int main(int argc, char *argv[])
{
if (argc != 2)
usage();
snpDb = argv[1];
hSetDb(snpDb);
outputFileHandle = mustOpen("snpPAR.tab", "w");
exceptionFileHandle = mustOpen("snpPARexceptions.tab", "w");
getSnps();
getExceptions();
loadDatabase();
carefulClose(&outputFileHandle);
carefulClose(&exceptionFileHandle);
return 0;
}
int main(int argc, char *argv[])
{
char *snpDb = NULL;
char *snpTableName = NULL;
struct hashCookie cookie;
char *chromName = NULL;
if (argc != 3)
usage();
snpDb = argv[1];
hSetDb(snpDb);
snpTableName = argv[2];
/* check that tables exist */
if (!hTableExists(snpTableName))
errAbort("no %s table in %s\n", snpTableName, snpDb);
if (!hTableExists("chromInfo"))
errAbort("no chromInfo table in %s\n", snpDb);
loadChroms();
getSnps(snpTableName);
verbose(1, "creating tables...\n");
cookie = hashFirst(chromHash);
while ((chromName = hashNextName(&cookie)) != NULL)
createTable(chromName);
verbose(1, "loading database...\n");
cookie = hashFirst(chromHash);
while ((chromName = hashNextName(&cookie)) != NULL)
{
verbose(1, "chrom = %s\n", chromName);
loadDatabase(chromName);
}
return 0;
}
