(DREAM3D::StringConstants::DataContainerGroupName);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
scopedFileSentinel.addGroupId(&dcaGid);
err = dca->readDataContainersFromHDF5(preflight, dcaGid, proxy, this);
if (err < 0)
{
setErrorCondition(err);
QString ss = QObject::tr("Error trying to read the DataContainers from the file '%1'").arg(getInputFile());
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
err = H5Gclose(dcaGid);
dcaGid = -1;
err = readDataContainerBundles(fileId, dca);
if (err < 0)
{
setErrorCondition(err);
QString ss = QObject::tr("Error trying to read the DataContainerBundles from the file '%1'").arg(getInputFile());
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
if (!getInPreflight())
{
err = readExistingPipelineFromFile(fileId);
if(err < 0)
{
setErrorCondition(err);
QString ss = QObject::tr("Error trying to read the existing pipeline from the file '%1'").arg(getInputFile());
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
}
}