void makeflow_summary_create(struct dag *d, const char *filename, const char *email_summary_to, timestamp_t runtime, timestamp_t time_completed, int argc, char *argv[], const char *dagfile, struct batch_queue *remote_queue, int abort_flag, int failed_flag )
{
char buffer[50];
FILE *summary_file = NULL;
FILE *summary_email = NULL;
if(filename)
summary_file = fopen(filename, "w");
if(email_summary_to) {
summary_email = popen("sendmail -t", "w");
fprintf(summary_email, "To: %s\n", email_summary_to);
timestamp_fmt(buffer, 50, "%c", time_completed);
fprintf(summary_email, "Subject: Makeflow Run Summary - %s \n", buffer);
}
int i;
for(i = 0; i < argc; i++)
summarize(summary_file, summary_email, "%s ", argv[i]);
summarize(summary_file, summary_email, "\n");
if(abort_flag)
summarize(summary_file, summary_email, "Workflow aborted:\t ");
else if(failed_flag)
summarize(summary_file, summary_email, "Workflow failed:\t ");
else
summarize(summary_file, summary_email, "Workflow completed:\t ");
timestamp_fmt(buffer, 50, "%c\n", time_completed);
summarize(summary_file, summary_email, "%s", buffer);
int seconds = runtime / 1000000;
int hours = seconds / 3600;
int minutes = (seconds - hours * 3600) / 60;
seconds = seconds - hours * 3600 - minutes * 60;
summarize(summary_file, summary_email, "Total runtime:\t\t %d:%02d:%02d\n", hours, minutes, seconds);
summarize(summary_file, summary_email, "Workflow file:\t\t %s\n", dagfile);
struct dag_node *n;
struct dag_file *f;
const char *fn;
dag_node_state_t state;
struct list *output_files;
output_files = list_create();
struct list *failed_tasks;
failed_tasks = list_create();
int total_tasks = itable_size(d->node_table);
int tasks_completed = 0;
int tasks_aborted = 0;
int tasks_unrun = 0;
for(n = d->nodes; n; n = n->next) {
state = n->state;
if(state == DAG_NODE_STATE_FAILED && !list_find(failed_tasks, (int (*)(void *, const void *)) string_equal, (void *) fn))
list_push_tail(failed_tasks, (void *) n->command);
else if(state == DAG_NODE_STATE_ABORTED)
tasks_aborted++;
else if(state == DAG_NODE_STATE_COMPLETE) {
tasks_completed++;
list_first_item(n->source_files);
while((f = list_next_item(n->source_files))) {
fn = f->filename;
if(!list_find(output_files, (int (*)(void *, const void *)) string_equal, (void *) fn))
list_push_tail(output_files, (void *) fn);
}
} else
tasks_unrun++;
}
summarize(summary_file, summary_email, "Number of tasks:\t %d\n", total_tasks);
summarize(summary_file, summary_email, "Completed tasks:\t %d/%d\n", tasks_completed, total_tasks);
if(tasks_aborted != 0)
summarize(summary_file, summary_email, "Aborted tasks:\t %d/%d\n", tasks_aborted, total_tasks);
if(tasks_unrun != 0)
summarize(summary_file, summary_email, "Tasks not run:\t\t %d/%d\n", tasks_unrun, total_tasks);
if(list_size(failed_tasks) > 0)
summarize(summary_file, summary_email, "Failed tasks:\t\t %d/%d\n", list_size(failed_tasks), total_tasks);
for(list_first_item(failed_tasks); (fn = list_next_item(failed_tasks)) != NULL;)
summarize(summary_file, summary_email, "\t%s\n", fn);
if(list_size(output_files) > 0) {
summarize(summary_file, summary_email, "Output files:\n");
for(list_first_item(output_files); (fn = list_next_item(output_files)) != NULL;) {
const char *size;
struct stat buf;
batch_fs_stat(remote_queue, fn, &buf);
size = string_metric(buf.st_size, -1, NULL);
summarize(summary_file, summary_email, "\t%s\t%s\n", fn, size);
}
}
list_free(output_files);
list_delete(output_files);
list_free(failed_tasks);
list_delete(failed_tasks);
if(filename) {
fprintf(stderr, "writing summary to %s.\n", filename);
fclose(summary_file);
}
if(email_summary_to) {
fprintf(stderr, "emailing summary to %s.\n", email_summary_to);
fclose(summary_email);
}
}
/** The clean_mode variable was added so that we could better print out error messages
* apply in the situation. Currently only used to silence node rerun checking.
*/
void makeflow_log_recover(struct dag *d, const char *filename, int verbose_mode, struct batch_queue *queue, makeflow_clean_depth clean_mode)
{
char *line, *name, file[MAX_BUFFER_SIZE];
int nodeid, state, jobid, file_state;
int first_run = 1;
struct dag_node *n;
struct dag_file *f;
struct stat buf;
timestamp_t previous_completion_time;
d->logfile = fopen(filename, "r");
if(d->logfile) {
int linenum = 0;
first_run = 0;
printf("recovering from log file %s...\n",filename);
while((line = get_line(d->logfile))) {
linenum++;
if(sscanf(line, "# %d %s %" SCNu64 "", &file_state, file, &previous_completion_time) == 3) {
f = dag_file_lookup_or_create(d, file);
f->state = file_state;
if(file_state == DAG_FILE_STATE_EXISTS){
d->completed_files += 1;
f->creation_logged = (time_t) (previous_completion_time / 1000000);
} else if(file_state == DAG_FILE_STATE_DELETE){
d->deleted_files += 1;
}
continue;
}
if(line[0] == '#')
continue;
if(sscanf(line, "%" SCNu64 " %d %d %d", &previous_completion_time, &nodeid, &state, &jobid) == 4) {
n = itable_lookup(d->node_table, nodeid);
if(n) {
n->state = state;
n->jobid = jobid;
/* Log timestamp is in microseconds, we need seconds for diff. */
n->previous_completion = (time_t) (previous_completion_time / 1000000);
continue;
}
}
fprintf(stderr, "makeflow: %s appears to be corrupted on line %d\n", filename, linenum);
exit(1);
}
fclose(d->logfile);
}
d->logfile = fopen(filename, "a");
if(!d->logfile) {
fprintf(stderr, "makeflow: couldn't open logfile %s: %s\n", filename, strerror(errno));
exit(1);
}
if(setvbuf(d->logfile, NULL, _IOLBF, BUFSIZ) != 0) {
fprintf(stderr, "makeflow: couldn't set line buffer on logfile %s: %s\n", filename, strerror(errno));
exit(1);
}
if(first_run && verbose_mode) {
struct dag_file *f;
struct dag_node *p;
for(n = d->nodes; n; n = n->next) {
/* Record node information to log */
fprintf(d->logfile, "# NODE\t%d\t%s\n", n->nodeid, n->command);
/* Record the node category to the log */
fprintf(d->logfile, "# CATEGORY\t%d\t%s\n", n->nodeid, n->category->label);
fprintf(d->logfile, "# SYMBOL\t%d\t%s\n", n->nodeid, n->category->label); /* also write the SYMBOL as alias of CATEGORY, deprecated. */
/* Record node parents to log */
fprintf(d->logfile, "# PARENTS\t%d", n->nodeid);
list_first_item(n->source_files);
while( (f = list_next_item(n->source_files)) ) {
p = f->created_by;
if(p)
fprintf(d->logfile, "\t%d", p->nodeid);
}
fputc('\n', d->logfile);
/* Record node inputs to log */
fprintf(d->logfile, "# SOURCES\t%d", n->nodeid);
list_first_item(n->source_files);
while( (f = list_next_item(n->source_files)) ) {
fprintf(d->logfile, "\t%s", f->filename);
}
fputc('\n', d->logfile);
/* Record node outputs to log */
fprintf(d->logfile, "# TARGETS\t%d", n->nodeid);
list_first_item(n->target_files);
while( (f = list_next_item(n->target_files)) ) {
fprintf(d->logfile, "\t%s", f->filename);
}
fputc('\n', d->logfile);
/* Record translated command to log */
fprintf(d->logfile, "# COMMAND\t%d\t%s\n", n->nodeid, n->command);
}
}
dag_count_states(d);
// Check for log consistency
if(!first_run) {
hash_table_firstkey(d->files);
while(hash_table_nextkey(d->files, &name, (void **) &f)) {
if(dag_file_should_exist(f) && !dag_file_is_source(f) && !(batch_fs_stat(queue, f->filename, &buf) >= 0)){
fprintf(stderr, "makeflow: %s is reported as existing, but does not exist.\n", f->filename);
makeflow_log_file_state_change(d, f, DAG_FILE_STATE_UNKNOWN);
continue;
}
if(S_ISDIR(buf.st_mode))
continue;
if(dag_file_should_exist(f) && !dag_file_is_source(f) && difftime(buf.st_mtime, f->creation_logged) > 0) {
fprintf(stderr, "makeflow: %s is reported as existing, but has been modified (%" SCNu64 " ,%" SCNu64 ").\n", f->filename, (uint64_t)buf.st_mtime, (uint64_t)f->creation_logged);
makeflow_clean_file(d, queue, f, 0);
makeflow_log_file_state_change(d, f, DAG_FILE_STATE_UNKNOWN);
}
}
}
int silent = 0;
if(clean_mode != MAKEFLOW_CLEAN_NONE)
silent = 1;
// Decide rerun tasks
if(!first_run) {
struct itable *rerun_table = itable_create(0);
for(n = d->nodes; n; n = n->next) {
makeflow_node_decide_rerun(rerun_table, d, n, silent);
}
itable_delete(rerun_table);
}
//Update file reference counts from nodes in log
for(n = d->nodes; n; n = n->next) {
if(n->state == DAG_NODE_STATE_COMPLETE)
{
struct dag_file *f;
list_first_item(n->source_files);
while((f = list_next_item(n->source_files)))
f->ref_count += -1;
}
}
}
