// ----------------------------------------------------------------------------
bool CGffRecord::IsParentOf(
CSeq_feat::TData::ESubtype maybe_parent,
CSeq_feat::TData::ESubtype maybe_child )
// ----------------------------------------------------------------------------
{
switch ( maybe_parent ) {
default:
return false;
case CSeq_feat::TData::eSubtype_10_signal:
case CSeq_feat::TData::eSubtype_35_signal:
case CSeq_feat::TData::eSubtype_3UTR:
case CSeq_feat::TData::eSubtype_5UTR:
return false;
case CSeq_feat::TData::eSubtype_operon:
switch ( maybe_child ) {
case CSeq_feat::TData::eSubtype_gene:
case CSeq_feat::TData::eSubtype_promoter:
return true;
default:
return IsParentOf( CSeq_feat::TData::eSubtype_gene, maybe_child ) ||
IsParentOf( CSeq_feat::TData::eSubtype_promoter, maybe_child );
}
case CSeq_feat::TData::eSubtype_gene:
switch ( maybe_child ) {
case CSeq_feat::TData::eSubtype_intron:
case CSeq_feat::TData::eSubtype_mRNA:
return true;
default:
return IsParentOf( CSeq_feat::TData::eSubtype_intron, maybe_child ) ||
IsParentOf( CSeq_feat::TData::eSubtype_mRNA, maybe_child );
}
case CSeq_feat::TData::eSubtype_cdregion:
switch ( maybe_child ) {
case CSeq_feat::TData::eSubtype_exon:
return true;
default:
return IsParentOf( CSeq_feat::TData::eSubtype_exon, maybe_child );
}
}
return false;
}
CString CServerPath::GetSubdirsOf(const CServerPath &path) const
{
ASSERT(IsParentOf(path));
CServerPath subdirs=path;
CString ret;
while(IsParentOf(subdirs))
{
CString tmp;
tmp.Format(_T(" %d %s"), subdirs.GetLastSegment().GetLength(),(LPCTSTR)subdirs.GetLastSegment());
ret += tmp;
subdirs = subdirs.GetParent();
}
ret.TrimLeft( _T(" ") );
return ret;
}
Uint32 cUIMenu::OnMessage( const cUIMessage * Msg ) {
switch ( Msg->Msg() ) {
case cUIMessage::MsgMouseUp:
{
if ( Msg->Sender()->Parent() == this && ( Msg->Flags() & EE_BUTTONS_LRM ) ) {
cUIEvent ItemEvent( Msg->Sender(), cUIEvent::EventOnItemClicked );
SendEvent( &ItemEvent );
}
return 1;
}
case cUIMessage::MsgFocusLoss:
{
cUIControl * FocusCtrl = cUIManager::instance()->FocusControl();
if ( this != FocusCtrl && !IsParentOf( FocusCtrl ) && !IsSubMenu( FocusCtrl ) ) {
OnComplexControlFocusLoss();
}
return 1;
}
}
return 0;
}
void Container::SetVisibility(bool fToValue)
{
// inherited
Element::SetVisibility(fToValue);
// remove focus from contained elements
if (!fToValue)
{
Dialog *pDlg = GetDlg();
if (pDlg)
{
Control *pFocus = pDlg->GetFocus();
if (pFocus)
{
if (IsParentOf(pFocus))
{
pDlg->SetFocus(NULL, false);
}
}
}
}
}
// ----------------------------------------------------------------------------
bool CGffRecord::AssignAttributesCore(
const CSeq_annot& annot,
const CSeq_feat& feature )
// ----------------------------------------------------------------------------
{
m_strAttributes = "";
// If feature ids are present then they are likely used to show parent/child
// relationships, via corresponding xrefs. Thus, any feature ids override
// gb ID tags (feature ids and ID tags should agree in the first place, but
// if not, feature ids must trump ID tags).
//
bool bIdAssigned = false;
if ( feature.CanGetId() ) {
const CSeq_feat::TId& id = feature.GetId();
string value = CGffRecord::FeatIdString( id );
AddAttribute( "ID", value );
bIdAssigned = true;
}
if ( feature.CanGetXref() ) {
const CSeq_feat::TXref& xref = feature.GetXref();
string value;
for ( size_t i=0; i < xref.size(); ++i ) {
// const CSeqFeatXref& ref = *xref[i];
if ( xref[i]->CanGetId() && xref[i]->CanGetData() ) {
const CSeqFeatXref::TId& id = xref[i]->GetId();
CSeq_feat::TData::ESubtype other_type = GetSubtypeOf( annot, id );
if ( ! IsParentOf( other_type, feature.GetData().GetSubtype() ) ) {
continue;
}
if ( ! value.empty() ) {
value += ",";
}
value += CGffRecord::FeatIdString( id );
}
}
if ( ! value.empty() ) {
AddAttribute( "Parent", value );
}
}
if ( feature.CanGetQual() ) {
const vector< CRef< CGb_qual > >& quals = feature.GetQual();
vector< CRef< CGb_qual > >::const_iterator it = quals.begin();
while ( it != quals.end() ) {
if ( (*it)->CanGetQual() && (*it)->CanGetVal() ) {
if ( (*it)->GetQual() == "ID" ) {
if ( ! bIdAssigned ) {
AddAttribute( "ID", (*it)->GetVal() );
}
}
if ( (*it)->GetQual() == "Name" ) {
AddAttribute( "Name", (*it)->GetVal() );
}
if ( (*it)->GetQual() == "Var_type" ) {
AddAttribute( "Var_type", (*it)->GetVal() );
}
}
++it;
}
}
return true;
}