void serverStatus()
/* Send status message to server and print result. */
{
int sd = netMustConnect(host, port);
FILE *f;
netSendString(sd, "status");
f = netFileFromSocket(sd);
copyOpenFile(f, stdout);
}
static FILE *chimeraxBegin(char *outName)
/* open chimerax file and write XML and python function definitions */
{
FILE *xfh = mustOpen(outName, "w");
fputs(chimeraxHead, xfh);
FILE *pxf = mustOpen(chimeraxPythonFile, "r");
copyOpenFile(pxf, xfh);
carefulClose(&pxf);
return xfh;
}
static void blatzClient(char *input, char *output)
/* Send query message and dna to server and print result. */
{
struct dnaLoad *dl = dnaLoadOpen(input);
struct dnaSeq *seq;
FILE *f = mustOpen(output, "w");
static struct optionSpec options[] = {
BZP_CLIENT_OPTIONS
};
int i;
while ((seq = dnaLoadNext(dl)) != NULL)
{
/* Connect */
int sd = netMustConnect(host, port);
FILE *sf = NULL;
/* Send query command. */
netSendString(sd, "query");
/* Send options. */
for (i=0; i<ArraySize(options); ++i)
sendOption(sd, options[i].name);
/* Send sequence. */
if (optionExists("rna") || optionExists("unmask"))
toUpperN(seq->dna, seq->size);
else
{
if (seqIsLower(seq))
warn("Sequence %s is all lower case, and thus ignored. Use -unmask "
"flag to unmask lower case sequence.", seq->name);
}
netSendString(sd, "seq");
netSendString(sd, seq->name);
netSendHugeString(sd, seq->dna);
verbose(1, "%s\n", seq->name);
dnaSeqFree(&seq);
/* Get and save response. */
sf = netFileFromSocket(sd);
copyOpenFile(sf, f);
carefulClose(&sf);
/* Close connection */
close(sd);
}
dnaLoadClose(&dl);
carefulClose(&f);
}
