const std::vector<std::string> & CDataArray::getAnnotationsString(size_t d, bool display) const
{
assert(d < mModes.size());
std::vector< std::string >::iterator itName = mAnnotationsString[d].begin();
std::vector< std::string >::iterator endName = mAnnotationsString[d].end();
if (mModes[d] == Mode::Numbers)
{
size_t Index = 1;
for (; itName != endName; ++Index, ++itName)
{
*itName = StringPrint("%d", Index);
}
}
else
{
std::vector<CRegisteredCommonName>::const_iterator itCN = mAnnotationsCN[d].begin();
for (; itName != endName; ++itCN, ++itName)
{
*itName = createDisplayName(*itCN);
}
}
return mAnnotationsString[d];
}
void Area::loadARE(const Aurora::GFF3Struct &are) {
// Tag
_tag = are.getString("Tag");
// Name
_name = are.getString("Name");
if (!_name.empty() && (*--_name.end() == '\n'))
_name.erase(--_name.end());
_displayName = createDisplayName(_name);
// Tiles
_width = are.getUint("Width");
_height = are.getUint("Height");
_tilesetName = are.getString("Tileset");
_tiles.resize(_width * _height);
loadTiles(are.getList("Tile_List"));
// Scripts
readScripts(are);
}
void CArrayAnnotation::setAnnotationCN(size_t d, size_t i, const std::string cn)
{
assert(d < dimensionality());
resizeOneDimension(d);
assert(i < mAnnotationsCN[d].size());
mAnnotationsCN[d][i] = cn;
mAnnotationsString[d][i] = createDisplayName(cn);
}
CDataArray::name_index_type CDataArray::displayNamesToCN(const std::vector< std::string > & DisplayNames) const
{
assert(DisplayNames.size() == dimensionality()
|| dimensionality() == 0);
name_index_type CNIndex(dimensionality());
name_index_type::iterator to = CNIndex.begin();
std::vector< std::string >::const_iterator it = DisplayNames.begin();
std::vector< std::string >::const_iterator end = DisplayNames.end();
std::vector< std::vector<CRegisteredCommonName> >::const_iterator itCNs = mAnnotationsCN.begin();
size_t dimension = 0;
for (; it != end && dimension < dimensionality(); ++it, ++itCNs, ++dimension, ++to)
{
std::vector<CRegisteredCommonName>::const_iterator itCN = itCNs->begin();
std::vector<CRegisteredCommonName>::const_iterator endCN = itCNs->end();
for (; itCN != endCN; ++itCN)
{
if (CCommonName::unescape(*it) == createDisplayName(*itCN))
{
*to = *itCN;
break;
}
}
if (itCN == endCN)
{
size_t index = C_INVALID_INDEX;
bool ValidIndex = strToIndex(*it, index);
if (ValidIndex)
{
if (itCNs->empty())
{
*to = *it;
}
else
{
*to = itCNs->operator [](index);
}
}
else
{
*to = std::string("not found");
}
}
}
return CNIndex;
}
void CArrayAnnotation::autoAnnotation(const size_t & d)
{
resizeOneDimension(d);
size_t i;
for (i = 0; i < mAnnotationsCN[d].size(); ++i)
{
std::stringstream I;
I << i;
mAnnotationsCN[d][i] = CCopasiObjectName("String=" + I.str());
mAnnotationsString[d][i] = createDisplayName(mAnnotationsCN[d][i]);
}
}
const std::vector<std::string> & CArrayAnnotation::getAnnotationsString(size_t d, bool display) const
{
assert(d < mModes.size());
std::vector<CRegisteredObjectName>::const_iterator itCN = mAnnotationsCN[d].begin();
std::vector<CRegisteredObjectName>::const_iterator endCN = mAnnotationsCN[d].end();
std::vector< std::string >::iterator itName = mAnnotationsString[d].begin();
for (; itCN != endCN; ++itCN, ++itName)
{
*itName = createDisplayName(*itCN);
}
return mAnnotationsString[d];
}
void CArrayAnnotation::updateDisplayNames() const
{
std::vector< std::vector<CRegisteredObjectName> >::const_iterator itCNs = mAnnotationsCN.begin();
std::vector< std::vector<CRegisteredObjectName> >::const_iterator endCNs = mAnnotationsCN.end();
std::vector< std::vector< std::string > >::iterator itNames = mAnnotationsString.begin();
for (; itCNs != endCNs; ++itCNs, ++itNames)
{
std::vector<CRegisteredObjectName>::const_iterator itCN = itCNs->begin();
std::vector<CRegisteredObjectName>::const_iterator endCN = itCNs->end();
std::vector< std::string >::iterator itName = itNames->begin();
for (; itCN != endCN; ++itCN, ++itName)
{
*itName = createDisplayName(*itCN);
}
}
}