double Vector_getStandardDeviation (Vector me, double xmin, double xmax, long ilevel) {
if (xmax <= xmin) { xmin = my xmin; xmax = my xmax; }
long imin, imax, n = Sampled_getWindowSamples (me, xmin, xmax, & imin, & imax);
if (n < 2) return NUMundefined;
if (ilevel == Vector_CHANNEL_AVERAGE) {
double sum2 = 0.0;
for (long channel = 1; channel <= my ny; channel ++) {
double mean = Vector_getMean (me, xmin, xmax, channel);
for (long i = imin; i <= imax; i ++) {
double diff = my z [channel] [i] - mean;
sum2 += diff * diff;
}
}
return sqrt (sum2 / (n * my ny - my ny)); // The number of constraints equals the number of channels,
// because from every channel its own mean was subtracted.
// Corollary: a two-channel mono sound will have the same stdev as the corresponding one-channel sound.
}
double mean = Vector_getMean (me, xmin, xmax, ilevel);
double sum2 = 0.0;
for (long i = imin; i <= imax; i ++) {
double diff = my z [ilevel] [i] - mean;
sum2 += diff * diff;
}
return sqrt (sum2 / (n - 1));
}
void ERPTier_subtractBaseline (ERPTier me, double tmin, double tmax) {
long numberOfEvents = my events -> size;
if (numberOfEvents < 1)
return; // nothing to do
ERPPoint firstEvent = my event (1);
long numberOfChannels = firstEvent -> erp -> ny;
long numberOfSamples = firstEvent -> erp -> nx;
for (long ievent = 1; ievent <= numberOfEvents; ievent ++) {
ERPPoint event = my event (ievent);
for (long ichannel = 1; ichannel <= numberOfChannels; ichannel ++) {
double mean = Vector_getMean (event -> erp, tmin, tmax, ichannel);
double *channel = event -> erp -> z [ichannel];
for (long isample = 1; isample <= numberOfSamples; isample ++) {
channel [isample] -= mean;
}
}
}
}
void structERPWindow :: v_drawSelectionViewer () {
ERP erp = (ERP) data;
Graphics_setWindow (d_graphics, -1.1, 1.1, -1.01, 1.19);
Graphics_setGrey (d_graphics, 0.85);
Graphics_fillRectangle (d_graphics, -1.1, 1.1, -1.01, 1.19);
Graphics_setColour (d_graphics, Graphics_BLACK);
long numberOfDrawableChannels =
erp -> ny >= 64 && Melder_wcsequ (erp -> d_channelNames [64], L"O2") ? 64 :
erp -> ny >= 32 && Melder_wcsequ (erp -> d_channelNames [32], L"Cz") ? 32 :
0;
BiosemiLocationData *biosemiLocationData = numberOfDrawableChannels == 64 ? biosemiCapCoordinates64 : numberOfDrawableChannels == 32 ? biosemiCapCoordinates32 : 0;
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
double inclination = (double) biosemiLocationData [ichan]. inclination;
double azimuth = (double) biosemiLocationData [ichan]. azimuth;
bool rightHemisphere = inclination >= 0.0;
double r = fabs (inclination / 115.0);
double theta = rightHemisphere ? azimuth * (NUMpi / 180.0) : (azimuth + 180.0) * (NUMpi / 180.0);
biosemiLocationData [ichan]. topX = r * cos (theta);
biosemiLocationData [ichan]. topY = r * sin (theta);
}
long n = 201;
double d = 2.0 / (n - 1);
autoNUMvector <double> mean (1, numberOfDrawableChannels);
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
mean [ichan] =
d_startSelection == d_endSelection ?
Sampled_getValueAtX (erp, d_startSelection, ichan, 0, true) :
Vector_getMean (erp, d_startSelection, d_endSelection, ichan);
}
autoNUMmatrix <double> image (1, n, 1, n);
for (long irow = 1; irow <= n; irow ++) {
double y = -1.0 + (irow - 1) * d;
for (long icol = 1; icol <= n; icol ++) {
double x = -1.0 + (icol - 1) * d;
if (x * x + y * y <= 1.0) {
double value = NUMundefined, sum = 0.0, weight = 0.0;
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
double dx = x - biosemiLocationData [ichan]. topX;
double dy = y - biosemiLocationData [ichan]. topY;
double distance = sqrt (dx * dx + dy * dy);
if (distance < 1e-12) {
value = mean [ichan];
break;
}
distance = distance * distance * distance * distance * distance * distance;
sum += mean [ichan] / distance;
weight += 1.0 / distance;
}
if (value == NUMundefined)
value = ( sum == 0.0 ? 0.0 : sum / weight );
image [irow] [icol] = value;
}
}
}
double minimum = 0.0, maximum = 0.0;
for (long irow = 1; irow <= n; irow ++) {
for (long icol = 1; icol <= n; icol ++) {
double value = image [irow] [icol];
if (value < minimum) minimum = value;
else if (value > maximum) maximum = value;
}
}
double absoluteExtremum = - minimum > maximum ? - minimum : maximum;
if (d_sound_scalingStrategy == kTimeSoundEditor_scalingStrategy_FIXED_RANGE) {
minimum = d_sound_scaling_minimum;
maximum = d_sound_scaling_maximum;
} else if (d_sound_scalingStrategy == kTimeSoundEditor_scalingStrategy_FIXED_HEIGHT) {
double mean = 0.5 * (minimum + maximum);
minimum = mean - 0.5 * d_sound_scaling_height;
maximum = mean + 0.5 * d_sound_scaling_height;
} else {
minimum = - absoluteExtremum;
maximum = absoluteExtremum;
}
for (long irow = 1; irow <= n; irow ++) {
double y = -1.0 + (irow - 1) * d;
for (long icol = 1; icol <= n; icol ++) {
double x = -1.0 + (icol - 1) * d;
if (x * x + y * y > 1.0) {
image [irow] [icol] = minimum + 0.1875 * (maximum - minimum); // -0.625 * absoluteExtremum;
}
}
}
Graphics_image (d_graphics, image.peek(), 1, n, -1.0-0.5/n, 1.0+0.5/n, 1, n, -1.0-0.5/n, 1.0+0.5/n, minimum, maximum);
Graphics_setLineWidth (d_graphics, 2.0);
/*
* Nose.
*/
Graphics_setGrey (d_graphics, 0.5);
{// scope
double x [3] = { -0.08, 0.0, 0.08 }, y [3] = { 0.99, 1.18, 0.99 };
Graphics_fillArea (d_graphics, 3, x, y);
}
Graphics_setColour (d_graphics, Graphics_BLACK);
Graphics_line (d_graphics, -0.08, 0.99, 0.0, 1.18);
Graphics_line (d_graphics, 0.08, 0.99, 0.0, 1.18);
/*
* Ears.
*/
Graphics_setGrey (d_graphics, 0.5);
Graphics_fillRectangle (d_graphics, -1.09, -1.00, -0.08, 0.08);
Graphics_fillRectangle (d_graphics, 1.09, 1.00, -0.08, 0.08);
Graphics_setColour (d_graphics, Graphics_BLACK);
Graphics_line (d_graphics, -0.99, 0.08, -1.09, 0.08);
Graphics_line (d_graphics, -1.09, 0.08, -1.09, -0.08);
Graphics_line (d_graphics, -1.09, -0.08, -0.99, -0.08);
Graphics_line (d_graphics, 0.99, 0.08, 1.09, 0.08);
Graphics_line (d_graphics, 1.09, 0.08, 1.09, -0.08);
Graphics_line (d_graphics, 1.09, -0.08, 0.99, -0.08);
/*
* Scalp.
*/
Graphics_ellipse (d_graphics, -1.0, 1.0, -1.0, 1.0);
Graphics_setLineWidth (d_graphics, 1.0);
}
void structERP :: f_drawScalp (Graphics graphics, double tmin, double tmax, double vmin, double vmax, bool garnish) {
Graphics_setInner (graphics);
Graphics_setWindow (graphics, -1.0, 1.0, -1.0, 1.0);
//Graphics_setGrey (graphics, 1.0);
//Graphics_fillRectangle (graphics, -1.1, 1.1, -1.01, 1.19);
//Graphics_setColour (graphics, Graphics_BLACK);
long numberOfDrawableChannels =
this -> ny >= 64 && Melder_wcsequ (this -> d_channelNames [64], L"O2") ? 64 :
this -> ny >= 32 && Melder_wcsequ (this -> d_channelNames [32], L"Cz") ? 32 :
0;
BiosemiLocationData *biosemiLocationData = numberOfDrawableChannels == 64 ? biosemiCapCoordinates64 : numberOfDrawableChannels == 32 ? biosemiCapCoordinates32 : 0;
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
double inclination = (double) biosemiLocationData [ichan]. inclination;
double azimuth = (double) biosemiLocationData [ichan]. azimuth;
bool rightHemisphere = inclination >= 0.0;
double r = fabs (inclination / 115.0);
double theta = rightHemisphere ? azimuth * (NUMpi / 180.0) : (azimuth + 180.0) * (NUMpi / 180.0);
biosemiLocationData [ichan]. topX = r * cos (theta);
biosemiLocationData [ichan]. topY = r * sin (theta);
}
long n = 201;
double d = 2.0 / (n - 1);
autoNUMvector <double> mean (1, numberOfDrawableChannels);
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
mean [ichan] = tmin == tmax ?
Sampled_getValueAtX (this, tmin, ichan, 0, true) :
Vector_getMean (this, tmin, tmax, ichan);
}
autoNUMmatrix <double> image (1, n, 1, n);
for (long irow = 1; irow <= n; irow ++) {
double y = -1.0 + (irow - 1) * d;
for (long icol = 1; icol <= n; icol ++) {
double x = -1.0 + (icol - 1) * d;
if (x * x + y * y <= 1.0) {
double value = NUMundefined, sum = 0.0, weight = 0.0;
for (long ichan = 1; ichan <= numberOfDrawableChannels; ichan ++) {
double dx = x - biosemiLocationData [ichan]. topX;
double dy = y - biosemiLocationData [ichan]. topY;
double distance = sqrt (dx * dx + dy * dy);
if (distance < 1e-12) {
value = mean [ichan];
break;
}
distance = distance * distance * distance * distance * distance * distance;
sum += mean [ichan] / distance;
weight += 1.0 / distance;
}
if (value == NUMundefined)
value = ( sum == 0.0 ? 0.0 : sum / weight );
image [irow] [icol] = value;
}
}
}
for (long irow = 1; irow <= n; irow ++) {
double y = -1.0 + (irow - 1) * d;
for (long icol = 1; icol <= n; icol ++) {
double x = -1.0 + (icol - 1) * d;
if (x * x + y * y > 1.0) {
image [irow] [icol] = vmin;
}
}
}
Graphics_image (graphics, image.peek(), 1, n, -1.0-0.5/n, 1.0+0.5/n, 1, n, -1.0-0.5/n, 1.0+0.5/n, vmin, vmax);
Graphics_setLineWidth (graphics, 2.0);
/*
* Nose.
*/
Graphics_setGrey (graphics, 0.5);
{// scope
double x [3] = { -0.08, 0.0, 0.08 }, y [3] = { 0.99, 1.18, 0.99 };
Graphics_fillArea (graphics, 3, x, y);
}
Graphics_setColour (graphics, Graphics_BLACK);
Graphics_line (graphics, -0.08, 0.99, 0.0, 1.18);
Graphics_line (graphics, 0.08, 0.99, 0.0, 1.18);
/*
* Ears.
*/
Graphics_setGrey (graphics, 0.5);
Graphics_fillRectangle (graphics, -1.09, -1.00, -0.08, 0.08);
Graphics_fillRectangle (graphics, 1.09, 1.00, -0.08, 0.08);
Graphics_setColour (graphics, Graphics_BLACK);
Graphics_line (graphics, -0.99, 0.08, -1.09, 0.08);
Graphics_line (graphics, -1.09, 0.08, -1.09, -0.08);
Graphics_line (graphics, -1.09, -0.08, -0.99, -0.08);
Graphics_line (graphics, 0.99, 0.08, 1.09, 0.08);
Graphics_line (graphics, 1.09, 0.08, 1.09, -0.08);
Graphics_line (graphics, 1.09, -0.08, 0.99, -0.08);
/*
* Scalp.
*/
Graphics_ellipse (graphics, -1.0, 1.0, -1.0, 1.0);
Graphics_setLineWidth (graphics, 1.0);
Graphics_unsetInner (graphics);
if (garnish) {
autoNUMmatrix <double> legend (1, n, 1, 2);
for (long irow = 1; irow <= n; irow ++) {
for (long icol = 1; icol <= 2; icol ++) {
legend [irow] [icol] = (irow - 1) / (n - 1.0);
}
}
Graphics_image (graphics, legend.peek(), 1, 2, 0.78, 0.98, 1, n, -0.8, +0.8, 0.0, 1.0);
Graphics_rectangle (graphics, 0.78, 0.98, -0.8, +0.8);
Graphics_setTextAlignment (graphics, Graphics_RIGHT, Graphics_TOP);
Graphics_text2 (graphics, 1.0, -0.8, Melder_double (vmin * 1e6), L" \\muV");
Graphics_setTextAlignment (graphics, Graphics_RIGHT, Graphics_BOTTOM);
Graphics_text2 (graphics, 1.0, +0.8, Melder_double (vmax * 1e6), L" \\muV");
}
}
double ERPTier_getMean (ERPTier me, long pointNumber, long channelNumber, double tmin, double tmax) {
if (pointNumber < 1 || pointNumber > my events -> size) return NUMundefined;
if (channelNumber < 1 || channelNumber > my numberOfChannels) return NUMundefined;
ERPPoint point = my event (pointNumber);
return Vector_getMean (point -> erp, tmin, tmax, channelNumber);
}
