SimpleFeature *SimpleFeature_shallowCopyImpl(SimpleFeature *sf) {
SimpleFeature *newSimpleFeature = SimpleFeature_new();
memcpy(newSimpleFeature,sf,sizeof(SimpleFeature));
return newSimpleFeature;
}
SeqFeature *SeqFeatureFactory_newFeature(ClassType type) {
void *feature;
switch (type) {
case CLASS_BASEALIGNFEATURE:
feature = BaseAlignFeature_new();
break;
case CLASS_DNADNAALIGNFEATURE:
feature = DNAAlignFeature_new();
break;
case CLASS_DNAPEPALIGNFEATURE:
feature = DNAPepAlignFeature_new();
break;
case CLASS_FEATUREPAIR:
feature = FeaturePair_new();
break;
case CLASS_PREDICTIONTRANSCRIPT:
feature = PredictionTranscript_new();
break;
case CLASS_SIMPLEFEATURE:
feature = SimpleFeature_new();
break;
case CLASS_SEQFEATURE:
feature = SeqFeature_new();
break;
case CLASS_EXON:
feature = Exon_new();
break;
case CLASS_TRANSCRIPT:
feature = Transcript_new();
break;
case CLASS_PREDICTIONEXON:
feature = PredictionExon_new();
break;
case CLASS_REPEATFEATURE:
feature = RepeatFeature_new();
break;
case CLASS_INTRONSUPPORTINGEVIDENCE:
fprintf(stderr,"!!!!!! ise new in seqfeaturefactory\n");
feature = IntronSupportingEvidence_new();
break;
default:
fprintf(stderr,"Error: Unknown feature type %s SeqFeatureFactory_newFeature\n",Class_findByType(type)->name);
exit(1);
}
return (SeqFeature *)feature;
}
