Teuchos::RCP<STK_Interface> SculptMeshFactory::buildUncommitedMesh(stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::SculptMeshFactory::buildUncomittedMesh()");
RCP<STK_Interface> mesh = rcp(new STK_Interface(3));
machRank_ = stk_classic::parallel_machine_rank(parallelMach);
machSize_ = stk_classic::parallel_machine_size(parallelMach);
procTuple_ = procRankToProcTuple(machRank_);
//if( machRank_ == 0 )
{
// call Sculptor
char diatom_file[1000];
writeDiatomFile( stlFileDir_, stlFileName_, diatom_file );
callSculptor( parallelMach, diatom_file );
// build meta information: blocks and side set setups
buildMetaData(parallelMach,*mesh);
mesh->addPeriodicBCs(periodicBCVec_);
}
// if( machRank_ == 0 )
// if(mesh->isWritable())
// mesh->writeToExodus("STKSculptMesh.exo");
return mesh;
}
Teuchos::RCP<STK_Interface> CubeTetMeshFactory::buildUncommitedMesh(stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::CubeTetMeshFactory::buildUncomittedMesh()");
RCP<STK_Interface> mesh = rcp(new STK_Interface(3));
machRank_ = stk_classic::parallel_machine_rank(parallelMach);
machSize_ = stk_classic::parallel_machine_size(parallelMach);
if(xProcs_==-1) {
// default x only decomposition
xProcs_ = machSize_;
yProcs_ = 1;
zProcs_ = 1;
}
TEUCHOS_TEST_FOR_EXCEPTION(int(machSize_)!=xProcs_*yProcs_*zProcs_,std::logic_error,
"Cannot build CubeTetMeshFactory, the product of \"X Procs\", \"Y Procs\", and \"Z Procs\""
" must equal the number of processors.");
procTuple_ = procRankToProcTuple(machRank_);
// build meta information: blocks and side set setups
buildMetaData(parallelMach,*mesh);
mesh->addPeriodicBCs(periodicBCVec_);
return mesh;
}
void
CustomMeshFactory::completeMeshConstruction(STK_Interface &mesh,
stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::CustomMeshFactory::completeMeshConstruction()");
if (not mesh.isInitialized())
mesh.initialize(parallelMach);
// add node and element information
buildElements(mesh);
// build edges and faces; fyi: addSides(mesh) builds only edges
mesh.buildSubcells();
mesh.buildLocalElementIDs();
// now that edges are built, side and node sets can be added
addSideSets(mesh);
// set solution fields
fillSolutionFieldData(mesh);
// calls Stk_MeshFactory::rebalance
//this->rebalance(mesh);
}
//! Build the mesh object
Teuchos::RCP<STK_Interface> CubeTetMeshFactory::buildMesh(stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::CubeTetMeshFactory::buildMesh()");
// build all meta data
RCP<STK_Interface> mesh = buildUncommitedMesh(parallelMach);
// commit meta data
mesh->initialize(parallelMach);
// build bulk data
completeMeshConstruction(*mesh,parallelMach);
return mesh;
}
//! Build the mesh object
Teuchos::RCP<STK_Interface> SculptMeshFactory::buildMesh(stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::SculptMeshFactory::buildMesh()");
RCP<STK_Interface> mesh = buildUncommitedMesh(parallelMach);
// commit meta data
mesh->initialize(parallelMach);
// build bulk data
completeMeshConstruction(*mesh,parallelMach);
// wrtie exodus file
//mesh->writeToExodus("STKSculptMesh.exo");
return mesh;
}
void SculptMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::SculptMeshFactory::completeMeshConstruction()");
if(not mesh.isInitialized())
mesh.initialize(parallelMach);
buildElements(parallelMach,mesh);
mesh.buildSubcells();
mesh.buildLocalElementIDs();
addSideSets(mesh);
addNodeSets(mesh);
this->rebalance(mesh);
}
Teuchos::RCP<STK_Interface>
CustomMeshFactory::buildUncommitedMesh(stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::CustomMeshFactory::buildUncomittedMesh()");
RCP<STK_Interface> mesh = rcp(new STK_Interface(3));
machRank_ = stk_classic::parallel_machine_rank(parallelMach);
machSize_ = stk_classic::parallel_machine_size(parallelMach);
// add blocks and side sets (global geometry setup)
buildMetaData(*mesh);
mesh->addPeriodicBCs(periodicBCVec_);
return mesh;
}
Teuchos::RCP<STK_Interface> LineMeshFactory::buildUncommitedMesh(stk::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::LineMeshFactory::buildUncomittedMesh()");
RCP<STK_Interface> mesh = rcp(new STK_Interface(1));
machRank_ = stk::parallel_machine_rank(parallelMach);
machSize_ = stk::parallel_machine_size(parallelMach);
procTuple_ = procRankToProcTuple(machRank_);
// build meta information: blocks and side set setups
buildMetaData(parallelMach,*mesh);
mesh->addPeriodicBCs(periodicBCVec_);
return mesh;
}
void CubeTetMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk_classic::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::CubeTetMeshFactory::completeMeshConstruction()");
if(not mesh.isInitialized())
mesh.initialize(parallelMach);
// add node and element information
buildElements(parallelMach,mesh);
// finish up the edges and faces
mesh.buildSubcells();
mesh.buildLocalElementIDs();
// now that edges are built, sidets can be added
addSideSets(mesh);
// calls Stk_MeshFactory::rebalance
this->rebalance(mesh);
}
void SquareQuadMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::ParallelMachine parallelMach) const
{
PANZER_FUNC_TIME_MONITOR("panzer::SquareQuadMeshFactory::completeMeshConstruction()");
if(not mesh.isInitialized())
mesh.initialize(parallelMach);
// add node and element information
buildElements(parallelMach,mesh);
// finish up the edges
#ifndef ENABLE_UNIFORM
mesh.buildSubcells();
#endif
mesh.buildLocalElementIDs();
// now that edges are built, sidsets can be added
#ifndef ENABLE_UNIFORM
addSideSets(mesh);
#endif
// add nodesets
addNodeSets(mesh);
}
void panzer::AssemblyEngine<EvalT>::
evaluate(const panzer::AssemblyEngineInArgs& in)
{
typedef LinearObjContainer LOC;
// make sure this container gets a dirichlet adjustment
in.ghostedContainer_->setRequiresDirichletAdjustment(true);
GlobalEvaluationDataContainer gedc;
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_gather("+PHX::typeAsString<EvalT>()+")");
in.fillGlobalEvaluationDataContainer(gedc);
gedc.initialize(); // make sure all ghosted data is ready to go
gedc.globalToGhost(LOC::X | LOC::DxDt);
// Push solution, x and dxdt into ghosted domain
m_lin_obj_factory->globalToGhostContainer(*in.container_,*in.ghostedContainer_,LOC::X | LOC::DxDt);
m_lin_obj_factory->beginFill(*in.ghostedContainer_);
}
// *********************
// Volumetric fill
// *********************
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_volume("+PHX::typeAsString<EvalT>()+")");
this->evaluateVolume(in);
}
// *********************
// BC fill
// *********************
// NOTE: We have to split neumann and dirichlet bcs since dirichlet
// bcs overwrite equations where neumann sum into equations. Make
// sure all neumann are done before dirichlet.
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_neumannbcs("+PHX::typeAsString<EvalT>()+")");
this->evaluateNeumannBCs(in);
}
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_interfacebcs("+PHX::typeAsString<EvalT>()+")");
this->evaluateInterfaceBCs(in);
}
// Dirchlet conditions require a global matrix
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_dirichletbcs("+PHX::typeAsString<EvalT>()+")");
this->evaluateDirichletBCs(in);
}
{
PANZER_FUNC_TIME_MONITOR("panzer::AssemblyEngine::evaluate_scatter("+PHX::typeAsString<EvalT>()+")");
m_lin_obj_factory->ghostToGlobalContainer(*in.ghostedContainer_,*in.container_,LOC::F | LOC::Mat);
m_lin_obj_factory->beginFill(*in.container_);
gedc.ghostToGlobal(LOC::F | LOC::Mat);
m_lin_obj_factory->endFill(*in.container_);
m_lin_obj_factory->endFill(*in.ghostedContainer_);
}
return;
}