int main(int argc, char *argv[])
/* Process command line. */
{
pushCarefulMemHandler(200000000);
optionInit(&argc, argv, options);
if (argc != 3)
usage();
clDb = optionVal("db", clDb);
clOrg = optionVal("org", clOrg);
clSearch = optionVal("search", clSearch);
dataDir = optionVal("dataDir", dataDir);
clRepeat = optionInt("repeat", clRepeat);
/* Seed the random number generator. */
seed = optionInt("seed",time(NULL));
printf("seed=%d\n",seed);
srand(seed);
hgNearTest(argv[1], argv[2]);
carefulCheckHeap();
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
//pushCarefulMemHandler(200000000);
/* Set initial seed */
srand( (unsigned)time( NULL ) );
optionInit(&argc, argv, options);
if (argc != 2)
usage();
db = argv[1];
chr = optionVal("chr" , chr );
threshold = optionInt("threshold", threshold);
Verbose = optionInt("verbose" , Verbose );
snpValid();
carefulCheckHeap();
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
pushCarefulMemHandler(500000000);
optionInit(&argc, argv, options);
if (argc != 3)
usage();
clDb = optionVal("db", clDb);
clOrg = optionVal("org", clOrg);
clGroup = optionVal("group", clGroup);
clTrack = optionVal("track", clTrack);
clTable = optionVal("table", clTable);
clDbs = optionInt("dbs", clDbs);
clOrgs = optionInt("orgs", clOrgs);
clGroups = optionInt("groups", clGroups);
clTracks = optionInt("tracks", clTracks);
clTables = optionInt("tables", clTables);
appendLog = optionExists("appendLog");
if (clOrg != NULL)
clOrgs = BIGNUM;
hgTablesTest(argv[1], argv[2]);
carefulCheckHeap();
return 0;
}
void testOneTable(struct htmlPage *trackPage, char *org, char *db,
char *group, char *track, char *table)
/* Test stuff on one table if we haven't already tested this table. */
{
/* Why declared here and not globally? */
static struct hash *uniqHash = NULL;
char fullName[256];
if (uniqHash == NULL)
uniqHash = newHash(0);
safef(fullName, sizeof(fullName), "%s.%s", db, table);
if (!hashLookup(uniqHash, fullName))
{
struct htmlPage *tablePage;
struct htmlForm *mainForm;
hashAdd(uniqHash, fullName, NULL);
verbose(1, "Testing %s %s %s %s %s\n", naForNull(org), db, group, track, table);
tablePage = quickSubmit(trackPage, org, db, group,
track, table, "selectTable", hgtaTable, table);
if (!isObsolete(table) && tablePage != NULL)
{
if ((mainForm = htmlFormGet(tablePage, "mainForm")) == NULL)
{
qaStatusSoftError(tablesTestList->status,
"Couldn't get main form on tablePage for %s %s %s %s", db, group, track, table);
}
else
{
testSchema(tablePage, mainForm, org, db, group, track, table);
testSummaryStats(tablePage, mainForm, org, db, group, track, table);
if (outTypeAvailable(mainForm, "bed"))
{
if (outTypeAvailable(mainForm, "primaryTable"))
{
int rowCount;
rowCount = testAllFields(tablePage, mainForm, org, db, group, track, table);
testOneField(tablePage, mainForm, org, db, group, track, table, rowCount);
testOutSequence(tablePage, mainForm, org, db, group, track, table, rowCount);
testOutBed(tablePage, mainForm, org, db, group, track, table, rowCount);
testOutHyperlink(tablePage, mainForm, org, db, group, track, table, rowCount);
testOutGff(tablePage, mainForm, org, db, group, track, table);
if (rowCount > 0)
testOutCustomTrack(tablePage, mainForm, org, db, group, track, table);
}
}
else if (outTypeAvailable(mainForm, "primaryTable"))
{
/* If BED type is not available then the region will be ignored, and
* we'll end up scanning whole table. Make sure table is not huge
* before proceeding. */
if (tableSize(db, table) < 500000)
{
int rowCount;
rowCount = testAllFields(tablePage, mainForm, org, db, group, track, table);
testOneField(tablePage, mainForm, org, db, group, track, table, rowCount);
}
}
}
htmlPageFree(&tablePage);
}
carefulCheckHeap();
}
}
