/*------------------------------------------------------------------------- * Function: H5Pset_sym_k * * Purpose: IK is one half the rank of a tree that stores a symbol * table for a group. Internal nodes of the symbol table are on * average 75% full. That is, the average rank of the tree is * 1.5 times the value of IK. * * LK is one half of the number of symbols that can be stored in * a symbol table node. A symbol table node is the leaf of a * symbol table tree which is used to store a group. When * symbols are inserted randomly into a group, the group's * symbol table nodes are 75% full on average. That is, they * contain 1.5 times the number of symbols specified by LK. * * Either (or even both) of IK and LK can be zero in which case * that value is left unchanged. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, January 6, 1998 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed to the new generic property list. * *------------------------------------------------------------------------- */ herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk) { unsigned btree_k[H5B_NUM_BTREE_ID]; H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_API(H5Pset_sym_k, FAIL); H5TRACE3("e","iIuIu",plist_id,ik,lk); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_FILE_CREATE))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Set values */ if (ik > 0) { if(H5P_get(plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get rank for btree interanl nodes"); btree_k[H5B_SNODE_ID] = ik; if(H5P_set(plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set rank for btree nodes"); } if (lk > 0) if(H5P_set(plist, H5F_CRT_SYM_LEAF_NAME, &lk) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set rank for symbol table leaf nodes"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_buffer * * Purpose: Given a dataset transfer property list, set the maximum size * for the type conversion buffer and background buffer and * optionally supply pointers to application-allocated buffers. * If the buffer size is smaller than the entire amount of data * being transfered between application and file, and a type * conversion buffer or background buffer is required then * strip mining will be used. * * If TCONV and/or BKG are null pointers then buffers will be * allocated and freed during the data transfer. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, March 16, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_buffer(hid_t plist_id, hsize_t _size, void *tconv, void *bkg) { H5P_genplist_t *plist; /* Property list pointer */ size_t size=(size_t)_size; /* Work around size difference */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_buffer, FAIL); H5TRACE4("e","ihxx",plist_id,_size,tconv,bkg); /* Check arguments */ if (size<=0) HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "buffer size must not be zero"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ if(H5P_set(plist, H5D_XFER_MAX_TEMP_BUF_NAME, &size)<0) HGOTO_ERROR (H5E_PLIST, H5E_CANTSET, FAIL, "Can't set transfer buffer size"); if(H5P_set(plist, H5D_XFER_TCONV_BUF_NAME, &tconv)<0) HGOTO_ERROR (H5E_PLIST, H5E_CANTSET, FAIL, "Can't set transfer type conversion buffer"); if(H5P_set(plist, H5D_XFER_BKGR_BUF_NAME, &bkg)<0) HGOTO_ERROR (H5E_PLIST, H5E_CANTSET, FAIL, "Can't set background type conversion buffer"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_btree_ratios * * Purpose: Sets B-tree split ratios for a dataset transfer property * list. The split ratios determine what percent of children go * in the first node when a node splits. The LEFT ratio is * used when the splitting node is the left-most node at its * level in the tree; the RIGHT ratio is when the splitting node * is the right-most node at its level; and the MIDDLE ratio for * all other cases. A node which is the only node at its level * in the tree uses the RIGHT ratio when it splits. All ratios * are real numbers between 0 and 1, inclusive. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, September 28, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle, double right) { double split_ratio[3]; /* B-tree node split ratios */ H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_btree_ratios, FAIL); H5TRACE4("e","iddd",plist_id,left,middle,right); /* Check arguments */ if (left<0.0 || left>1.0 || middle<0.0 || middle>1.0 || right<0.0 || right>1.0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "split ratio must satisfy 0.0<=X<=1.0"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Set values */ split_ratio[0] = left; split_ratio[1] = middle; split_ratio[2] = right; /* Set the split ratios */ if (H5P_set(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&split_ratio)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_istore_k * * Purpose: IK is one half the rank of a tree that stores chunked raw * data. On average, such a tree will be 75% full, or have an * average rank of 1.5 times the value of IK. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, January 6, 1998 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed to the new generic property list. * *------------------------------------------------------------------------- */ herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik) { unsigned btree_k[H5B_NUM_BTREE_ID]; H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_API(H5Pset_istore_k, FAIL); H5TRACE2("e","iIu",plist_id,ik); /* Check arguments */ if (ik == 0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "istore IK value must be positive"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_FILE_CREATE))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Set value */ if(H5P_get(plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get rank for btree interanl nodes"); btree_k[H5B_ISTORE_ID] = ik; if(H5P_set(plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set rank for btree interanl nodes"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_userblock * * Purpose: Sets the userblock size field of a file creation property * list. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, January 6, 1998 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed to the new generic property list. * *------------------------------------------------------------------------- */ herr_t H5Pset_userblock(hid_t plist_id, hsize_t size) { unsigned i; H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_userblock, FAIL); H5TRACE2("e","ih",plist_id,size); /* Check that the userblock size is a power of two */ for (i=8; i<8*sizeof(hsize_t); i++) { hsize_t p2 = 8==i ? 0 : ((hsize_t)1<<i); if (size == p2) break; } if (i>=8*sizeof(hsize_t)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "userblock size is not valid"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_FILE_CREATE))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Set value */ if(H5P_set(plist, H5F_CRT_USER_BLOCK_NAME, &size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set user block"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5P_set_vlen_mem_manager * * Purpose: Sets the memory allocate/free pair for VL datatypes. The * allocation routine is called when data is read into a new * array and the free routine is called when H5Dvlen_reclaim is * called. The alloc_info and free_info are user parameters * which are passed to the allocation and freeing functions * respectively. To reset the allocate/free functions to the * default setting of using the system's malloc/free functions, * call this routine with alloc_func and free_func set to NULL. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Thursday, July 1, 1999 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5P_set_vlen_mem_manager(H5P_genplist_t *plist, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info) { herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_NOAPI(H5P_set_vlen_mem_manager, FAIL); assert(plist); /* Update property list */ if (H5P_set(plist,H5D_XFER_VLEN_ALLOC_NAME,&alloc_func)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); if (H5P_set(plist,H5D_XFER_VLEN_ALLOC_INFO_NAME,&alloc_info)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); if (H5P_set(plist,H5D_XFER_VLEN_FREE_NAME,&free_func)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); if (H5P_set(plist,H5D_XFER_VLEN_FREE_INFO_NAME,&free_info)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_NOAPI(ret_value); } /* end H5P_set_vlen_mem_manager() */
/*------------------------------------------------------------------------- * Function: H5Pset_hyper_cache * * Purpose: Given a dataset transfer property list, indicate whether to * cache the hyperslab blocks during the I/O (which speeds * things up) and the maximum size of the hyperslab block to * cache. If a block is smaller than to limit, it may still not * be cached if no memory is available. Setting the limit to 0 * indicates no limitation on the size of block to attempt to * cache. * * The default is to cache blocks with no limit on block size * for serial I/O and to not cache blocks for parallel I/O * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Monday, September 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_hyper_cache(hid_t plist_id, unsigned cache, unsigned limit) { H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; FUNC_ENTER_API(H5Pset_hyper_cache, FAIL); H5TRACE3("e","iIuIu",plist_id,cache,limit); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ cache = (cache>0) ? 1 : 0; if (H5P_set(plist,H5D_XFER_HYPER_CACHE_NAME,&cache)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "unable to set value"); if (H5P_set(plist,H5D_XFER_HYPER_CACHE_LIM_NAME,&limit)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_sizes * * Purpose: Sets file size-of addresses and sizes. PLIST_ID should be a * file creation property list. A value of zero causes the * property to not change. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, January 6, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr, size_t sizeof_size) { H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_sizes, FAIL); H5TRACE3("e","izz",plist_id,sizeof_addr,sizeof_size); /* Check arguments */ if (sizeof_addr) { if (sizeof_addr != 2 && sizeof_addr != 4 && sizeof_addr != 8 && sizeof_addr != 16) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file haddr_t size is not valid"); } if (sizeof_size) { if (sizeof_size != 2 && sizeof_size != 4 && sizeof_size != 8 && sizeof_size != 16) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file size_t size is not valid"); } /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_FILE_CREATE))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Set value */ if (sizeof_addr) if(H5P_set(plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &sizeof_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set byte number for an address"); if (sizeof_size) if(H5P_set(plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set byte number for object "); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_preserve * * Purpose: When reading or writing compound data types and the * destination is partially initialized and the read/write is * intended to initialize the other members, one must set this * property to TRUE. Otherwise the I/O pipeline treats the * destination datapoints as completely uninitialized. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, March 17, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_preserve(hid_t plist_id, hbool_t status) { H5T_bkg_t need_bkg; /* Value for background buffer type */ H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_preserve, FAIL); H5TRACE2("e","ib",plist_id,status); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ need_bkg = status ? H5T_BKG_YES : H5T_BKG_NO; if (H5P_set(plist,H5D_XFER_BKGR_BUF_TYPE_NAME,&need_bkg)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_hyper_vector_size * * Purpose: Given a dataset transfer property list, set the number of * "I/O vectors" (offset and length pairs) which are to be * accumulated in memory before being issued to the lower levels * of the library for reading or writing the actual data. * Increasing the number should give better performance, but use * more memory during hyperslab I/O. The vector size must be * greater than 1. * * The default is to use 1024 vectors for I/O during hyperslab * reading/writing. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Monday, July 9, 2001 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_hyper_vector_size(hid_t plist_id, size_t vector_size) { H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_hyper_vector_size, FAIL); H5TRACE2("e","iz",plist_id,vector_size); /* Check arguments */ if (vector_size<1) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "vector size too small"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ if (H5P_set(plist,H5D_XFER_HYPER_VECTOR_SIZE_NAME,&vector_size)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); } /* end H5Pset_hyper_vector_size() */
/*------------------------------------------------------------------------- * Function: H5Pset_filter_callback * * Purpose: Sets user's callback function for dataset transfer property * list. This callback function defines what user wants to do * if certain filter fails. * * Return: Non-negative on success/Negative on failure * * Programmer: Raymond Lu * Jan 14, 2003 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func, void *op_data) { H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ H5Z_cb_t cb_struct; FUNC_ENTER_API(H5Pset_filter_callback, FAIL); H5TRACE3("e","ixx",plist_id,func,op_data); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ cb_struct.func = func; cb_struct.op_data = op_data; if (H5P_set(plist,H5D_XFER_FILTER_CB_NAME,&cb_struct)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5Pset_edc_check * * Purpose: Enable or disable error-detecting for a dataset reading * process. This error-detecting algorithm is whichever * user chooses earlier. This function cannot control * writing process. * * Return: Non-negative on success/Negative on failure * * Programmer: Raymond Lu * Jan 3, 2003 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check) { H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_API(H5Pset_edc_check, FAIL); H5TRACE2("e","iZe",plist_id,check); /* Check argument */ if (check != H5Z_ENABLE_EDC && check != H5Z_DISABLE_EDC) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid value"); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); /* Update property list */ if (H5P_set(plist,H5D_XFER_EDC_NAME,&check)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value"); done: FUNC_LEAVE_API(ret_value); }
/*------------------------------------------------------------------------- * Function: H5F_sblock_load * * Purpose: Loads the superblock from the file, and deserializes * its information into the H5F_super_t structure. * * Return: Success: SUCCEED * Failure: NULL * * Programmer: Mike McGreevy * [email protected] * April 8, 2009 * *------------------------------------------------------------------------- */ static H5F_super_t * H5F_sblock_load(H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr, void *_udata) { H5F_super_t *sblock = NULL; /* File's superblock */ haddr_t base_addr = HADDR_UNDEF; /* Base address of file */ uint8_t sbuf[H5F_MAX_SUPERBLOCK_SIZE]; /* Buffer for superblock */ H5P_genplist_t *dxpl; /* DXPL object */ H5P_genplist_t *c_plist; /* File creation property list */ H5F_file_t *shared; /* shared part of `file' */ H5FD_t *lf; /* file driver part of `shared' */ haddr_t stored_eoa; /*relative end-of-addr in file */ haddr_t eof; /*end of file address */ uint8_t sizeof_addr; /* Size of offsets in the file (in bytes) */ uint8_t sizeof_size; /* Size of lengths in the file (in bytes) */ const size_t fixed_size = H5F_SUPERBLOCK_FIXED_SIZE; /*fixed sizeof superblock */ size_t variable_size; /*variable sizeof superblock */ uint8_t *p; /* Temporary pointer into encoding buffer */ unsigned super_vers; /* Superblock version */ hbool_t *dirtied = (hbool_t *)_udata; /* Set up dirtied out value */ H5F_super_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* check arguments */ HDassert(f); HDassert(H5F_addr_eq(addr, 0)); HDassert(dirtied); /* Short cuts */ shared = f->shared; lf = shared->lf; /* Get the shared file creation property list */ if(NULL == (c_plist = (H5P_genplist_t *)H5I_object(shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't get property list") /* Get the base address for the file in the VFD */ if(HADDR_UNDEF == (base_addr = H5FD_get_base_addr(lf))) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "failed to get base address for file driver") /* Allocate space for the superblock */ if(NULL == (sblock = H5FL_CALLOC(H5F_super_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Get the DXPL plist object for DXPL ID */ if(NULL == (dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't get property list") /* Read fixed-size portion of the superblock */ p = sbuf; H5_CHECK_OVERFLOW(fixed_size, size_t, haddr_t); if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)fixed_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, (haddr_t)0, fixed_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL, "unable to read superblock") /* Skip over signature (already checked when locating the superblock) */ p += H5F_SIGNATURE_LEN; /* Superblock version */ super_vers = *p++; if(super_vers > HDF5_SUPERBLOCK_VERSION_LATEST) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad superblock version number") if(H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set superblock version") /* Record the superblock version */ sblock->super_vers = super_vers; /* Sanity check */ HDassert(((size_t)(p - sbuf)) == fixed_size); /* Determine the size of the variable-length part of the superblock */ variable_size = (size_t)H5F_SUPERBLOCK_VARLEN_SIZE(super_vers, f); HDassert(variable_size > 0); HDassert(fixed_size + variable_size <= sizeof(sbuf)); /* Read in variable-sized portion of superblock */ if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)(fixed_size + variable_size)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, (haddr_t)fixed_size, variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read superblock") /* Check for older version of superblock format */ if(super_vers < HDF5_SUPERBLOCK_VERSION_2) { uint32_t status_flags; /* File status flags */ unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree internal node 'K' values */ unsigned sym_leaf_k; /* Symbol table leaf node's 'K' value */ /* Freespace version (hard-wired) */ if(HDF5_FREESPACE_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad free space version number") /* Root group version number (hard-wired) */ if(HDF5_OBJECTDIR_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad object directory version number") /* Skip over reserved byte */ p++; /* Shared header version number (hard-wired) */ if(HDF5_SHAREDHEADER_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad shared-header format version number") /* Size of file addresses */ sizeof_addr = *p++; if(sizeof_addr != 2 && sizeof_addr != 4 && sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number in an address") if(H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &sizeof_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number in an address") shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */ /* Size of file sizes */ sizeof_size = *p++; if(sizeof_size != 2 && sizeof_size != 4 && sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number for object size") if(H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number for object size") shared->sizeof_size = sizeof_size; /* Keep a local copy also */ /* Skip over reserved byte */ p++; /* Various B-tree sizes */ UINT16DECODE(p, sym_leaf_k); if(sym_leaf_k == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad symbol table leaf node 1/2 rank") if(H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &sym_leaf_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for symbol table leaf nodes") sblock->sym_leaf_k = sym_leaf_k; /* Keep a local copy also */ /* Need 'get' call to set other array values */ if(H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes") UINT16DECODE(p, btree_k[H5B_SNODE_ID]); if(btree_k[H5B_SNODE_ID] == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad 1/2 rank for btree internal nodes") /* * Delay setting the value in the property list until we've checked * for the indexed storage B-tree internal 'K' value later. */ /* File status flags (not really used yet) */ UINT32DECODE(p, status_flags); HDassert(status_flags <= 255); sblock->status_flags = (uint8_t)status_flags; if(sblock->status_flags & ~H5F_SUPER_ALL_FLAGS) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad flag value for superblock") /* * If the superblock version # is greater than 0, read in the indexed * storage B-tree internal 'K' value */ if(super_vers > HDF5_SUPERBLOCK_VERSION_DEF) { UINT16DECODE(p, btree_k[H5B_CHUNK_ID]); /* Reserved bytes are present only in version 1 */ if(super_vers == HDF5_SUPERBLOCK_VERSION_1) p += 2; /* reserved */ } /* end if */ else btree_k[H5B_CHUNK_ID] = HDF5_BTREE_CHUNK_IK_DEF; /* Set the B-tree internal node values, etc */ if(H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for btree internal nodes") HDmemcpy(sblock->btree_k, btree_k, sizeof(unsigned) * (size_t)H5B_NUM_BTREE_ID); /* Keep a local copy also */ /* Remainder of "variable-sized" portion of superblock */ H5F_addr_decode(f, (const uint8_t **)&p, &sblock->base_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &sblock->ext_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &sblock->driver_addr/*out*/); /* Allocate space for the root group symbol table entry */ HDassert(!sblock->root_ent); if(NULL == (sblock->root_ent = (H5G_entry_t *)H5MM_calloc(sizeof(H5G_entry_t)))) HGOTO_ERROR(H5E_FILE, H5E_CANTALLOC, NULL, "can't allocate space for root group symbol table entry") /* decode the root group symbol table entry */ if(H5G_ent_decode(f, (const uint8_t **)&p, sblock->root_ent) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, NULL, "can't decode root group symbol table entry") /* Set the root group address to the correct value */ sblock->root_addr = sblock->root_ent->header; /* * Check if superblock address is different from base address and * adjust base address and "end of address" address if so. */ if(!H5F_addr_eq(base_addr, sblock->base_addr)) { /* Check if the superblock moved earlier in the file */ if(H5F_addr_lt(base_addr, sblock->base_addr)) stored_eoa -= (sblock->base_addr - base_addr); else /* The superblock moved later in the file */ stored_eoa += (base_addr - sblock->base_addr); /* Adjust base address for offsets of the HDF5 data in the file */ sblock->base_addr = base_addr; /* Set the base address for the file in the VFD now */ if(H5FD_set_base_addr(lf, sblock->base_addr) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "failed to set base address for file driver") /* Indicate that the superblock should be marked dirty */ *dirtied = TRUE; } /* end if */ /* This step is for h5repart tool only. If user wants to change file driver * from family to sec2 while using h5repart, set the driver address to * undefined to let the library ignore the family driver information saved * in the superblock. */ if(H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) { /* Eliminate the driver info */ sblock->driver_addr = HADDR_UNDEF; /* Indicate that the superblock should be marked dirty */ *dirtied = TRUE; } /* end if */ /* Decode the optional driver information block */ if(H5F_addr_defined(sblock->driver_addr)) { uint8_t dbuf[H5F_MAX_DRVINFOBLOCK_SIZE]; /* Buffer for driver info block */ char drv_name[9]; /* Name of driver */ unsigned drv_vers; /* Version of driver info block */ size_t drv_variable_size; /* Size of variable-length portion of driver info block, in bytes */ /* Read in fixed-sized portion of driver info block */ p = dbuf; if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, sblock->driver_addr, (size_t)H5F_DRVINFOBLOCK_HDR_SIZE, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read driver information block") /* Version number */ drv_vers = *p++; if(drv_vers != HDF5_DRIVERINFO_VERSION_0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "bad driver information block version number") p += 3; /* reserved bytes */ /* Driver info size */ UINT32DECODE(p, drv_variable_size); /* Sanity check */ HDassert(H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size <= sizeof(dbuf)); /* Driver name and/or version */ HDstrncpy(drv_name, (const char *)p, (size_t)8); drv_name[8] = '\0'; p += 8; /* advance past name/version */ /* Check if driver matches driver information saved. Unfortunately, we can't push this * function to each specific driver because we're checking if the driver is correct. */ if(!HDstrncmp(drv_name, "NCSAfami", (size_t)8) && HDstrcmp(lf->cls->name, "family")) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "family driver should be used") if(!HDstrncmp(drv_name, "NCSAmult", (size_t)8) && HDstrcmp(lf->cls->name, "multi")) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "multi driver should be used") /* Read in variable-sized portion of driver info block */ if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE, drv_variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read file driver information") /* Decode driver information */ if(H5FD_sb_decode(lf, drv_name, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to decode driver information") } /* end if */
/*------------------------------------------------------------------------- * Function: H5F_read_superblock * * Purpose: Reads the superblock from the file or from the BUF. If * ADDR is a valid address, then it reads it from the file. * If not, then BUF must be non-NULL for it to read from the * BUF. * * Return: Success: SUCCEED * Failure: FAIL * * Programmer: Bill Wendling * [email protected] * Sept 12, 2003 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5F_read_superblock(H5F_t *f, hid_t dxpl_id, H5G_entry_t *root_ent) { haddr_t stored_eoa; /*relative end-of-addr in file */ haddr_t eof; /*end of file address */ uint8_t *q; /*ptr into temp I/O buffer */ size_t sizeof_addr = 0; size_t sizeof_size = 0; const size_t fixed_size = 24; /*fixed sizeof superblock */ unsigned sym_leaf_k = 0; size_t variable_size; /*variable sizeof superblock */ unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree internal node 'K' values */ H5F_file_t *shared = NULL; /* shared part of `file' */ H5FD_t *lf = NULL; /* file driver part of `shared' */ uint8_t *p; /* Temporary pointer into encoding buffers */ unsigned i; /* Index variable */ unsigned chksum; /* Checksum temporary variable */ size_t driver_size; /* Size of driver info block, in bytes */ char driver_name[9]; /* Name of driver, for driver info block */ unsigned super_vers; /* Super block version */ unsigned freespace_vers; /* Freespace info version */ unsigned obj_dir_vers; /* Object header info version */ unsigned share_head_vers; /* Shared header info version */ uint8_t buf[H5F_SUPERBLOCK_SIZE]; /* Local buffer */ H5P_genplist_t *c_plist; /* File creation property list */ herr_t ret_value = SUCCEED; /* Decoding */ FUNC_ENTER_NOAPI(H5F_read_superblock, FAIL) /* Short cuts */ shared = f->shared; lf = shared->lf; /* Get the shared file creation property list */ if (NULL == (c_plist = H5I_object(shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") /* Read the superblock if it hasn't been read before. */ if (HADDR_UNDEF == (shared->super_addr=H5F_locate_signature(lf,dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_NOTHDF5, FAIL, "unable to find file signature") if (H5FD_set_eoa(lf, shared->super_addr + fixed_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, shared->super_addr, fixed_size, buf) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, FAIL, "unable to read superblock") /* Signature, already checked */ p = buf + H5F_SIGNATURE_LEN; /* Superblock version */ super_vers = *p++; if (super_vers > HDF5_SUPERBLOCK_VERSION_MAX) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad superblock version number") if (H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set superblock version") /* Freespace version */ freespace_vers = *p++; if (HDF5_FREESPACE_VERSION != freespace_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad free space version number") if (H5P_set(c_plist, H5F_CRT_FREESPACE_VERS_NAME, &freespace_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to free space version") /* Root group version number */ obj_dir_vers = *p++; if (HDF5_OBJECTDIR_VERSION != obj_dir_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad object directory version number") if (H5P_set(c_plist, H5F_CRT_OBJ_DIR_VERS_NAME, &obj_dir_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set object directory version") /* Skip over reserved byte */ p++; /* Shared header version number */ share_head_vers = *p++; if (HDF5_SHAREDHEADER_VERSION != share_head_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad shared-header format version number") if (H5P_set(c_plist, H5F_CRT_SHARE_HEAD_VERS_NAME, &share_head_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set shared-header format version") /* Size of file addresses */ sizeof_addr = *p++; if (sizeof_addr != 2 && sizeof_addr != 4 && sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad byte number in an address") if (H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME,&sizeof_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set byte number in an address") shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */ /* Size of file sizes */ sizeof_size = *p++; if (sizeof_size != 2 && sizeof_size != 4 && sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad byte number for object size") if (H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set byte number for object size") shared->sizeof_size = sizeof_size; /* Keep a local copy also */ /* Skip over reserved byte */ p++; /* Various B-tree sizes */ UINT16DECODE(p, sym_leaf_k); if (sym_leaf_k == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, FAIL, "bad symbol table leaf node 1/2 rank") if (H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &sym_leaf_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set rank for symbol table leaf nodes") shared->sym_leaf_k = sym_leaf_k; /* Keep a local copy also */ /* Need 'get' call to set other array values */ if (H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get rank for btree internal nodes") UINT16DECODE(p, btree_k[H5B_SNODE_ID]); if (btree_k[H5B_SNODE_ID] == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, FAIL, "bad 1/2 rank for btree internal nodes") /* * Delay setting the value in the property list until we've checked * for the indexed storage B-tree internal 'K' value later. */ /* File consistency flags. Not really used yet */ UINT32DECODE(p, shared->consist_flags); assert(((size_t)(p - buf)) == fixed_size); /* Decode the variable-length part of the superblock... */ variable_size = (super_vers>0 ? 4 : 0) + /* Potential indexed storage B-tree internal 'K' value */ H5F_SIZEOF_ADDR(f) + /*base addr*/ H5F_SIZEOF_ADDR(f) + /*global free list*/ H5F_SIZEOF_ADDR(f) + /*end-of-address*/ H5F_SIZEOF_ADDR(f) + /*reserved address*/ H5G_SIZEOF_ENTRY(f); /*root group ptr*/ assert(fixed_size + variable_size <= sizeof(buf)); if (H5FD_set_eoa(lf, shared->super_addr + fixed_size+variable_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, shared->super_addr + fixed_size, variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read superblock") /* * If the superblock version # is greater than 0, read in the indexed * storage B-tree internal 'K' value */ if (super_vers > 0) { UINT16DECODE(p, btree_k[H5B_ISTORE_ID]); p += 2; /* reserved */ } else btree_k[H5B_ISTORE_ID] = HDF5_BTREE_ISTORE_IK_DEF; /* Set the B-tree internal node values, etc */ if (H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set rank for btree internal nodes") HDmemcpy(shared->btree_k, btree_k, sizeof(unsigned) * (size_t)H5B_NUM_BTREE_ID); /* Keep a local copy also */ H5F_addr_decode(f, (const uint8_t **)&p, &shared->base_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &shared->freespace_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &shared->driver_addr/*out*/); if (H5G_ent_decode(f, (const uint8_t **)&p, root_ent/*out*/) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read root symbol entry") /* * Check if superblock address is different from base address and * adjust base address and "end of address" address if so. */ if (!H5F_addr_eq(shared->super_addr,shared->base_addr)) { /* Check if the superblock moved earlier in the file */ if (H5F_addr_lt(shared->super_addr, shared->base_addr)) stored_eoa -= (shared->base_addr - shared->super_addr); else /* The superblock moved later in the file */ stored_eoa += (shared->super_addr - shared->base_addr); shared->base_addr = shared->super_addr; } /* end if */ /* Compute super block checksum */ assert(sizeof(chksum) == sizeof(shared->super_chksum)); for (q = (uint8_t *)&chksum, chksum = 0, i = 0; i < fixed_size + variable_size; ++i) q[i % sizeof(shared->super_chksum)] ^= buf[i]; /* Set the super block checksum */ shared->super_chksum = chksum; /* Decode the optional driver information block */ if (H5F_addr_defined(shared->driver_addr)) { haddr_t drv_addr = shared->base_addr + shared->driver_addr; uint8_t dbuf[H5F_DRVINFOBLOCK_SIZE]; /* Local buffer */ if (H5FD_set_eoa(lf, drv_addr + 16) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, drv_addr, (size_t)16, dbuf) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read driver information block") p = dbuf; /* Version number */ if (HDF5_DRIVERINFO_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "bad driver information block version number") p += 3; /* reserved */ /* Driver info size */ UINT32DECODE(p, driver_size); /* Driver name and/or version */ HDstrncpy(driver_name, (const char *)p, (size_t)8); driver_name[8] = '\0'; p += 8; /* advance past name/version */ /* Read driver information and decode */ assert((driver_size + 16) <= sizeof(dbuf)); if (H5FD_set_eoa(lf, drv_addr + 16 + driver_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, drv_addr+16, driver_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read file driver information") if (H5FD_sb_decode(lf, driver_name, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to decode driver information") /* Compute driver info block checksum */ assert(sizeof(chksum) == sizeof(shared->drvr_chksum)); for (q = (uint8_t *)&chksum, chksum = 0, i = 0; i < (driver_size + 16); ++i) q[i % sizeof(shared->drvr_chksum)] ^= dbuf[i]; /* Set the driver info block checksum */ shared->drvr_chksum = chksum; } /* end if */