void ListBox::render() {
Frame::render();
if(selectionIndex != -1) {
Painter::Singleton->setColor(getHighlightColor());
Painter::Singleton->paintQuad(
itemPositions[selectionIndex],
Point2(size.x() - 2*LIST_BOX_PADDING_X, (itemPositions[selectionIndex+1] - itemPositions[selectionIndex]).y()));
}
for(unsigned int i=0; i<items.size(); i++) {
const std::string& s = items[i];
const Point2& p = itemPositions[i];
Painter::Singleton->print(Painter::Normal, s, p.x(), p.y() + LIST_BOX_PADDING_Y/2, getTextColor());
}
}
void SeqAA::show ( wxDC& dc )
{
if ( useDirectRoutines() ) { show_direct ( dc ) ; return ; }
wxMessageBox ( _T("One has to wonder...2") ) ;
int cw2 , ch2 ;
dc.SetFont(*can->smallFont);
dc.GetTextExtent ( _T("A") , &cw2 , &ch2 ) ;
dc.SetFont(*can->font);
wxColour tbg = dc.GetTextBackground () ;
wxColour tfg = dc.GetTextForeground () ;
int bm = dc.GetBackgroundMode () ;
int a = 0 , b , cnt = offset+1 ;
wxString t ;
wxColour bbg ( 150 , 150 , 255 ) ;
dc.SetTextBackground ( *wxWHITE ) ;
if ( primaryMode ) dc.SetTextForeground ( getHighlightColor ( a , *wxBLACK ) ) ;
else dc.SetTextForeground ( myapp()->frame->aa_color ) ;
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
int xa , ya , yb ;
dc.GetDeviceOrigin ( &xa , &ya ) ;
ya = -ya ;
can->MyGetClientSize ( &xa , &yb ) ;
yb += ya ;
for ( a = 0 ; a < pos.p.GetCount() ; a++ )
{
if ( can->hardstop > -1 && a > can->hardstop ) break ;
b = pos.p[a] ;
int ty = pos.r[a].y ;
int tz = ty + can->charheight ;
bool insight = true ;
if ( tz < ya ) insight = false ;
if ( ty > yb ) insight = false ;
if ( can->getDrawAll() ) insight = true ;
if ( !insight && ty > yb ) a = pos.p.GetCount() ;
if ( b > 0 && !insight ) cnt++ ;
if ( b > 0 && insight ) // Character
{
if ( getMark ( a ) == 1 )
{
if ( primaryMode )
{
dc.SetTextForeground ( *wxBLACK ) ;
dc.SetBackgroundMode ( wxSOLID ) ;
dc.SetTextBackground ( *wxLIGHT_GREY ) ;
}
else
{
dc.SetTextForeground ( bbg ) ;
dc.SetTextBackground ( *wxWHITE ) ;
}
}
else if ( getMark ( a ) == 2 && can->doOverwrite() )
{
dc.SetTextForeground ( *wxWHITE ) ;
dc.SetTextBackground ( *wxBLACK ) ;
dc.SetBackgroundMode ( wxSOLID ) ;
}
wxChar ch2 = s.GetChar(b-1) ;
if ( ch2 == '|' ) ch2 = myapp()->frame->stopcodon ;
t = ch2 ;
if ( can->isPrinting() && !can->getPrintToColor() )
{
dc.SetTextForeground ( *wxBLACK ) ;
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
}
dc.DrawText ( t, pos.r[a].x, pos.r[a].y ) ;
if ( getMark ( a ) == 2 && !can->doOverwrite() )
{
int tx = pos.r[a].x , ty = pos.r[a].y ;
int tz = ty + can->charheight ;
dc.SetPen(*wxBLACK_PEN);
dc.DrawLine ( tx-1 , ty , tx-1 , tz ) ;
dc.DrawLine ( tx-3 , ty , tx+2 , ty ) ;
dc.DrawLine ( tx-3 , tz , tx+2 , tz ) ;
}
if ( getMark ( a ) > 0 )
{
dc.SetTextBackground ( *wxWHITE ) ;
if ( primaryMode ) dc.SetTextForeground ( getHighlightColor ( a , *wxBLACK ) ) ;
else dc.SetTextForeground ( myapp()->frame->aa_color ) ;
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
}
// Protease cuts
for ( int q = 0 ; q < pc.GetCount() ; q++ )
{
if ( b == pc[q]->cut )
{
int qx = pos.r[a].x - 2 ;
int qy = pos.r[a].y ;
if ( !pc[q]->left ) qx += can->charwidth + 4 ;
dc.SetTextForeground ( *wxBLACK ) ;
dc.SetPen(*wxGREY_PEN);
dc.DrawLine ( qx , qy + 1 , qx , qy + can->charheight - 2 ) ;
dc.SetPen(*wxBLACK_PEN);
dc.DrawLine ( qx+1 , qy + 1 , qx+1 , qy + can->charheight - 2 ) ;
wxString pn = pc[q]->protease->name ;
for ( int w = 0 ; w+1 < pn.length() ; w++ )
if ( pn.GetChar(w) == ' ' && pn.GetChar(w+1) == '(' )
pn = pn.substr ( 0 , w ) ;
dc.SetFont(*can->smallFont);
int u1 , u2 ;
dc.GetTextExtent ( pn , &u1 , &u2 ) ;
dc.DrawText ( pn , qx - u1/2 , qy - u2/2 ) ;
dc.SetFont(*can->font);
if ( primaryMode ) dc.SetTextForeground ( getHighlightColor ( a , *wxBLACK ) ) ;
else dc.SetTextForeground ( myapp()->frame->aa_color ) ;
}
}
cnt++ ;
}
else if ( insight ) // Front number
{
// if ( primaryMode ) sprintf ( u , "%d" , cnt ) ;
// else sprintf ( u , "%d" , cnt/3 ) ;
// t = u ;
if ( primaryMode ) t = wxString::Format ( _T("%d") , cnt ) ;
else t = wxString::Format ( _T("%d") , cnt/3 ) ;
while ( t.length() < endnumberlength ) t = _T("0") + t ;
dc.DrawText ( t , pos.r[a].x, pos.r[a].y ) ;
}
}
dc.SetBackgroundMode ( bm ) ;
dc.SetTextBackground ( tbg ) ;
dc.SetTextForeground ( tfg ) ;
}
void SeqDNA::show_direct ( wxDC& dc )
{
myass ( itemsperline , "DNA:show_direct_ipl" ) ;
if ( !itemsperline ) return ;
myass ( can , "SeqDNA::show_direct1" ) ;
can->SetFont(*can->font);
dc.SetFont(*can->font);
int a , b , w , h , n , bo = can->border ;
int csgc = can->NumberOfLines() , cbs = can->blocksize ;
int cih = can->isHorizontal() ;
int xa , xb , ya , yb ;
for ( n = 0 ; n < can->seq.GetCount() && can->seq[n] != this ; n++ ) ;
if ( n == can->seq.GetCount() ) return ;
// Setting basic values
int cw = can->charwidth , ch = can->charheight ;
int ox = bo + cw + cw * endnumberlength ;
int oy = n*ch+bo ;
bool isPrimer = false ;
if ( whatsthis().StartsWith ( _T("PRIMER") ) ) isPrimer = true ;
can->MyGetClientSize ( &w , &h ) ;
xb = w ;
yb = h ;
wxColour tbg = dc.GetTextBackground () ;
wxColour tfg = dc.GetTextForeground () ;
int bm = dc.GetBackgroundMode () ;
dc.SetTextForeground ( fontColor ) ;
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.GetDeviceOrigin ( &xa , &ya ) ;
xa = -xa ;
xb += xa ;
ya = -ya ;
yb += ya ;
myass ( ch , "SeqDNA::show_direct2a" ) ;
myass ( csgc , "SeqDNA::show_direct2b" ) ;
b = ( ya - ch - oy ) / ( ch * csgc ) * itemsperline ;
for ( a = 0 ; a < b && a < s.length() ; a += itemsperline ) ;
myass ( itemsperline , "SeqDNA::show_direct3" ) ;
myass ( cbs , "SeqDNA::show_direct4" ) ;
for ( a = 0 ; a < s.length() ; a++ )
{
int px = a % itemsperline , py = a / itemsperline ;
bool showNumber = ( px == 0 ) ;
px = px * cw + ( px / cbs ) * ( cw - 1 ) + ox ;
py = py * ch * csgc + oy ;
if ( !can->getDrawAll() )
{
if ( py + ch < ya ) continue ;
if ( py > yb ) break ;
if ( cih )
{
if ( px + cw < xa ) continue ;
if ( px > xb ) continue ;
}
}
int pm = getMark ( a ) ;
char ac = s.GetChar(a) ;
if ( pm == 0 && !showNumber && ac == ' ' ) continue ;
if ( pm == 1 ) // Marked (light gray background)
{
dc.SetBackgroundMode ( wxSOLID ) ;
dc.SetTextBackground ( *wxLIGHT_GREY ) ;
dc.SetTextForeground ( *wxBLACK ) ;
}
else if ( pm == 2 && can->doOverwrite() ) // Overwrite cursor
{
dc.SetBackgroundMode ( wxSOLID ) ;
dc.SetTextBackground ( *wxBLACK ) ;
dc.SetTextForeground ( *wxWHITE ) ;
}
else dc.SetTextForeground ( getHighlightColor ( a , getBaseColor ( ac ) ) ) ;
if ( isPrimer )
{
if ( s.GetChar(a) == vec->getSequenceChar(a) ) dc.SetTextForeground ( *wxBLUE ) ;
else dc.SetTextForeground ( *wxRED ) ;
}
if ( can->isPrinting() && pm == 1 )
{
dc.SetBrush ( *MYBRUSH ( wxColour ( 230 , 230 , 230 ) ) ) ;
dc.SetPen(*wxTRANSPARENT_PEN);
dc.DrawRectangle ( px , py , cw , ch ) ;
}
if ( can->isPrinting() && !can->getPrintToColor() )
{
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.SetTextForeground ( *wxBLACK ) ;
}
dc.DrawText ( wxString ( (wxChar) ac ) , px , py ) ;
int pz = py + ch ;
if ( pm == 2 && !can->doOverwrite() ) // Insert cursor
{
dc.SetPen(*wxBLACK_PEN);
dc.DrawLine ( px-1 , py , px-1 , pz ) ;
dc.DrawLine ( px-3 , py , px+2 , py ) ;
dc.DrawLine ( px-3 , pz , px+2 , pz ) ;
}
if ( pm > 0 ) // Reverting cursor settings
{
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.SetTextForeground ( fontColor ) ;
}
// Methylation
if ( !invers && alternateName.IsEmpty() && wxNOT_FOUND != vec->getMethylationSiteIndex ( a ) )
{
dc.SetPen(*wxRED_PEN);
dc.DrawLine ( px , py + ch - 2 , px + cw , py + ch - 2 ) ;
dc.SetPen(*wxTRANSPARENT_PEN);
}
if ( showNumber )
{
dc.SetTextBackground ( tbg ) ;
dc.SetTextForeground ( tfg ) ;
mylog ( "SeqDNA::show_direct" , "A" ) ;
wxString t ;
if ( showNumbers )
{
mylog ( "SeqDNA::show_direct" , "B" ) ;
t = wxString::Format ( _T("%d") , a + 1 ) ;
int padd = endnumberlength - t.length() ;
mylog ( "SeqDNA::show_direct" , wxString::Format ( "C: %d, %d" , endnumberlength , padd ) ) ;
if ( padd > 0 && padd < 20 ) t.Pad ( padd , '0' , false ) ;
mylog ( "SeqDNA::show_direct" , "D" ) ;
}
else
{
mylog ( "SeqDNA::show_direct" , "B2" ) ;
if ( isPrimer ) dc.SetTextForeground ( *wxBLUE ) ;
else dc.SetTextForeground ( *wxBLACK ) ;
mylog ( "SeqDNA::show_direct" , "C2" ) ;
t = alternateName ;
mylog ( "SeqDNA::show_direct" , "D2" ) ;
}
dc.DrawText ( t , bo , py ) ;
mylog ( "SeqDNA::show_direct" , "E" ) ;
}
}
dc.SetBackgroundMode ( bm ) ;
dc.SetTextBackground ( tbg ) ;
dc.SetTextForeground ( tfg ) ;
}
void SeqAA::show_direct ( wxDC& dc )
{
myass ( itemsperline , "AA:show_direct_ipl" ) ;
if ( !itemsperline ) return ;
mylog ( "SeqAA::show_direct" , "0" ) ;
can->SetFont(*can->font);
dc.SetFont(*can->font);
int a , b , w , h , n , bo = can->border ;
int csgc = can->NumberOfLines() , cbs = can->blocksize ;
int cih = can->isHorizontal() ;
int xa , xb , ya , yb ;
for ( n = 0 ; n < csgc && can->seq[n] != this ; n++ ) ;
if ( n == csgc ) return ;
mylog ( "SeqAA::show_direct" , "1" ) ;
// Setting basic values
int cw = can->charwidth , ch = can->charheight ;
int ox = bo + cw + cw * endnumberlength ;
int oy = n*ch+bo ;
can->MyGetClientSize ( &w , &h ) ;
xb = w ;
yb = h ;
wxColour tbg = dc.GetTextBackground () ;
wxColour tfg = dc.GetTextForeground () ;
int bm = dc.GetBackgroundMode () ;
wxColour tf ;
if ( primaryMode ) tf = *wxBLACK ;
else tf = myapp()->frame->aa_color ;; // wxColour ( 130 , 130 , 130 ) ;//*wxLIGHT_GREY ;
dc.SetTextForeground ( tf ) ;
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.GetDeviceOrigin ( &xa , &ya ) ;
xa = -xa ;
xb += xa ;
ya = -ya ;
yb += ya ;
mylog ( "SeqAA::show_direct" , "2" ) ;
b = ( ya - ch - oy ) / ( ch * csgc ) * itemsperline ;
mylog ( "SeqAA::show_direct" , "3" ) ;
for ( a = 0 ; a < b && a < s.length() ; a += itemsperline ) ;
for ( ; a < s.length() ; a++ )
{
int px = a % itemsperline , py = a / itemsperline ;
bool showNumber = ( px == 0 ) ;
px = px * cw + ( px / cbs ) * ( cw - 1 ) + ox ;
py = py * ch * csgc + oy ;
if ( !can->getDrawAll() )
{
if ( py + ch < ya ) continue ;
if ( py > yb ) break ;
if ( cih )
{
if ( px + cw < xa ) continue ;
if ( px > xb ) continue ;
}
}
int pm = getMark ( a ) ;
if ( pm == 1 ) // Marked (light gray background)
{
dc.SetBackgroundMode ( wxSOLID ) ;
dc.SetTextBackground ( *wxLIGHT_GREY ) ;
dc.SetTextForeground ( getHighlightColor ( a , tf ) ) ;
}
else if ( pm == 2 && can->doOverwrite() ) // Overwrite cursor
{
dc.SetBackgroundMode ( wxSOLID ) ;
dc.SetTextBackground ( *wxBLACK ) ;
}
if ( pm == 2 && can->doOverwrite() ) dc.SetTextForeground ( *wxWHITE ) ;
else dc.SetTextForeground ( getHighlightColor ( a , tf ) ) ;
if ( can->isPrinting() && pm == 1 )
{
dc.SetBrush ( *MYBRUSH ( wxColour ( 230 , 230 , 230 ) ) ) ;
dc.SetPen(*wxTRANSPARENT_PEN);
dc.DrawRectangle ( px , py , cw , ch ) ;
}
if ( can->isPrinting() && !can->getPrintToColor() )
{
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.SetTextForeground ( *wxBLACK ) ;
}
// Show the char
wxChar ch2 = s.GetChar(a) ;
if ( ch2 == '|' ) ch2 = myapp()->frame->stopcodon ;
dc.DrawText ( wxString ( ch2 ) , px , py ) ;
int pz = py + ch ;
if ( pm == 2 && !can->doOverwrite() ) // Insert cursor
{
dc.SetPen(*wxBLACK_PEN);
dc.DrawLine ( px-1 , py , px-1 , pz ) ;
dc.DrawLine ( px-3 , py , px+2 , py ) ;
dc.DrawLine ( px-3 , pz , px+2 , pz ) ;
}
if ( pm > 0 ) // Reverting cursor settings
{
dc.SetBackgroundMode ( wxTRANSPARENT ) ;
dc.SetTextForeground ( getHighlightColor ( a , tf ) ) ;
}
// Protease cuts
for ( int q = 0 ; q < pc.GetCount() ; q++ )
{
if ( a == pc[q]->cut - pc[q]->left )
{
int qx = px ;
int qy = py ;
if ( !pc[q]->left ) qx += cw + 4 ;
dc.SetTextForeground ( *wxBLACK ) ;
dc.SetPen(*wxGREY_PEN);
dc.DrawLine ( qx , qy + 1 , qx , qy + can->charheight - 2 ) ;
dc.SetPen(*wxBLACK_PEN);
dc.DrawLine ( qx+1 , qy + 1 , qx+1 , qy + can->charheight - 2 ) ;
wxString pn = pc[q]->protease->name ;
for ( int w = 0 ; w+1 < pn.length() ; w++ )
if ( pn.GetChar(w) == ' ' && pn.GetChar(w+1) == '(' )
pn = pn.substr ( 0 , w ) ;
dc.SetFont(*can->smallFont);
int u1 , u2 ;
dc.GetTextExtent ( pn , &u1 , &u2 ) ;
dc.DrawText ( pn , qx - u1/2 , qy - u2/2 ) ;
dc.SetFont(*can->font);
if ( primaryMode ) dc.SetTextForeground ( getHighlightColor ( a , *wxBLACK ) ) ;
else dc.SetTextForeground ( myapp()->frame->aa_color /* *wxLIGHT_GREY */ ) ;
}
}
if ( showNumber && primaryMode )
{
wxString t = wxString::Format ( _T("%d") , a + 1 ) ;
while ( endnumberlength > t.length() ) t = _T("0") + t ;
// t.Pad ( endnumberlength - t.length() , '0' , false ) ;
dc.DrawText ( t , bo , py ) ;
}
}
dc.SetBackgroundMode ( bm ) ;
dc.SetTextBackground ( tbg ) ;
dc.SetTextForeground ( tfg ) ;
}