// ===============
// = Constructor =
// ===============
BedMerge::BedMerge(string &bedFile, bool &numEntries, int &maxDistance, bool &forceStrand, bool &reportNames) {
_bedFile = bedFile;
_numEntries = numEntries;
_maxDistance = -1 * maxDistance;
_forceStrand = forceStrand;
_reportNames = reportNames;
_bed = new BedFile(bedFile);
if (_forceStrand == false)
MergeBed();
else
MergeBedStranded();
}
// ===============
// = Constructor =
// ===============
BedMerge::BedMerge(string &bedFile,
bool numEntries,
int maxDistance,
bool forceStrand,
bool reportNames,
bool reportScores,
const string &scoreOp) :
_bedFile(bedFile),
_numEntries(numEntries),
_forceStrand(forceStrand),
_reportNames(reportNames),
_reportScores(reportScores),
_scoreOp(scoreOp),
_maxDistance(maxDistance)
{
_bed = new BedFile(bedFile);
if (_forceStrand == false)
MergeBed();
else
MergeBedStranded();
}
