{
return -1;
}
//some setup
int file_reader_fasta(FILE * fp, Sequence * seq, int max_read_length, boolean new_entry, boolean * full_entry){
long long ret;
int offset = 0;
if (new_entry == false){
offset = db_graph->kmer_size;
//die("new_entry must be true in hsi test function");
}
ret = read_sequence_from_fasta(fp, seq, max_read_length,new_entry,full_entry,offset);
return ret;
}
ReadingUtils* ru = alloc_reading_utils(10000, db_graph->kmer_size);
//init the dbNodes
int i;
BinaryKmer b;
binary_kmer_initialise_to_zero(&b);
dBNode dummy_node;
element_initialise(&dummy_node, &b, cmd_line->kmer_size);
for (i=0; i<10000; i++)
{
ru->array_nodes[i]=&dummy_node;
}
if ( (ru==NULL) )
{
return -1;
}
int into_colour=0;
return -1;
}
//some setup
int file_reader_fasta(FILE * fp, Sequence * seq, int max_read_length, boolean new_entry, boolean * full_entry){
long long ret;
int offset = 0;
if (new_entry == false){
offset = db_graph->kmer_size;
//die("new_entry must be true in hsi test function");
}
ret = read_sequence_from_fasta(fp,seq,max_read_length,new_entry,full_entry,offset);
return ret;
}
ReadingUtils* ru = alloc_reading_utils(MAX_LEN_GENE, db_graph->kmer_size);
//init the dbNodes, mostly to keep valgrind happy
int i;
BinaryKmer b;
binary_kmer_initialise_to_zero(&b);
dBNode dummy_node;
element_initialise(&dummy_node, &b, cmd_line->kmer_size);
for (i=0; i<MAX_LEN_GENE; i++)
{
ru->array_nodes[i]=&dummy_node;
}
VarOnBackground* tmp_vob = alloc_and_init_var_on_background();
GeneInfo* tmp_gi = alloc_and_init_gene_info();
