void dispatch()
/* Set up a connection to database and dispatch control
* based on hgpDo type var. */
{
struct sqlConnection *conn = sqlConnect(visiDb);
if (cartVarExists(cart, hgpDoThumbnails))
doThumbnails(conn);
else if (cartVarExists(cart, hgpDoImage))
doImage(conn);
else if (cartVarExists(cart, hgpDoProbe))
doProbe(conn);
else if (cartVarExists(cart, hgpDoControls))
doControls(conn);
else if (cartVarExists(cart, hgpDoId))
doId(conn);
#ifdef SOON
else if (cartVarExists(cart, hgpDoConfig))
configPage(conn);
#endif /* SOON */
else if (cartVarExists(cart, hgpDoSearch))
doDefault(conn, TRUE);
else
{
char *oldListSpec = hashFindVal(oldCart, hgpListSpec);
char *newListSpec = cartOptionalString(cart, hgpListSpec);
boolean isNew = differentStringNullOk(oldListSpec, newListSpec);
doDefault(conn, isNew);
}
cartRemovePrefix(cart, hgpDoPrefix);
}
void CoverageFile::processHits(RecordOutputMgr *outputMgr, RecordKeyVector &hits) {
makeDepthCount(hits);
_finalOutput.clear();
switch(upCast(_context)->getCoverageType()) {
case ContextCoverage::COUNT:
doCounts(outputMgr, hits);
break;
case ContextCoverage::PER_BASE:
doPerBase(outputMgr, hits);
break;
case ContextCoverage::MEAN:
doMean(outputMgr, hits);
break;
case ContextCoverage::HIST:
doHist(outputMgr, hits);
break;
case ContextCoverage::DEFAULT:
default:
doDefault(outputMgr, hits);
break;
}
}
void doId(struct sqlConnection *conn)
/* Set up Gene Pix on given ID. */
{
int id = cartInt(cart, hgpDoId);
struct slName *genes = visiGeneGeneName(conn, id);
if (genes == NULL)
{
cartRemove(cart, hgpListSpec);
cartRemove(cart, hgpId);
}
else
{
cartSetInt(cart, hgpId, id);
cartSetString(cart, hgpListSpec, genes->name);
}
slFreeList(&genes);
doDefault(conn, FALSE);
}
