void setupColumnPfam(struct column *col, char *parameters)
/* Setup Pfam column. */
{
setupColumnAssociation(col, parameters);
col->table = cloneString(parameters);
if ((col->protDb = columnSetting(col, "protDb", NULL)) == NULL)
errAbort("Missing required protDb field in column %s", col->name);
col->advFilter = pfamAdvFilter;
col->filterControls = pfamFilterControls;
}
void lookupAdvFilterControls(struct column *col, struct sqlConnection *conn)
/* Print out controls for advanced filter on lookup column. */
{
char *fileName = advFilterVal(col, "keyFile");
hPrintf("%s search (including * and ? wildcards):", col->shortLabel);
advFilterRemakeTextVar(col, "wild", 18);
hPrintf("<BR>\n");
hPrintf("Include if ");
advFilterAnyAllMenu(col, "logic", TRUE);
hPrintf("words in search term match.<BR>");
if (!columnSetting(col, "noKeys", NULL))
{
hPrintf("Limit to items (no wildcards) in list: ");
advFilterKeyPasteButton(col);
hPrintf(" ");
advFilterKeyUploadButton(col);
hPrintf(" ");
if (fileName != NULL)
{
if (fileExists(fileName))
{
int count = countQuotedWordsInFile(fileName);
advFilterKeyClearButton(col);
hPrintf("<BR>\n");
if (count == 1)
hPrintf("(There is currently 1 item in the list.)");
else
hPrintf("(There are currently %d items in the list.)", count);
}
else
{
cartRemove(cart, advFilterName(col, "keyFile"));
}
}
}
if (col->filterDropDown)
showListOfFilterValues(col, conn);
}
void setupColumnAssociation(struct column *col, char *parameters)
/* Set up a column that looks for an association table
* keyed by the geneId. */
{
if ((col->queryFull = columnSetting(col, "queryFull", NULL)) == NULL)
errAbort("Missing required queryFull field in column %s", col->name);
if ((col->queryOne = columnSetting(col, "queryOne", NULL)) == NULL)
errAbort("Missing required queryOne field in column %s", col->name);
if ((col->invQueryOne = columnSetting(col, "invQueryOne", NULL)) == NULL)
errAbort("Missing required invQueryOne field in column %s", col->name);
col->protKey = (columnSetting(col, "protKey", NULL) != NULL);
col->weedDupes = (columnSetting(col, "weedDupes", NULL) != NULL);
col->tablesUsed = cloneString(parameters);
col->exists = associationExists;
col->filterControls = associationFilterControls;
col->advFilter = associationAdvFilter;
col->cellVal = associationCellVal;
col->cellPrint = associationCellPrint;
if (columnSetting(col, "search", NULL))
col->simpleSearch = associationSimpleSearch;
}
static void searchAllColumns(struct sqlConnection *conn,
struct column *colList, char *search)
/* Call search on each column. */
{
struct column *col;
struct searchResult *srList, *sr;
struct columnSearchResults *csrList = NULL, *csr;
int totalCount = 0;
struct searchResult *srOne = NULL;
for (col = colList; col != NULL; col = col->next)
{
if (col->simpleSearch)
{
srList = col->simpleSearch(col, conn, search);
if (showOnlyCanonical() && srList != NULL)
{
transformToCanonical(srList, conn);
srList = removeDupes(srList);
}
if (srList != NULL)
{
srOne = srList;
fillInMissingLabels(conn, colList, srList);
AllocVar(csr);
csr->label = columnSetting(col, "searchLabel", col->longLabel);
csr->results = srList;
slAddTail(&csrList, csr);
totalCount += slCount(srList);
}
}
}
if (totalCount == 0)
{
displayData(conn, colList, NULL);
if (anyWild(search))
warn("Sorry, the search box doesn't take wildcards, "
"though in most cases it will find things without "
"them. Try entering your search without * or ? "
"characters.");
else
warn("Sorry, couldn't find '%s'", search);
}
else if (totalCount == 1 || allSame(csrList))
// else if (totalCount == 1)
displayData(conn, colList, &srOne->gp);
else
{
makeTitle("Simple Search Results", NULL);
for (csr = csrList; csr != NULL; csr = csr->next)
{
hPrintf("<H2>%s</H2>\n", csr->label);
slSort(&csr->results, searchResultCmpShortLabel);
for (sr = csr->results; sr != NULL; sr = sr->next)
{
selfAnchorSearch(&sr->gp);
if (sr->matchingId != NULL)
hPrintf("%s (%s)", sr->matchingId, sr->shortLabel);
else
hPrintf("%s", sr->shortLabel);
hPrintf("</A> - %s<BR>\n", sr->longLabel);
}
}
}
}
