/*
* Sets a scaffold name.
*
* Returns 0 on success
* -1 on failure
*/
int scaffold_set_name(GapIO *io, scaffold_t **f, char *name) {
scaffold_t *n;
GapIO *iob = gio_base(io);
if (!(n = cache_rw(io, *f)))
return -1;
/* Delete old name */
if (n->name) {
tg_rec r = iob->iface->scaffold.index_del(iob->dbh, n->name, n->rec);
if (r != -1 && r != io->db->scaffold_name_index) {
io->db = cache_rw(io, io->db);
io->db->scaffold_name_index = r;
}
}
if (NULL == (n = cache_item_resize(n, sizeof(*n) + strlen(name)+1)))
return -1;
*f = n;
/* Add new name */
n->name = (char *)(&n->data);
strcpy(n->name, name);
if (*name) {
tg_rec r = iob->iface->scaffold.index_add(iob->dbh, name, n->rec);
if (r != -1 && r != io->db->scaffold_name_index) {
io->db = cache_rw(io, io->db);
io->db->scaffold_name_index = r;
}
}
return 0;
}
int io_timestamp_incr(GapIO *io) {
io = gio_base(io);
io->db = cache_rw(io, io->db);
return ++io->db->timestamp;
}