void fillInCommonMetadata(const string& filename, MSData& msd) { appendSourceFile(filename, msd); msd.cvs = defaultCVList(); SoftwarePtr softwarePwiz = getSoftwarePwiz(msd.softwarePtrs); DataProcessingPtr dpPwiz(new DataProcessing); dpPwiz->id = "pwiz_Reader_conversion"; dpPwiz->processingMethods.push_back(ProcessingMethod()); dpPwiz->processingMethods.back().softwarePtr = softwarePwiz; dpPwiz->processingMethods.back().cvParams.push_back(MS_Conversion_to_mzML); // give ownership of dpPwiz to the SpectrumList (and ChromatogramList) SpectrumListBase* sl = dynamic_cast<SpectrumListBase*>(msd.run.spectrumListPtr.get()); ChromatogramListBase* cl = dynamic_cast<ChromatogramListBase*>(msd.run.chromatogramListPtr.get()); if (sl) sl->setDataProcessingPtr(dpPwiz); if (cl) cl->setDataProcessingPtr(dpPwiz); // the file-level ids can't be empty if (msd.id.empty() || msd.run.id.empty()) msd.id = msd.run.id = bfs::basename(filename); }
void fillInCommonMetadata(const string& filename, TraData& td) { td.cvs = defaultCVList(); SoftwarePtr softwarePwiz = getSoftwarePwiz(td.softwarePtrs); }