void
Sopnet::createPipeline() {
LOG_DEBUG(sopnetlog) << "creating pipeline" << std::endl;
if (!_neuronSlices.isSet() && !_neuronSliceStackDirectories.isSet())
UTIL_THROW_EXCEPTION(
UsageError,
"either an image stack of slices or a list of directory names has to be set as 'neuron slices' or 'neuron slice stack directories'");
createBasicPipeline();
createInferencePipeline();
if (_groundTruth.isSet())
createTrainingPipeline();
_pipelineCreated = true;
}
void
Sopnet::createPipeline() {
LOG_DEBUG(sopnetlog) << "re-creating pipeline" << std::endl;
if (!_membranes || !_rawSections || !_groundTruth || !_segmentationCostFunctionParameters || !_priorCostFunctionParameters || !_forceExplanation) {
LOG_DEBUG(sopnetlog) << "not all inputs present -- skip pipeline creation" << std::endl;
return;
}
createBasicPipeline();
createInferencePipeline();
createTrainingPipeline();
}