Пример #1
0
// Returns the proper integer chrom target (as is or through factor levels)
// Negative values should skip further treatments (level not found in factor)
int chromTarget(SEXP chrom, SEXP targetChrom) {
	int output;
	if(isFactor(chrom)) {
		// Convert 'targetChrom' to a character vector
		if(isFactor(targetChrom)) { targetChrom = PROTECT(asCharacterFactor(targetChrom));
		} else                    { targetChrom = PROTECT(coerceVector(targetChrom, STRSXP));
		}
		
		if(LENGTH(targetChrom) != 1 || STRING_ELT(targetChrom, 0) == NA_STRING) {
			error("As 'chrom' is factor, target 'chrom' must be a single non-NA character-coercible value");
		}
		
		// From character to integer position in the index (0+)
		SEXP levels = PROTECT(getAttrib(chrom, R_LevelsSymbol));
		for(int i = 0; i < LENGTH(levels); i++) {
			if(strcmp(CHAR(STRING_ELT(levels, i)), CHAR(STRING_ELT(targetChrom, 0))) == 0) {
				// Early exit when found
				output = i;
				UNPROTECT(2);
				return output;
			}
		}
		
		// Was not found in levels
		output = -1;
		UNPROTECT(2);
	} else {
		// Integer chrom
		targetChrom = PROTECT(coerceVector(targetChrom, INTSXP));
		if(LENGTH(targetChrom) != 1 || INTEGER(targetChrom)[0] == NA_INTEGER || INTEGER(targetChrom)[0] < 0) {
			error("As 'chrom' is integer, target 'chrom' must be a single non-NA integer-coercible strictly positive value");
		}
		
		// Position in the index (0+)
		output = INTEGER(targetChrom)[0] - 1;
		UNPROTECT(1);
	}
	return output;
}
Пример #2
0
SEXP fmelt(SEXP DT, SEXP id, SEXP measure, SEXP varfactor, SEXP valfactor, SEXP var_name, SEXP val_name, SEXP na_rm, SEXP drop_levels, SEXP print_out) {
    
    int i, j, k, nrow, ncol, protecti=0, lids=-1, lvalues=-1, totlen=0, counter=0, thislen=0;
    SEXP thiscol, ans, dtnames, ansnames, idcols, valuecols, levels, factorLangSxp;
    SEXP vars, target, idxkeep = R_NilValue, thisidx = R_NilValue;
    Rboolean isfactor=FALSE, isidentical=TRUE, narm = FALSE, droplevels=FALSE, verbose=FALSE;
    SEXPTYPE valtype=NILSXP;
    size_t size;

    if (TYPEOF(DT) != VECSXP) error("Input is not of type VECSXP, expected a data.table, data.frame or list");
    if (TYPEOF(valfactor) != LGLSXP) error("Argument 'value.factor' should be logical TRUE/FALSE");
    if (TYPEOF(varfactor) != LGLSXP) error("Argument 'variable.factor' should be logical TRUE/FALSE");
    if (TYPEOF(na_rm) != LGLSXP) error("Argument 'na.rm' should be logical TRUE/FALSE");
    if (LOGICAL(na_rm)[0] == TRUE) narm = TRUE;
    if (TYPEOF(print_out) != LGLSXP) error("Argument 'verbose' should be logical TRUE/FALSE");
    if (LOGICAL(print_out)[0] == TRUE) verbose = TRUE;
    // check for var and val names
    if (TYPEOF(var_name) != STRSXP || length(var_name) != 1) error("Argument 'variable.name' must be a character vector of length 1");
    if (TYPEOF(val_name) != STRSXP || length(val_name) != 1) error("Argument 'value.name' must be a character vector of length 1");

    // droplevels future feature request, maybe... should ask on data.table-help
    // if (!isLogical(drop_levels)) error("Argument 'drop.levels' should be logical TRUE/FALSE");
    // if (LOGICAL(drop_levels)[0] == TRUE) droplevels = TRUE;
    // if (droplevels && !narm) warning("Ignoring argument 'drop.levels'. 'drop.levels' should be set to remove any unused levels as a result of setting 'na.rm=TRUE'. Here there is nothing to do because 'na.rm=FALSE'");
    
    ncol = LENGTH(DT);
    nrow = length(VECTOR_ELT(DT, 0));
    if (ncol <= 0) {
        warning("ncol(data) is 0. Nothing to do, returning original data.table.");
        return(DT);
    }
    PROTECT(dtnames = getAttrib(DT, R_NamesSymbol)); protecti++;
    if (isNull(dtnames)) error("names(data) is NULL. Please report to data.table-help");
    
    vars = checkVars(DT, id, measure, verbose);
    PROTECT(idcols = VECTOR_ELT(vars, 0)); protecti++;
    PROTECT(valuecols = VECTOR_ELT(vars, 1)); protecti++; // <~~~ not protecting vars leads to  segfault (on big data)
    
    lids = length(idcols);
    lvalues = length(valuecols);
    
    // edgecase where lvalues = 0 and lids > 0
    if (lvalues == 0 && lids > 0) {
        if (verbose) Rprintf("length(measure.var) is 0. Edge case detected. Nothing to melt. Returning data.table with all 'id.vars' which are columns %s\n", CHAR(STRING_ELT(concat(dtnames, idcols), 0)));
        PROTECT(ansnames = allocVector(STRSXP, lids)); protecti++;
        PROTECT(ans = allocVector(VECSXP, lids)); protecti++;
        for (i=0; i<lids; i++) {
            SET_VECTOR_ELT(ans, i, VECTOR_ELT(DT, INTEGER(idcols)[i]-1));
            SET_STRING_ELT(ansnames, i, STRING_ELT(dtnames, INTEGER(idcols)[i]-1));
        }
        setAttrib(ans, R_NamesSymbol, ansnames);
        UNPROTECT(protecti);
        return(ans);
    }
    if (lvalues == 0 && lids == 0 && verbose)
        Rprintf("length(measure.var) and length(id.var) are both 0. Edge case detected. Nothing to melt.\n"); // <~~ don't think this will ever happen though with all the checks
    // set names for 'ans' - the output list
    PROTECT(ansnames = allocVector(STRSXP, lids+2)); protecti++;
    for (i=0; i<lids; i++) {
        SET_STRING_ELT(ansnames, i, STRING_ELT(dtnames, INTEGER(idcols)[i]-1));
    }
    SET_STRING_ELT(ansnames, lids, mkChar(CHAR(STRING_ELT(var_name, 0)))); // mkChar("variable")
    SET_STRING_ELT(ansnames, lids+1, mkChar(CHAR(STRING_ELT(val_name, 0)))); // mkChar("value")
    
    // get "value" column
    for (i=0; i<lvalues; i++) {
        thiscol = VECTOR_ELT(DT, INTEGER(valuecols)[i]-1);
        if (!isfactor && isFactor(thiscol)) isfactor = TRUE;
        if (TYPEOF(thiscol) > valtype) valtype = TYPEOF(thiscol);
    }
    if (isfactor && valtype != VECSXP) valtype = STRSXP;

    for (i=0; i<lvalues; i++) {
        thiscol = VECTOR_ELT(DT, INTEGER(valuecols)[i]-1);
        if (TYPEOF(thiscol) != valtype && isidentical) {
            if (!(isFactor(thiscol) && valtype == STRSXP)) {
                isidentical = FALSE; // for Date like column (not implemented for now)
                warning("All 'measure.vars are NOT of the SAME type. By order of hierarchy, the molten data value column will be of type '%s'. Therefore all measure variables that are not of type '%s' will be coerced to. Check the DETAILS section of ?melt.data.table for more on coercion.\n", type2char(valtype), type2char(valtype));
                break;
            }
        }
    }

    if (valtype == VECSXP && narm) {
        narm = FALSE;
        if (verbose) Rprintf("The molten data value type is a list. 'na.rm=TRUE' is therefore ignored.\n");
    }
    if (narm) {
        PROTECT(idxkeep = allocVector(VECSXP, lvalues)); protecti++;
        for (i=0; i<lvalues; i++) {
            SET_VECTOR_ELT(idxkeep, i, which_notNA(VECTOR_ELT(DT, INTEGER(valuecols)[i]-1)));
            totlen += length(VECTOR_ELT(idxkeep, i));
        }
    } else 
        totlen = nrow * lvalues;
    
    PROTECT(ans = allocVector(VECSXP, lids + 2)); protecti++;
    target = PROTECT(allocVector(valtype, totlen));
    for (i=0; i<lvalues; i++) {
        thiscol = VECTOR_ELT(DT, INTEGER(valuecols)[i]-1);
        if (isFactor(thiscol))
            thiscol = asCharacterFactor(thiscol);
        if (TYPEOF(thiscol) != valtype && !isFactor(thiscol)) {
            // thiscol = valtype == STRSXP ? PROTECT(coerce_to_char(thiscol, R_GlobalEnv)) : PROTECT(coerceVector(thiscol, valtype));
            // protecti++; // for now, no preserving of class attributes
            thiscol = PROTECT(coerceVector(thiscol, valtype)); protecti++;
        }
        size = SIZEOF(thiscol);
        if (narm) {
            thisidx = VECTOR_ELT(idxkeep, i);
            thislen = length(thisidx);
        }
        switch(valtype) {
            case VECSXP :
            if (narm) {
                for (j=0; j<thislen; j++)
                    SET_VECTOR_ELT(target, counter + j, VECTOR_ELT(thiscol, INTEGER(thisidx)[j]-1));
            } else {
                for (j=0; j<nrow; j++) SET_VECTOR_ELT(target, i*nrow + j, VECTOR_ELT(thiscol, j));
            }
            break;
            case STRSXP :
            if (narm) {
                for (j=0; j<thislen; j++)
                    SET_STRING_ELT(target, counter + j, STRING_ELT(thiscol, INTEGER(thisidx)[j]-1));
            } else {
                for (j=0; j<nrow; j++) SET_STRING_ELT(target, i*nrow + j, STRING_ELT(thiscol, j));
            }
            break;
            case REALSXP : 
            if (narm) {
                for (j=0; j<thislen; j++)
                    REAL(target)[counter + j] = REAL(thiscol)[INTEGER(thisidx)[j]-1];
            } else {
                memcpy((char *)DATAPTR(target)+i*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            case INTSXP : 
            if (narm) {
                for (j=0; j<thislen; j++)
                    INTEGER(target)[counter + j] = INTEGER(thiscol)[INTEGER(thisidx)[j]-1];
            } else {
                memcpy((char *)DATAPTR(target)+i*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            case LGLSXP :
            if (narm) {
                for (j=0; j<thislen; j++)
                    LOGICAL(target)[counter + j] = LOGICAL(thiscol)[INTEGER(thisidx)[j]-1];
            } else {
                memcpy((char *)DATAPTR(target)+i*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            default : error("Unknown column type '%s' for column '%s' in 'data'", type2char(TYPEOF(thiscol)), CHAR(STRING_ELT(dtnames, INTEGER(valuecols)[i]-1)));
        }
        if (narm) counter += thislen;
        // if (isidentical && valtype != VECSXP) // for now, no preserving of class attributes
        //     setAttrib(target, R_ClassSymbol, getAttrib(VECTOR_ELT(DT, INTEGER(valuecols)[0]-1), R_ClassSymbol)); // for Date like column
    }
    // check for factor
    if (LOGICAL(valfactor)[0] == TRUE && valtype == VECSXP) warning("argument 'value.factor' ignored because 'value' column is a list\n");
    if (LOGICAL(valfactor)[0] == TRUE && valtype != VECSXP) {
        PROTECT(factorLangSxp = allocList(2));
        SET_TYPEOF(factorLangSxp, LANGSXP);
        SETCAR(factorLangSxp, install("factor"));
        SETCAR(CDR(factorLangSxp), target);
        SET_VECTOR_ELT(ans, lids+1, eval(factorLangSxp, R_GlobalEnv)); // last column
        UNPROTECT(1); // factorLangSxp
    } else 
        SET_VECTOR_ELT(ans, lids+1, target);    
    UNPROTECT(1); // target
    
    // get "variable" column
    counter = 0, i=0;
    target = PROTECT(allocVector(INTSXP, totlen));
     for (j=0; j<lvalues; j++) {
        if (narm) {
            thislen = length(VECTOR_ELT(idxkeep, j));
            for (k=0; k<thislen; k++)
                INTEGER(target)[counter + k] = i+1;
            counter += thislen;
            if (thislen > 0 || !droplevels) i++;
        } else {
            for (k=0; k<nrow; k++)
                INTEGER(target)[nrow*j + k] = j+1;
        }
    }
    setAttrib(target, R_ClassSymbol, mkString("factor"));
    if (narm && droplevels) {
        counter = 0;
        for (j=0; j<lvalues; j++) {
            if (length(VECTOR_ELT(idxkeep, j)) > 0) counter++;
        }
    } else counter = lvalues;
    levels = PROTECT(allocVector(STRSXP, counter));
    i = 0;
    for (j=0; j<lvalues; j++) {
        if (narm && droplevels) {
            if (length(VECTOR_ELT(idxkeep, j)) > 0)
                SET_STRING_ELT(levels, i++, STRING_ELT(dtnames, INTEGER(valuecols)[j]-1));
        } else 
            SET_STRING_ELT(levels, j, STRING_ELT(dtnames, INTEGER(valuecols)[j]-1));
    }
    setAttrib(target, R_LevelsSymbol, levels);
    UNPROTECT(1); // levels
    if (LOGICAL(varfactor)[0] == FALSE)
        target = asCharacterFactor(target);
    SET_VECTOR_ELT(ans, lids, target);
    UNPROTECT(1); // target
    
    // generate idcols (left part)
    for (i=0; i<lids; i++) {
        counter = 0;
        thiscol = VECTOR_ELT(DT, INTEGER(idcols)[i]-1);
        size = SIZEOF(thiscol);
        target = PROTECT(allocVector(TYPEOF(thiscol), totlen)); 
        switch(TYPEOF(thiscol)) {
            case REALSXP :
            if (narm) {
                for (j=0; j<lvalues; j++) {
                    thisidx = PROTECT(VECTOR_ELT(idxkeep, j));
                    thislen = length(thisidx);
                    for (k=0; k<thislen; k++)
                        REAL(target)[counter + k] = REAL(thiscol)[INTEGER(thisidx)[k]-1];
                    counter += thislen;
                    UNPROTECT(1); // thisidx
                } 
            } else { 
                for (j=0; j<lvalues; j++)
                    memcpy((char *)DATAPTR(target)+j*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            case INTSXP :
            if (narm) {
                for (j=0; j<lvalues; j++) {
                    thisidx = PROTECT(VECTOR_ELT(idxkeep, j));
                    thislen = length(thisidx);
                    for (k=0; k<thislen; k++)
                        INTEGER(target)[counter + k] = INTEGER(thiscol)[INTEGER(thisidx)[k]-1];
                    counter += thislen;
                    UNPROTECT(1); // thisidx
                } 
            } else {
                for (j=0; j<lvalues; j++)
                    memcpy((char *)DATAPTR(target)+j*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            case LGLSXP :
            if (narm) {
                for (j=0; j<lvalues; j++) {
                    thisidx = PROTECT(VECTOR_ELT(idxkeep, j));
                    thislen = length(thisidx);
                    for (k=0; k<thislen; k++)
                        LOGICAL(target)[counter + k] = LOGICAL(thiscol)[INTEGER(thisidx)[k]-1];
                    counter += thislen;
                    UNPROTECT(1); // thisidx
                } 
            } else {
                for (j=0; j<lvalues; j++)
                    memcpy((char *)DATAPTR(target)+j*nrow*size, (char *)DATAPTR(thiscol), nrow*size);
            }
            break;
            case STRSXP :
            if (narm) {
                for (j=0; j<lvalues; j++) {
                    thisidx = PROTECT(VECTOR_ELT(idxkeep, j));
                    thislen = length(thisidx);
                    for (k=0; k<thislen; k++)
                        SET_STRING_ELT(target, counter + k, STRING_ELT(thiscol, INTEGER(thisidx)[k]-1));
                    counter += thislen;
                    UNPROTECT(1); // thisidx
                } 
            } else {
                // SET_STRING_ELT for j=0 and memcpy for j>0, WHY?
                // From assign.c's memcrecycle - only one SET_STRING_ELT per RHS item is needed to set generations (overhead)
                for (k=0; k<nrow; k++) SET_STRING_ELT(target, k, STRING_ELT(thiscol, k));
                for (j=1; j<lvalues; j++)
                    memcpy((char *)DATAPTR(target)+j*nrow*size, (char *)DATAPTR(target), nrow*size);
            }
            break;
            case VECSXP :
            for (j=0; j<lvalues; j++) {
                for (k=0; k<nrow; k++) {
                    SET_VECTOR_ELT(target, j*nrow + k, VECTOR_ELT(thiscol, k));
                }
            }
            break;
            default : error("Unknown column type '%s' for column '%s' in 'data'", type2char(TYPEOF(thiscol)), CHAR(STRING_ELT(dtnames, INTEGER(idcols)[i]-1)));
        }
        copyMostAttrib(thiscol, target); // all but names,dim and dimnames. And if so, we want a copy here, not keepattr's SET_ATTRIB.
        SET_VECTOR_ELT(ans, i, target);
        UNPROTECT(1); // target
    }
                
    setAttrib(ans, R_NamesSymbol, ansnames);
    UNPROTECT(protecti);
    return(ans);
}
Пример #3
0
SEXP transpose(SEXP l, SEXP fill, SEXP ignoreArg) {

  R_len_t i, j, k=0, maxlen=0, zerolen=0, anslen;
  SEXP li, thisi, ans;
  SEXPTYPE type, maxtype=0;
  Rboolean coerce = FALSE;

  if (!isNewList(l))
    error("l must be a list.");
  if (!length(l))
    return(duplicate(l));
  if (!isLogical(ignoreArg) || LOGICAL(ignoreArg)[0] == NA_LOGICAL)
    error("ignore.empty should be logical TRUE/FALSE.");
  if (length(fill) != 1)
    error("fill must be NULL or length=1 vector.");
  R_len_t ln = LENGTH(l);
  Rboolean ignore = LOGICAL(ignoreArg)[0];

  // preprocessing
  R_len_t *len  = (R_len_t *)R_alloc(ln, sizeof(R_len_t));
  for (i=0; i<ln; i++) {
    li = VECTOR_ELT(l, i);
    if (!isVectorAtomic(li) && !isNull(li))
      error("Item %d of list input is not an atomic vector", i+1);
    len[i] = length(li);
    if (len[i] > maxlen)
      maxlen = len[i];
    zerolen += (len[i] == 0);
    if (isFactor(li)) {
      maxtype = STRSXP;
    } else {
      type = TYPEOF(li);
      if (type > maxtype)
        maxtype = type;
    }
  }
  // coerce fill to maxtype
  fill = PROTECT(coerceVector(fill, maxtype));

  // allocate 'ans'
  ans = PROTECT(allocVector(VECSXP, maxlen));
  anslen = (!ignore) ? ln : (ln - zerolen);
  for (i=0; i<maxlen; i++) {
    SET_VECTOR_ELT(ans, i, thisi=allocVector(maxtype, anslen) );
  }

  // transpose
  for (i=0; i<ln; i++) {
    if (ignore && !len[i]) continue;
    li = VECTOR_ELT(l, i);
    if (TYPEOF(li) != maxtype) {
      coerce = TRUE;
      if (!isFactor(li)) li = PROTECT(coerceVector(li, maxtype));
      else li = PROTECT(asCharacterFactor(li));
    }
    switch (maxtype) {
    case INTSXP :
      for (j=0; j<maxlen; j++) {
        thisi = VECTOR_ELT(ans, j);
        INTEGER(thisi)[k] = (j < len[i]) ? INTEGER(li)[j] : INTEGER(fill)[0];
      }
      break;
    case LGLSXP :
      for (j=0; j<maxlen; j++) {
        thisi = VECTOR_ELT(ans, j);
        LOGICAL(thisi)[k] = (j < len[i]) ? LOGICAL(li)[j] : LOGICAL(fill)[0];
      }
      break;
    case REALSXP :
      for (j=0; j<maxlen; j++) {
        thisi = VECTOR_ELT(ans, j);
        REAL(thisi)[k] = (j < len[i]) ? REAL(li)[j] : REAL(fill)[0];
      }
      break;
    case STRSXP :
      for (j=0; j<maxlen; j++) {
        thisi = VECTOR_ELT(ans, j);
        SET_STRING_ELT(thisi, k, (j < len[i]) ? STRING_ELT(li, j) : STRING_ELT(fill, 0));
      }
      break;
    default :
        error("Unsupported column type '%s'", type2char(maxtype));
    }
    if (coerce) {
      coerce = FALSE;
      UNPROTECT(1);
    }
    k++;
  }
  UNPROTECT(2);
  return(ans);
}
Пример #4
0
SEXP melt_dataframe( SEXP x, SEXP id_ind_, SEXP val_ind_, SEXP variable_name, SEXP value_name ) {
  
  if (length(x) == 0) {
    error("Can't melt a data.frame with 0 columns");
  }
  
  if (length(VECTOR_ELT(x, 0)) == 0) {
    error("Can't melt a data.frame with 0 rows");
  }
  
  int* id_ind = INTEGER(id_ind_);
  int* val_ind = INTEGER(val_ind_);
  
  int nColStack = length(id_ind_);
	int nColRep = length(val_ind_);
  
  int nRow = length( VECTOR_ELT(x, 0) );
	int out_nRow = nRow * nColRep;
	int out_nCol = nColStack + 2;
  
  char mt = max_type(x, val_ind_);
  if (mt > STRSXP) {
    error("Error: cannot melt data.frames w/ elements of type '%s'", CHAR(type2str(mt)));
  }
  
  if (diff_types(x, val_ind_)) {
    warning("Coercing type of 'value' variables to '%s'", CHAR(type2str(mt)));
  }
  
  SEXP out;
	PROTECT(out = allocVector( VECSXP, out_nCol ));

	// populate the value array
	SEXP value_SEXP;

#define HANDLE_CASE( RTYPE, CTYPE ) \
		case RTYPE: { \
      PROTECT( value_SEXP = allocVector( RTYPE, value_len ) ); \
      SEXP tmp; \
			for( int i=0; i < nColRep; ++i ) { \
        if (TYPEOF( VECTOR_ELT(x, val_ind[i]) ) != mt) { \
          tmp = PROTECT( coerceVector( VECTOR_ELT(x, val_ind[i]), mt ) ); \
        } else { \
          tmp = VECTOR_ELT(x, val_ind[i]); \
        } \
        memcpy( \
          (char*) DATAPTR(value_SEXP) + (i*nRow*sizeof(CTYPE)), \
          (char*) DATAPTR(tmp), \
          nRow * sizeof(CTYPE) \
        ); \
        if (TYPEOF( VECTOR_ELT(x, val_ind[i]) ) != mt) { \
          UNPROTECT(1); \
        } \
			} \
			break; \
		} \


	int value_len = nColRep * nRow;
	int value_type = mt;
  switch( value_type ) {
	HANDLE_CASE( INTSXP, int );
	HANDLE_CASE( REALSXP, double );
	HANDLE_CASE( LGLSXP, int );
	case STRSXP: {
    int counter = 0;
    SEXP* curr_str_vec_ptr;
    SEXP tmp;
		PROTECT( value_SEXP = allocVector( STRSXP, value_len ) );
		for( int i=0; i < nColRep; ++i ) {
#define curr_str_vec (VECTOR_ELT(x, val_ind[i]))
      if (TYPEOF(curr_str_vec) != STRSXP) {
        if (isFactor(curr_str_vec)) {
          PROTECT(tmp = asCharacterFactor(curr_str_vec));
        } else {
          PROTECT(tmp = coerceVector(curr_str_vec, STRSXP));
        }
        curr_str_vec_ptr = STRING_PTR(tmp);
      } else {
        curr_str_vec_ptr = STRING_PTR(curr_str_vec);
      }
#undef curr_str_vec
			SEXP* value_SEXP_ptr = STRING_PTR( value_SEXP );
			for( int j=0; j < nRow; ++j ) {
				value_SEXP_ptr[counter] = curr_str_vec_ptr[j];
				++counter;
			}
      if (TYPEOF( VECTOR_ELT(x, val_ind[i]) ) != mt) {
        UNPROTECT(1);
      }
		}
		break;
	}
	default:
		error("Unsupported RTYPE encountered");
	}
  
#undef HANDLE_CASE

	// generate the id variables, and assign them on generation
  // we need to convert factors if necessary
	for( int i=0; i < nColStack; ++i ) {
		SET_VECTOR_ELT( out, i, stack_vector( VECTOR_ELT( x, id_ind[i] ), nColRep ));
    if (isFactor( VECTOR_ELT(x, id_ind[i]) )) {
      setAttrib( VECTOR_ELT(out, i), R_ClassSymbol, mkString("factor") );
      setAttrib( VECTOR_ELT(out, i), R_LevelsSymbol, getAttrib( VECTOR_ELT(x, id_ind[i]), R_LevelsSymbol ) );
    }
	}

	// assign the names, values
	SET_VECTOR_ELT( out, nColStack, rep_each_char( getAttrib( x, R_NamesSymbol ), val_ind_, nRow ) );
  SET_VECTOR_ELT( out, nColStack+1, value_SEXP );
	UNPROTECT(1); // value_SEXP

	// set the row names
	SEXP row_names;
	PROTECT( row_names = allocVector(INTSXP, out_nRow) );
	int* row_names_ptr = INTEGER(row_names);
	for( int i=0; i < out_nRow; ++i ) {
		row_names_ptr[i] = i+1;
	}
	setAttrib( out, R_RowNamesSymbol, row_names );
	UNPROTECT(1); // row_names

	// set the class to data.frame
	setAttrib(out, R_ClassSymbol, mkString("data.frame"));

	// set the names
	SEXP names = getAttrib(x, R_NamesSymbol);
	SEXP names_out;
	PROTECT(names_out = allocVector( STRSXP, out_nCol ));
  
  SEXP* names_ptr = STRING_PTR(names);
  SEXP* names_out_ptr = STRING_PTR(names_out);
  for (int i=0; i < nColStack; ++i) {
    names_out_ptr[i] = names_ptr[ id_ind[i] ];
  }
	
  SET_STRING_ELT( names_out, nColStack, STRING_ELT(variable_name, 0) );
	SET_STRING_ELT( names_out, nColStack+1, STRING_ELT(value_name, 0) );
	setAttrib( out, R_NamesSymbol, names_out );
	UNPROTECT(1); // names_out

	UNPROTECT(1); // out
  return out;

}