char *initTiff3DFile ( char *filename, unsigned int sz0, unsigned int sz1, unsigned int sz2, unsigned int sz3, int datatype ) {
//int initTiff3DFile ( char *filename, uint32 XSIZE, uint32 YSIZE, uint16 spp, uint16 Npages, int datatype){
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_START(TiffInitData)
#endif
uint32 XSIZE = sz0;
uint32 YSIZE = sz1;
uint16 Npages = sz2;
uint16 spp = sz3;
uint16 bpp=8 * datatype;
unsigned char *fakeData=new unsigned char[XSIZE * YSIZE];
int check;
if ( sz3 == 1 )
spp = sz3;
else if ( sz3 < 4 )
spp = 3;
else
return ((char *) "More than 3 channels in Tiff files.");
char *completeFilename = (char *) 0;
int fname_len = (int) strlen(filename);
char *suffix = strstr(filename,".tif");
while ( suffix && (fname_len - (suffix-filename) > 5) )
suffix = strstr(suffix+4,".tif");
//if ( (suffix != 0) && (fname_len - (suffix-filename) <= 5) ) { // a substring ".tif is already at the end of the filename
if ( suffix ) { // a substring ".tif is already at the very end of the filename
completeFilename = new char[fname_len+1];
strcpy(completeFilename,filename);
}
else {
completeFilename = new char[fname_len+4+1];
strcpy(completeFilename,filename);
strcat(completeFilename,".");
strcat(completeFilename,TIFF3D_SUFFIX);
}
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_STOP(TiffInitData, itm::CPU, itm::strprintf("generated fake data for 3D tiff \"%s\"", completeFilename))
TERAFLY_TIME_RESTART(TiffInitData)
#endif
TIFF *output;
output = TIFFOpen(completeFilename,"w");
if (!output) {
return ((char *) "Cannot open the file.");
}
check = TIFFSetField(output, TIFFTAG_IMAGEWIDTH, XSIZE);
if (!check) {
return ((char *) "Cannot set the image width.");
}
check = TIFFSetField(output, TIFFTAG_IMAGELENGTH, YSIZE);
if (!check) {
return ((char *) "Cannot set the image width.");
}
check = TIFFSetField(output, TIFFTAG_BITSPERSAMPLE, bpp);
if (!check) {
return ((char *) "Cannot set the image width.");
}
check = TIFFSetField(output, TIFFTAG_SAMPLESPERPIXEL, spp);
if (!check) {
return ((char *) "Cannot set the image width.");
}
check = TIFFSetField(output, TIFFTAG_ROWSPERSTRIP, YSIZE); // one page per strip
if (!check) {
return ((char *) "Cannot set the image height.");
}
check = TIFFSetField(output, TIFFTAG_COMPRESSION, COMPRESSION_LZW);
if (!check) {
return ((char *) "Cannot set the compression tag.");
}
check = TIFFSetField(output, TIFFTAG_PLANARCONFIG,PLANARCONFIG_CONTIG);
if (!check) {
return ((char *) "Cannot set the planarconfig tag.");
}
if ( spp == 1 )
check = TIFFSetField(output, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_MINISBLACK);
else // spp == 3
check = TIFFSetField(output, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_RGB);
if (!check) {
return ((char *) "Cannot set the photometric tag.");
}
/* We are writing single page of the multipage file */
check = TIFFSetField(output, TIFFTAG_SUBFILETYPE, FILETYPE_PAGE);
if (!check) {
return ((char *) "Cannot set the subfiletype tag.");
}
check = TIFFSetField(output, TIFFTAG_PAGENUMBER, 0, Npages);
if (!check) {
return ((char *) "Cannot set the page number.");
}
check = (int)TIFFWriteEncodedStrip(output, 0, fakeData, XSIZE * YSIZE);
if (!check) {
return ((char *) "Cannot write encoded strip to file.");
}
delete[] fakeData;
delete []completeFilename;
check = TIFFWriteDirectory(output);
if (!check) {
return ((char *) "Cannot write a new directory.");
}
TIFFClose(output);
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_STOP(TiffInitData, itm::IO, itm::strprintf("written initialized 3D tiff \"%s\"", completeFilename))
#endif
return (char *) 0;
}
char *initTiff3DFile ( char *filename, unsigned int sz0, unsigned int sz1, unsigned int sz2, unsigned int sz3, int datatype ) {
//int initTiff3DFile ( char *filename, uint32 XSIZE, uint32 YSIZE, uint16 spp, uint16 Npages, int datatype){
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_START(TiffInitData)
#endif
uint32 XSIZE = sz0;
uint32 YSIZE = sz1;
uint16 Npages = sz2;
uint16 spp = sz3;
uint16 bpp=8 * datatype;
unsigned char *fakeData=new unsigned char[XSIZE * YSIZE * spp * (bpp/8)];
int check;
if ( sz3 == 1 )
spp = sz3;
else if ( sz3 < 4 )
spp = 3;
else
return ((char *) "More than 3 channels in Tiff files.");
char *completeFilename = (char *) 0;
int fname_len = (int) strlen(filename);
char *suffix = strstr(filename,".tif");
while ( suffix && (fname_len - (suffix-filename) > 5) )
suffix = strstr(suffix+4,".tif");
//if ( (suffix != 0) && (fname_len - (suffix-filename) <= 5) ) { // a substring ".tif is already at the end of the filename
if ( suffix ) { // a substring ".tif is already at the very end of the filename
completeFilename = new char[fname_len+1];
strcpy(completeFilename,filename);
}
else {
completeFilename = new char[fname_len+4+1];
strcpy(completeFilename,filename);
strcat(completeFilename,".");
strcat(completeFilename,TIFF3D_SUFFIX);
}
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_STOP(TiffInitData, tf::CPU, tf::strprintf("generated fake data for 3D tiff \"%s\"", completeFilename))
TERAFLY_TIME_RESTART(TiffInitData)
#endif
//disable warning and error handlers to avoid messages on unrecognized tags
TIFFSetWarningHandler(0);
TIFFSetErrorHandler(0);
TIFF *output;
output = TIFFOpen(completeFilename,"w");
if (!output) {
return ((char *) "Cannot open the file.");
}
check = TIFFSetField(output, TIFFTAG_IMAGEWIDTH, XSIZE);
if (!check) {
return ((char *) "Cannot set the image width.");
}
check = TIFFSetField(output, TIFFTAG_IMAGELENGTH, YSIZE);
if (!check) {
return ((char *) "Cannot set the image height.");
}
check = TIFFSetField(output, TIFFTAG_BITSPERSAMPLE, bpp);
if (!check) {
return ((char *) "Cannot set the image bit per sample.");
}
check = TIFFSetField(output, TIFFTAG_SAMPLESPERPIXEL, spp);
if (!check) {
return ((char *) "Cannot set the image sample per pixel.");
}
check = TIFFSetField(output, TIFFTAG_ROWSPERSTRIP, (rowsPerStrip == -1) ? YSIZE : rowsPerStrip);
if (!check) {
return ((char *) "Cannot set the image rows per strip.");
}
check = TIFFSetField(output, TIFFTAG_ORIENTATION, ORIENTATION_TOPLEFT);
if (!check) {
return ((char *) "Cannot set the image orientation.");
}
check = TIFFSetField(output, TIFFTAG_COMPRESSION, COMPRESSION_LZW);
if (!check) {
return ((char *) "Cannot set the compression tag.");
}
check = TIFFSetField(output, TIFFTAG_PLANARCONFIG,PLANARCONFIG_CONTIG);
if (!check) {
return ((char *) "Cannot set the planarconfig tag.");
}
if ( spp == 1 )
check = TIFFSetField(output, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_MINISBLACK);
else // spp == 3
check = TIFFSetField(output, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_RGB);
if (!check) {
return ((char *) "Cannot set the photometric tag.");
}
/* We are writing single page of the multipage file */
check = TIFFSetField(output, TIFFTAG_SUBFILETYPE, FILETYPE_PAGE);
if (!check) {
return ((char *) "Cannot set the subfiletype tag.");
}
check = TIFFSetField(output, TIFFTAG_PAGENUMBER, 0, Npages);
if (!check) {
return ((char *) "Cannot set the page number.");
}
check = (int)TIFFWriteEncodedStrip(output, 0, fakeData, XSIZE * YSIZE);
if (!check) {
return ((char *) "Cannot write encoded strip to file.");
}
if ( rowsPerStrip == -1 )
TIFFWriteEncodedStrip(output, 0, fakeData, XSIZE * YSIZE * spp * (bpp/8));
else {
int check,StripsPerImage,LastStripSize;
uint32 rps = rowsPerStrip;
unsigned char *buf = fakeData;
StripsPerImage = (YSIZE + rps - 1) / rps;
LastStripSize = YSIZE % rps;
if (LastStripSize==0)
LastStripSize=rps;
for (int i=0; i < StripsPerImage-1; i++){
//if (comp==1) {
// TIFFReadRawStrip(input, i, buf, spp * rps * img_width * (bpp/8));
// buf = buf + spp * rps * img_width * (bpp/8);
//}
//else{
TIFFWriteEncodedStrip(output, i, buf, spp * rps * XSIZE * (bpp/8));
buf = buf + spp * rps * XSIZE * (bpp/8);
//}
}
//if (comp==1) {
// TIFFReadRawStrip(input, StripsPerImage-1, buf, spp * LastStripSize * img_width * (bpp/8));
//}
//else{
TIFFWriteEncodedStrip(output, StripsPerImage-1, buf, spp * LastStripSize * XSIZE * (bpp/8));
//}
buf = buf + spp * LastStripSize * XSIZE * (bpp/8);
}
delete[] fakeData;
delete []completeFilename;
check = TIFFWriteDirectory(output);
if (!check) {
return ((char *) "Cannot write a new directory.");
}
TIFFClose(output);
// 2015-01-30. Alessandro. @ADDED performance (time) measurement in all most time-consuming methods.
#ifdef _VAA3D_TERAFLY_PLUGIN_MODE
TERAFLY_TIME_STOP(TiffInitData, tf::IO, tf::strprintf("written initialized 3D tiff \"%s\"", completeFilename))
#endif
return (char *) 0;
}
