static void
create_merged_field(GwyContainer *data, gint id1,
GwyDataField *dfield1, GwyDataField *dfield2,
gint px1, gint py1, gint px2, gint py2,
GwyMergeBoundaryType boundary, GwyMergeDirectionType dir,
gboolean create_mask, gboolean crop_to_rectangle)
{
GwyDataField *result, *outsidemask = NULL;
gint newxres, newyres, newid;
gwy_debug("field1 %dx%d", dfield1->xres, dfield1->yres);
gwy_debug("field2 %dx%d", dfield2->xres, dfield2->yres);
gwy_debug("px1: %d, py1: %d, px2: %d, py2: %d", px1, py1, px2, py2);
result = gwy_data_field_new_alike(dfield1, FALSE);
newxres = MAX(dfield1->xres + px1, dfield2->xres + px2);
newyres = MAX(dfield1->yres + py1, dfield2->yres + py2);
gwy_data_field_resample(result, newxres, newyres, GWY_INTERPOLATION_NONE);
if (create_mask && !crop_to_rectangle) {
outsidemask = gwy_data_field_new_alike(result, FALSE);
gwy_si_unit_set_from_string(gwy_data_field_get_si_unit_z(outsidemask),
NULL);
}
put_fields(dfield1, dfield2, result, outsidemask,
boundary, px1, py1, px2, py2);
if (crop_to_rectangle) {
GwyOrientation orientation = GWY_ORIENTATION_HORIZONTAL;
if (dir == GWY_MERGE_DIRECTION_UP || dir == GWY_MERGE_DIRECTION_DOWN)
orientation = GWY_ORIENTATION_VERTICAL;
crop_result(result, dfield1, dfield2, orientation, px1, py1, px2, py2);
}
gwy_app_data_browser_get_current(GWY_APP_CONTAINER, &data, 0);
newid = gwy_app_data_browser_add_data_field(result, data, TRUE);
gwy_app_set_data_field_title(data, newid, _("Merged images"));
gwy_app_sync_data_items(data, data, id1, newid,
FALSE,
GWY_DATA_ITEM_PALETTE,
GWY_DATA_ITEM_MASK_COLOR,
GWY_DATA_ITEM_RANGE,
0);
if (outsidemask) {
if (gwy_data_field_get_max(outsidemask) > 0.0) {
GQuark quark = gwy_app_get_mask_key_for_id(newid);
gwy_container_set_object(data, quark, outsidemask);
}
g_object_unref(outsidemask);
}
gwy_app_channel_log_add_proc(data, -1, newid);
g_object_unref(result);
}
/* create a smaller copy of data */
static GwyContainer*
create_preview_data(GwyContainer *data,
GwyDataField *dfield,
GwyDataField *mfield,
gint id)
{
GwyContainer *pdata;
GwyDataField *pfield;
gint xres, yres;
gdouble zoomval;
pdata = gwy_container_new();
xres = gwy_data_field_get_xres(dfield);
yres = gwy_data_field_get_yres(dfield);
zoomval = (gdouble)PREVIEW_SIZE/MAX(xres, yres);
xres = MAX(xres*zoomval, 3);
yres = MAX(yres*zoomval, 3);
/* Base data */
pfield = gwy_data_field_new_resampled(dfield, xres, yres,
GWY_INTERPOLATION_ROUND);
gwy_container_set_object_by_name(pdata, "/source", pfield);
g_object_unref(pfield);
/* Mask */
if (mfield) {
pfield = gwy_data_field_new_resampled(mfield, xres, yres,
GWY_INTERPOLATION_ROUND);
gwy_container_set_object_by_name(pdata, "/mask", pfield);
g_object_unref(pfield);
}
/* Leveled */
pfield = gwy_data_field_new_alike(pfield, FALSE);
gwy_container_set_object_by_name(pdata, "/0/data", pfield);
g_object_unref(pfield);
/* Background */
pfield = gwy_data_field_new_alike(pfield, FALSE);
gwy_container_set_object_by_name(pdata, "/1/data", pfield);
g_object_unref(pfield);
gwy_app_sync_data_items(data, pdata, id, 0, FALSE,
GWY_DATA_ITEM_GRADIENT,
0);
gwy_app_sync_data_items(data, pdata, id, 1, FALSE,
GWY_DATA_ITEM_GRADIENT,
0);
return pdata;
}
static void
line_correct_step(GwyContainer *data,
GwyRunType run)
{
GwyDataField *dfield, *mask;
GQuark dquark;
g_return_if_fail(run & LINECORR_RUN_MODES);
gwy_app_data_browser_get_current(GWY_APP_DATA_FIELD, &dfield,
GWY_APP_DATA_FIELD_KEY, &dquark,
0);
g_return_if_fail(dfield && dquark);
gwy_app_undo_qcheckpointv(data, 1, &dquark);
gwy_data_field_absdiff_line_correct(dfield);
mask = gwy_data_field_new_alike(dfield, TRUE);
line_correct_step_iter(dfield, mask);
gwy_data_field_clear(mask);
line_correct_step_iter(dfield, mask);
g_object_unref(mask);
gwy_data_field_filter_conservative(dfield, 5);
gwy_data_field_data_changed(dfield);
}
static void
poly_level_do(GwyContainer *data,
GwyDataField *dfield,
GwyDataField *mfield,
GQuark quark,
gint oldid,
const PolyLevelArgs *args)
{
GwyDataField *bg = NULL;
gint newid;
gwy_app_undo_qcheckpointv(data, 1, &quark);
if (args->do_extract)
bg = gwy_data_field_new_alike(dfield, TRUE);
if (mfield && args->masking != GWY_MASK_IGNORE)
poly_level_do_with_mask(dfield, mfield, dfield, bg, args);
else if (args->independent)
poly_level_do_independent(dfield, dfield, bg,
args->col_degree, args->row_degree);
else
poly_level_do_maximum(dfield, dfield, bg, args->max_degree);
if (!args->do_extract)
return;
newid = gwy_app_data_browser_add_data_field(bg, data, TRUE);
g_object_unref(bg);
gwy_app_sync_data_items(data, data, oldid, newid, FALSE,
GWY_DATA_ITEM_GRADIENT,
0);
gwy_app_set_data_field_title(data, newid, _("Background"));
}
static GwyDataField*
make_mask_field(GwyDataField *dfield,
const guchar *data)
{
GwyDataField *mfield;
guint xres, yres, i, j, rowstride;
const guchar *datarow;
gdouble *d;
xres = gwy_data_field_get_xres(dfield);
yres = gwy_data_field_get_yres(dfield);
rowstride = xres;
/* Do not create the mask if it is all zero. */
for (i = 0; i < rowstride*yres; i++) {
if (!data[i])
break;
}
if (i == rowstride*yres)
return NULL;
mfield = gwy_data_field_new_alike(dfield, FALSE);
d = gwy_data_field_get_data(mfield);
for (i = 0; i < yres; i++) {
datarow = data + (yres-1 - i)*rowstride;
for (j = 0; j < xres; j++) {
*(d++) = datarow[j];
}
}
return mfield;
}
static void
rotate_counterclockwise_90(GwyContainer *data, GwyRunType run)
{
GwyDataField *dfields[3], *newfield;
GQuark quarks[3];
gint i, id;
g_return_if_fail(run & BASICOPS_RUN_MODES);
gwy_app_data_browser_get_current(GWY_APP_DATA_FIELD, dfields + 0,
GWY_APP_MASK_FIELD, dfields + 1,
GWY_APP_SHOW_FIELD, dfields + 2,
GWY_APP_DATA_FIELD_KEY, quarks + 0,
GWY_APP_MASK_FIELD_KEY, quarks + 1,
GWY_APP_SHOW_FIELD_KEY, quarks + 2,
GWY_APP_DATA_FIELD_ID, &id,
0);
clean_quarks(G_N_ELEMENTS(quarks), quarks, dfields);
gwy_app_undo_qcheckpointv(data, G_N_ELEMENTS(quarks), quarks);
for (i = 0; i < G_N_ELEMENTS(dfields); i++) {
if (dfields[i]) {
newfield = gwy_data_field_new_alike(dfields[i], FALSE);
flip_xy(dfields[i], newfield, TRUE);
gwy_container_set_object(data, quarks[i], newfield);
g_object_unref(newfield);
}
}
gwy_app_data_clear_selections(data, id);
gwy_app_channel_log_add_proc(data, id, id);
}
/* Note: rms and avg must be identical and contain a copy of the original data
* field */
static void
calculate_normalization(GwyDataField *avg,
GwyDataField *rms,
gint kernel_width,
gint kernel_height)
{
GwyDataField *buffer;
gint xres, yres, i;
g_return_if_fail(rms->xres == avg->xres && rms->yres == avg->yres);
xres = avg->xres;
yres = avg->yres;
for (i = 0; i < xres*yres; i++)
rms->data[i] *= rms->data[i];
buffer = gwy_data_field_new_alike(avg, FALSE);
gwy_data_field_area_gather(rms, rms, buffer,
kernel_width, kernel_height, TRUE,
0, 0, xres, yres);
gwy_data_field_area_gather(avg, avg, buffer,
kernel_width, kernel_height, TRUE,
0, 0, xres, yres);
g_object_unref(buffer);
for (i = 0; i < xres*yres; i++) {
rms->data[i] -= avg->data[i]*avg->data[i];
rms->data[i] = sqrt(MAX(rms->data[i], 0.0));
}
}
static void
laplace(GwyContainer *data, GwyRunType run)
{
GwyDataField *dfield, *mfield, *buffer;
GQuark dquark;
gdouble error, cor, maxer, lastfrac, frac, starter;
gint i, id;
gboolean cancelled = FALSE;
g_return_if_fail(run & LAPLACE_RUN_MODES);
gwy_app_data_browser_get_current(GWY_APP_DATA_FIELD_KEY, &dquark,
GWY_APP_DATA_FIELD, &dfield,
GWY_APP_MASK_FIELD, &mfield,
GWY_APP_DATA_FIELD_ID, &id,
0);
g_return_if_fail(dfield && dquark && mfield);
maxer = gwy_data_field_get_rms(dfield)/1.0e4;
gwy_app_wait_start(gwy_app_find_window_for_channel(data, id),
_("Laplace interpolation..."));
dfield = gwy_data_field_duplicate(dfield);
buffer = gwy_data_field_new_alike(dfield, TRUE);
gwy_data_field_correct_average(dfield, mfield);
cor = 0.2;
error = 0.0;
lastfrac = 0.0;
starter = 0.0;
for (i = 0; i < 5000; i++) {
gwy_data_field_correct_laplace_iteration(dfield, mfield, buffer,
cor, &error);
if (error < maxer)
break;
if (!i)
starter = error;
frac = log(error/starter)/log(maxer/starter);
if ((i/(gdouble)(5000)) > frac)
frac = i/(gdouble)(5000);
if (lastfrac > frac)
frac = lastfrac;
if (!gwy_app_wait_set_fraction(frac)) {
cancelled = TRUE;
break;
}
lastfrac = frac;
}
gwy_app_wait_finish();
if (!cancelled) {
gwy_app_undo_qcheckpointv(data, 1, &dquark);
gwy_container_set_object(data, dquark, dfield);
gwy_app_channel_log_add_proc(data, id, id);
}
g_object_unref(dfield);
g_object_unref(buffer);
}
static GwyDataField*
create_mask_field(GwyDataField *dfield)
{
GwyDataField *mfield;
GwySIUnit *siunit;
mfield = gwy_data_field_new_alike(dfield, FALSE);
siunit = gwy_si_unit_new("");
gwy_data_field_set_si_unit_z(mfield, siunit);
g_object_unref(siunit);
return mfield;
}
static GwyDataField*
prof_psdf(GwyDataField *dfield,
const ProfArgs *args)
{
GwyDataField *fftre, *fftim;
GwySIUnit *zunit;
const gdouble *im;
gdouble *re;
gint xres, yres, i;
fftre = gwy_data_field_new_alike(dfield, FALSE);
fftim = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_2dfft(dfield, NULL, fftre, fftim,
args->windowing,
GWY_TRANSFORM_DIRECTION_FORWARD,
GWY_INTERPOLATION_LINEAR, /* ignored */
FALSE, 1);
xres = gwy_data_field_get_xres(dfield);
yres = gwy_data_field_get_yres(dfield);
re = gwy_data_field_get_data(fftre);
im = gwy_data_field_get_data_const(fftim);
/* Put the PSDF to fftre. */
for (i = 0; i < xres*yres; i++)
re[i] = re[i]*re[i] + im[i]*im[i];
g_object_unref(fftim);
gwy_data_field_fft_postprocess(fftre, TRUE);
zunit = gwy_data_field_get_si_unit_z(fftre);
gwy_si_unit_power(gwy_data_field_get_si_unit_z(dfield), 2, zunit);
gwy_si_unit_multiply(gwy_data_field_get_si_unit_xy(dfield), zunit, zunit);
return fftre;
}
static void
gedge_process(GwyDataField *dfield,
GwyDataField *maskfield,
GEdgeArgs *args)
{
GwyDataField *temp_field;
temp_field = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_copy(dfield, temp_field, FALSE);
gwy_data_field_filter_laplacian_of_gaussians(temp_field);
gwy_data_field_grains_mark_height(temp_field, maskfield,
args->threshold_laplasian, TRUE);
g_object_unref(temp_field);
}
static GwyContainer*
asc_load(const gchar *filename,
G_GNUC_UNUSED GwyRunType mode,
GError **error)
{
GwyContainer *container = NULL;
GwyDataField *dfield = NULL, *mfield = NULL;
GwyTextHeaderParser parser;
GwySIUnit *unit;
gchar *line, *p, *value, *buffer = NULL;
GHashTable *hash = NULL;
gsize size;
GError *err = NULL;
gdouble xreal, yreal, q;
gint i, xres, yres;
gdouble *data;
if (!g_file_get_contents(filename, &buffer, &size, &err)) {
err_GET_FILE_CONTENTS(error, &err);
goto fail;
}
p = buffer;
line = gwy_str_next_line(&p);
if (!gwy_strequal(line, MAGIC_BARE)) {
err_FILE_TYPE(error, "SPIP ASCII data");
goto fail;
}
gwy_clear(&parser, 1);
parser.line_prefix = "#";
parser.key_value_separator = "=";
parser.terminator = "# Start of Data:";
parser.error = &header_error;
parser.end = &header_end;
if (!(hash = gwy_text_header_parse(p, &parser, &p, &err))) {
g_propagate_error(error, err);
goto fail;
}
if (!require_keys(hash, error,
"x-pixels", "y-pixels", "x-length", "y-length",
NULL))
goto fail;
xres = atoi(g_hash_table_lookup(hash, "x-pixels"));
yres = atoi(g_hash_table_lookup(hash, "y-pixels"));
if (err_DIMENSION(error, xres) || err_DIMENSION(error, yres))
goto fail;
xreal = Nanometer * g_ascii_strtod(g_hash_table_lookup(hash, "x-length"),
NULL);
yreal = Nanometer * g_ascii_strtod(g_hash_table_lookup(hash, "y-length"),
NULL);
/* Use negated positive conditions to catch NaNs */
if (!((xreal = fabs(xreal)) > 0)) {
g_warning("Real x size is 0.0, fixing to 1.0");
xreal = 1.0;
}
if (!((yreal = fabs(yreal)) > 0)) {
g_warning("Real y size is 0.0, fixing to 1.0");
yreal = 1.0;
}
dfield = gwy_data_field_new(xres, yres, xreal, yreal, FALSE);
unit = gwy_si_unit_new("m");
gwy_data_field_set_si_unit_xy(dfield, unit);
g_object_unref(unit);
if ((value = g_hash_table_lookup(hash, "z-unit"))) {
gint power10;
unit = gwy_si_unit_new_parse(value, &power10);
gwy_data_field_set_si_unit_z(dfield, unit);
g_object_unref(unit);
q = pow10(power10);
}
else if ((value = g_hash_table_lookup(hash, "Bit2nm"))) {
q = Nanometer * g_ascii_strtod(value, NULL);
unit = gwy_si_unit_new("m");
gwy_data_field_set_si_unit_z(dfield, unit);
g_object_unref(unit);
}
else
q = 1.0;
data = gwy_data_field_get_data(dfield);
value = p;
for (i = 0; i < xres*yres; i++) {
data[i] = q*g_ascii_strtod(value, &p);
if (p == value && (!*p || g_ascii_isspace(*p))) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached when reading sample #%d of %d"),
i, xres*yres);
goto fail;
}
if (p == value) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("Malformed data encountered when reading sample "
"#%d of %d"),
i, xres*yres);
goto fail;
}
value = p;
}
if ((value = g_hash_table_lookup(hash, "voidpixels")) && atoi(value)) {
mfield = gwy_data_field_new_alike(dfield, FALSE);
data = gwy_data_field_get_data(mfield);
value = p;
for (i = 0; i < xres*yres; i++) {
data[i] = 1.0 - g_ascii_strtod(value, &p);
value = p;
}
if (!gwy_app_channel_remove_bad_data(dfield, mfield))
GWY_OBJECT_UNREF(mfield);
}
container = gwy_container_new();
gwy_container_set_object(container, gwy_app_get_data_key_for_id(0), dfield);
if (mfield) {
gwy_container_set_object(container, gwy_app_get_mask_key_for_id(0),
mfield);
g_object_unref(mfield);
}
gwy_file_channel_import_log_add(container, 0, NULL, filename);
fail:
GWY_OBJECT_UNREF(dfield);
g_free(buffer);
if (hash)
g_hash_table_destroy(hash);
return container;
}
static void
dwt_anisotropy(GwyContainer *data, GwyRunType run)
{
GtkWidget *dialog;
GwyDataField *dfield, *mask;
GQuark dquark, mquark;
GwyDataLine *wtcoefs;
DWTAnisotropyArgs args;
gboolean ok;
gint xsize, ysize, newsize, limit, id, i;
g_return_if_fail(run & DWT_ANISOTROPY_RUN_MODES);
gwy_app_data_browser_get_current(GWY_APP_DATA_FIELD_KEY, &dquark,
GWY_APP_DATA_FIELD, &dfield,
GWY_APP_DATA_FIELD_ID, &id,
GWY_APP_MASK_FIELD_KEY, &mquark,
GWY_APP_MASK_FIELD, &mask,
0);
g_return_if_fail(dfield && dquark);
xsize = gwy_data_field_get_xres(dfield);
ysize = gwy_data_field_get_yres(dfield);
if (xsize != ysize) {
dialog = gtk_message_dialog_new
(gwy_app_find_window_for_channel(data, id),
GTK_DIALOG_DESTROY_WITH_PARENT,
GTK_MESSAGE_ERROR,
GTK_BUTTONS_OK,
_("%s: Data must be square."), _("DWT Anisotropy"));
gtk_dialog_run(GTK_DIALOG(dialog));
gtk_widget_destroy(dialog);
return;
}
dwt_anisotropy_load_args(gwy_app_settings_get(), &args);
if (run == GWY_RUN_INTERACTIVE) {
ok = dwt_anisotropy_dialog(&args);
dwt_anisotropy_save_args(gwy_app_settings_get(), &args);
if (!ok)
return;
}
for (newsize = 1, i = xsize-1; i; i >>= 1, newsize <<= 1)
;
dfield = gwy_data_field_new_resampled(dfield, newsize, newsize,
args.interp);
gwy_data_field_add(dfield, -gwy_data_field_get_avg(dfield));
gwy_app_undo_qcheckpoint(data, dquark, mquark, 0);
if (!mask) {
mask = gwy_data_field_new_alike(dfield, FALSE);
gwy_container_set_object(data, mquark, mask);
g_object_unref(mask);
}
gwy_data_field_resample(mask, newsize, newsize, GWY_INTERPOLATION_NONE);
wtcoefs = gwy_data_line_new(10, 10, TRUE);
wtcoefs = gwy_dwt_set_coefficients(wtcoefs, args.wavelet);
/*justo for sure clamp the lowlimit again*/
limit = pow(2, CLAMP(args.lowlimit, 1, 20));
gwy_data_field_dwt_mark_anisotropy(dfield, mask, wtcoefs, args.ratio,
limit);
gwy_data_field_resample(mask, xsize, ysize, GWY_INTERPOLATION_ROUND);
g_object_unref(wtcoefs);
g_object_unref(dfield);
gwy_data_field_data_changed(mask);
gwy_app_channel_log_add_proc(data, id, id);
}
static void
immerse_correlate(GwyDataField *image,
GwyDataField *kernel,
gint *col,
gint *row)
{
GwyDataField *subimage, *subkernel, *score, *imagearea;
gdouble factor;
gint ixres, iyres, kxres, kyres;
gint sixres, siyres, skxres, skyres;
gint xfrom, yfrom, xto, yto;
gint sx, sy, delta;
ixres = gwy_data_field_get_xres(image);
iyres = gwy_data_field_get_yres(image);
kxres = gwy_data_field_get_xres(kernel);
kyres = gwy_data_field_get_yres(kernel);
gwy_debug("kernel: %dx%d, image: %dx%d", kxres, kyres, ixres, iyres);
factor = MAX(downsample_factor, downsample_limit/sqrt(kxres*kyres));
factor = MIN(factor, 1.0);
skxres = GWY_ROUND(factor*kxres);
skyres = GWY_ROUND(factor*kyres);
sixres = GWY_ROUND(factor*ixres);
siyres = GWY_ROUND(factor*iyres);
gwy_debug("skernel: %dx%d, simage: %dx%d", skxres, skyres, sixres, siyres);
subimage = gwy_data_field_new_resampled(image, sixres, siyres,
GWY_INTERPOLATION_LINEAR);
score = gwy_data_field_new_alike(subimage, FALSE);
subkernel = gwy_data_field_new_resampled(kernel, skxres, skyres,
GWY_INTERPOLATION_LINEAR);
gwy_data_field_correlate(subimage, subkernel, score,
GWY_CORRELATION_NORMAL);
immerse_find_maximum(score, &sx, &sy);
gwy_debug("sx: %d, sy: %d", sx, sy);
g_object_unref(score);
g_object_unref(subkernel);
g_object_unref(subimage);
/* Top left corner coordinate */
sx -= (skxres - 1)/2;
sy -= (skyres - 1)/2;
/* Upscaled to original size */
sx = GWY_ROUND((gdouble)ixres/sixres*sx);
sy = GWY_ROUND((gdouble)iyres/siyres*sy);
/* Uncertainty margin */
delta = GWY_ROUND(1.5/factor + 1);
/* Subarea to search */
xfrom = MAX(sx - delta, 0);
yfrom = MAX(sy - delta, 0);
xto = MIN(sx + kxres + delta, ixres);
yto = MIN(sy + kyres + delta, iyres);
imagearea = gwy_data_field_area_extract(image,
xfrom, yfrom,
xto - xfrom, yto - yfrom);
score = gwy_data_field_new_alike(imagearea, FALSE);
gwy_data_field_correlate(imagearea, kernel, score,
GWY_CORRELATION_NORMAL);
immerse_find_maximum(score, &sx, &sy);
g_object_unref(score);
g_object_unref(imagearea);
*col = sx + xfrom - (kxres - 1)/2;
*row = sy + yfrom - (kyres - 1)/2;
}
static void
preview(EntropyControls *controls)
{
EntropyArgs *args = controls->args;
GwyDataField *dfield = controls->dfield;
GwyDataField *mfield = controls->mfield;
GwyGraphModel *gmodel;
GwyGraphCurveModel *gcmodel;
GwyDataLine *ecurve;
gchar buf[24];
gdouble S, s, Smax = 0.0;
ecurve = gwy_data_line_new(1, 1.0, FALSE);
if (args->mode == ENTROPY_VALUES) {
S = gwy_data_field_area_get_entropy_at_scales(dfield, ecurve,
mfield, args->masking,
0, 0,
dfield->xres,
dfield->yres,
0);
s = gwy_data_field_area_get_rms_mask(dfield,
mfield, args->masking,
0, 0, dfield->xres, dfield->yres);
Smax = ENTROPY_NORMAL + log(s);
}
else {
GwyDataField *xder = gwy_data_field_new_alike(dfield, FALSE);
GwyDataField *yder = gwy_data_field_new_alike(dfield, FALSE);
compute_slopes(controls->dfield,
args->fit_plane ? args->kernel_size : 0, xder, yder);
xder = fake_mask(xder, mfield, args->masking);
yder = fake_mask(yder, mfield, args->masking);
if (args->mode == ENTROPY_ANGLES)
transform_to_sphere(xder, yder);
S = gwy_data_field_get_entropy_2d_at_scales(xder, yder, ecurve, 0);
if (args->mode == ENTROPY_SLOPES) {
s = calculate_sigma2_2d(xder, yder);
Smax = ENTROPY_NORMAL_2D + log(s);
}
g_object_unref(xder);
g_object_unref(yder);
}
g_snprintf(buf, sizeof(buf), "%g", S);
gtk_label_set_text(GTK_LABEL(controls->entropy), buf);
if (args->mode != ENTROPY_ANGLES) {
g_snprintf(buf, sizeof(buf), "%g", Smax - S);
gtk_label_set_text(GTK_LABEL(controls->entropydef), buf);
}
else
gtk_label_set_text(GTK_LABEL(controls->entropydef), _("N.A."));
gmodel = gwy_graph_get_model(GWY_GRAPH(controls->graph));
gwy_graph_model_remove_all_curves(gmodel);
g_object_set(gmodel,
"axis-label-bottom", "log h",
"axis-label-left", "S",
"label-position", GWY_GRAPH_LABEL_NORTHWEST,
NULL);
if (gwy_data_line_get_min(ecurve) > -0.5*G_MAXDOUBLE) {
gcmodel = gwy_graph_curve_model_new();
g_object_set(gcmodel,
"description", _("Entropy at scales"),
"mode", GWY_GRAPH_CURVE_LINE_POINTS,
"color", gwy_graph_get_preset_color(0),
NULL);
gwy_graph_curve_model_set_data_from_dataline(gcmodel, ecurve, 0, 0);
gwy_graph_model_add_curve(gmodel, gcmodel);
g_object_unref(gcmodel);
}
if (S > -0.5*G_MAXDOUBLE) {
GwyDataLine *best = gwy_data_line_duplicate(ecurve);
gdouble *ydata = gwy_data_line_get_data(best);
guint i, res = gwy_data_line_get_res(best);
for (i = 0; i < res; i++)
ydata[i] = S;
gcmodel = gwy_graph_curve_model_new();
g_object_set(gcmodel,
"description", _("Best estimate"),
"mode", GWY_GRAPH_CURVE_LINE,
"color", gwy_graph_get_preset_color(1),
NULL);
gwy_graph_curve_model_set_data_from_dataline(gcmodel, best, 0, 0);
gwy_graph_model_add_curve(gmodel, gcmodel);
g_object_unref(gcmodel);
g_object_unref(best);
}
g_object_unref(ecurve);
zoom_in_changed(controls, GTK_TOGGLE_BUTTON(controls->zoom_in));
}
static gboolean
noise_synth_dialog(NoiseSynthArgs *args,
GwyDimensionArgs *dimsargs,
GwyContainer *data,
GwyDataField *dfield_template,
gint id)
{
GtkWidget *dialog, *table, *vbox, *hbox, *notebook, *label;
NoiseSynthControls controls;
GwyDataField *dfield;
GwyPixmapLayer *layer;
gboolean finished;
gint response;
gint row;
gwy_clear(&controls, 1);
controls.in_init = TRUE;
controls.args = args;
dialog = gtk_dialog_new_with_buttons(_("Random Noise"),
NULL, 0,
_("_Reset"), RESPONSE_RESET,
GTK_STOCK_CANCEL, GTK_RESPONSE_CANCEL,
GTK_STOCK_OK, GTK_RESPONSE_OK,
NULL);
gtk_dialog_set_default_response(GTK_DIALOG(dialog), GTK_RESPONSE_OK);
gwy_help_add_to_proc_dialog(GTK_DIALOG(dialog), GWY_HELP_DEFAULT);
controls.dialog = dialog;
hbox = gtk_hbox_new(FALSE, 2);
gtk_box_pack_start(GTK_BOX(GTK_DIALOG(dialog)->vbox), hbox,
FALSE, FALSE, 4);
vbox = gtk_vbox_new(FALSE, 4);
gtk_box_pack_start(GTK_BOX(hbox), vbox, FALSE, FALSE, 4);
controls.mydata = gwy_container_new();
dfield = gwy_data_field_new(PREVIEW_SIZE, PREVIEW_SIZE,
dimsargs->measure*PREVIEW_SIZE,
dimsargs->measure*PREVIEW_SIZE,
TRUE);
gwy_container_set_object_by_name(controls.mydata, "/0/data", dfield);
controls.noise = gwy_data_field_new_alike(dfield, FALSE);
if (dfield_template) {
gwy_app_sync_data_items(data, controls.mydata, id, 0, FALSE,
GWY_DATA_ITEM_PALETTE,
0);
controls.surface = gwy_synth_surface_for_preview(dfield_template,
PREVIEW_SIZE);
controls.zscale = gwy_data_field_get_rms(dfield_template);
}
controls.view = gwy_data_view_new(controls.mydata);
layer = gwy_layer_basic_new();
g_object_set(layer,
"data-key", "/0/data",
"gradient-key", "/0/base/palette",
NULL);
gwy_data_view_set_base_layer(GWY_DATA_VIEW(controls.view), layer);
gtk_box_pack_start(GTK_BOX(vbox), controls.view, FALSE, FALSE, 0);
gtk_box_pack_start(GTK_BOX(vbox),
gwy_synth_instant_updates_new(&controls,
&controls.update_now,
&controls.update,
&args->update),
FALSE, FALSE, 0);
g_signal_connect_swapped(controls.update_now, "clicked",
G_CALLBACK(preview), &controls);
gtk_box_pack_start(GTK_BOX(vbox),
gwy_synth_random_seed_new(&controls,
&controls.seed, &args->seed),
FALSE, FALSE, 0);
controls.randomize = gwy_synth_randomize_new(&args->randomize);
gtk_box_pack_start(GTK_BOX(vbox), controls.randomize, FALSE, FALSE, 0);
notebook = gtk_notebook_new();
gtk_box_pack_start(GTK_BOX(hbox), notebook, TRUE, TRUE, 4);
g_signal_connect_swapped(notebook, "switch-page",
G_CALLBACK(page_switched), &controls);
controls.dims = gwy_dimensions_new(dimsargs, dfield_template);
gtk_notebook_append_page(GTK_NOTEBOOK(notebook),
gwy_dimensions_get_widget(controls.dims),
gtk_label_new(_("Dimensions")));
if (controls.dims->add)
g_signal_connect_swapped(controls.dims->add, "toggled",
G_CALLBACK(noise_synth_invalidate), &controls);
table = gtk_table_new(6 + (dfield_template ? 1 : 0), 4, FALSE);
controls.table = GTK_TABLE(table);
gtk_table_set_row_spacings(controls.table, 2);
gtk_table_set_col_spacings(controls.table, 6);
gtk_container_set_border_width(GTK_CONTAINER(table), 4);
gtk_notebook_append_page(GTK_NOTEBOOK(notebook), table,
gtk_label_new(_("Generator")));
row = 0;
controls.distribution = distribution_selector_new(&controls);
gwy_table_attach_hscale(table, row, _("_Distribution:"), NULL,
GTK_OBJECT(controls.distribution),
GWY_HSCALE_WIDGET);
row++;
label = gtk_label_new(_("Direction:"));
gtk_misc_set_alignment(GTK_MISC(label), 0.0, 0.5);
gtk_table_attach(GTK_TABLE(table), label, 0, 1, row, row+1,
GTK_FILL, 0, 0, 0);
row++;
controls.direction
= gwy_radio_buttons_createl(G_CALLBACK(direction_type_changed),
&controls, args->direction,
_("S_ymmetrical"), NOISE_DIRECTION_BOTH,
_("One-sided _positive"), NOISE_DIRECTION_UP,
_("One-sided _negative"), NOISE_DIRECTION_DOWN,
NULL);
row = gwy_radio_buttons_attach_to_table(controls.direction,
GTK_TABLE(table), 3, row);
gtk_table_set_row_spacing(GTK_TABLE(table), row-1, 8);
row = gwy_synth_attach_height(&controls, row,
&controls.sigma, &args->sigma,
_("_RMS:"), NULL, &controls.sigma_units);
if (dfield_template) {
controls.sigma_init
= gtk_button_new_with_mnemonic(_("_Like Current Channel"));
g_signal_connect_swapped(controls.sigma_init, "clicked",
G_CALLBACK(sigma_init_clicked), &controls);
gtk_table_attach(GTK_TABLE(table), controls.sigma_init,
1, 3, row, row+1, GTK_FILL, 0, 0, 0);
row++;
}
gtk_widget_show_all(dialog);
controls.in_init = FALSE;
/* Must be done when widgets are shown, see GtkNotebook docs */
gtk_notebook_set_current_page(GTK_NOTEBOOK(notebook), args->active_page);
update_values(&controls);
noise_synth_invalidate(&controls);
finished = FALSE;
while (!finished) {
response = gtk_dialog_run(GTK_DIALOG(dialog));
switch (response) {
case GTK_RESPONSE_CANCEL:
case GTK_RESPONSE_DELETE_EVENT:
case GTK_RESPONSE_OK:
gtk_widget_destroy(dialog);
case GTK_RESPONSE_NONE:
finished = TRUE;
break;
case RESPONSE_RESET:
{
gboolean temp = args->update;
gint temp2 = args->active_page;
*args = noise_synth_defaults;
args->active_page = temp2;
args->update = temp;
}
controls.in_init = TRUE;
update_controls(&controls, args);
controls.in_init = FALSE;
if (args->update)
preview(&controls);
break;
default:
g_assert_not_reached();
break;
}
}
if (controls.sid) {
g_source_remove(controls.sid);
controls.sid = 0;
}
g_object_unref(controls.mydata);
gwy_object_unref(controls.surface);
gwy_object_unref(controls.noise);
gwy_dimensions_free(controls.dims);
return response == GTK_RESPONSE_OK;
}
static void
psdflp_do(const PSDFLPArgs *args, GwyDataField *dfield, GwyDataField *lpsdf)
{
enum { N = 4 };
GwyDataField *reout, *imout;
gint pxres, pyres, fxres, fyres;
gint i, j, fi, pi;
gdouble *ldata, *redata, *imdata;
gdouble *cosphi, *sinphi;
gdouble xreal, yreal, f0, f_max, b, p;
reout = gwy_data_field_new_alike(dfield, FALSE);
imout = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_2dfft(dfield, NULL, reout, imout,
args->window, GWY_TRANSFORM_DIRECTION_FORWARD,
GWY_INTERPOLATION_ROUND, /* Ignored */
TRUE, 1);
pxres = reout->xres;
pyres = reout->yres;
redata = gwy_data_field_get_data(reout);
imdata = gwy_data_field_get_data(imout);
for (i = 0; i < pxres*pyres; i++)
redata[i] = redata[i]*redata[i] + imdata[i]*imdata[i];
gwy_data_field_2dfft_humanize(reout);
gwy_data_field_filter_gaussian(reout, args->sigma);
for (i = 0; i < pxres*pyres; i++)
redata[i] = sqrt(redata[i]);
fxres = pxres/2;
fyres = pyres/2;
gwy_data_field_resample(lpsdf, fxres, fyres, GWY_INTERPOLATION_NONE);
ldata = gwy_data_field_get_data(lpsdf);
xreal = dfield->xreal;
yreal = dfield->yreal;
f0 = 2.0/MIN(xreal, yreal);
f_max = 0.5*MIN(pxres/xreal, pyres/yreal);
if (f_max <= f0) {
g_warning("Minimum frequency is not smaller than maximum frequency.");
}
b = log(f_max/f0)/fyres;
/* Incorporate some prefactors to sinphi[] and cosphi[], knowing that
* cosine is only ever used for x and sine for y frequencies. */
cosphi = g_new(gdouble, (N+1)*fxres);
sinphi = g_new(gdouble, (N+1)*fxres);
for (j = 0; j < fxres; j++) {
gdouble phi_from = 2.0*G_PI*j/fxres;
gdouble phi_to = 2.0*G_PI*(j + 1.0)/fxres;
for (pi = 0; pi <= N; pi++) {
gdouble phi = ((pi + 0.5)*phi_from + (N - 0.5 - pi)*phi_to)/N;
cosphi[j*(N+1) + pi] = cos(phi)*xreal;
sinphi[j*(N+1) + pi] = sin(phi)*yreal;
}
}
for (i = 0; i < fyres; i++) {
gdouble f_from = f0*exp(b*i);
gdouble f_to = f0*exp(b*(i + 1.0));
for (j = 0; j < fxres; j++) {
const gdouble *cosphi_j = cosphi + j*(N+1);
const gdouble *sinphi_j = sinphi + j*(N+1);
guint n = 0;
gdouble s = 0.0;
for (fi = 0; fi <= N; fi++) {
gdouble f = ((fi + 0.5)*f_from + (N - 0.5 - fi)*f_to)/N;
for (pi = 0; pi <= N; pi++) {
gdouble x = f*cosphi_j[pi] + pxres/2.0,
y = f*sinphi_j[pi] + pyres/2.0;
if (G_UNLIKELY(x < 0.5
|| y < 0.5
|| x > pxres - 1.5
|| y > pyres - 1.5))
continue;
p = gwy_data_field_get_dval(reout, x, y,
GWY_INTERPOLATION_SCHAUM);
s += p;
n++;
}
}
if (!n)
n = 1;
ldata[i*fxres + j] = 2.0*G_PI/fxres * s/n*(f_to - f_from);
}
}
g_object_unref(imout);
g_object_unref(reout);
gwy_data_field_set_xreal(lpsdf, 2.0*G_PI);
gwy_data_field_set_xoffset(lpsdf, 0.0);
gwy_data_field_set_yreal(lpsdf, log(f_max/f0));
gwy_data_field_set_yoffset(lpsdf, log(f0));
gwy_si_unit_set_from_string(gwy_data_field_get_si_unit_xy(lpsdf), "");
gwy_si_unit_set_from_string(gwy_data_field_get_si_unit_z(lpsdf), "");
gwy_data_field_normalize(lpsdf);
}
static gint
fill_data_fields(MProFile *mprofile,
const guchar *buffer)
{
GwyDataField *dfield, *vpmask;
gdouble *data, *mask;
gdouble xreal, yreal, q;
const guchar *p;
guint n, id, i, j, ndata;
ndata = 0;
mprofile->intensity_data = NULL;
mprofile->intensity_mask = NULL;
mprofile->phase_data = NULL;
mprofile->phase_mask = NULL;
p = buffer + mprofile->header_size;
/* Intensity data */
n = mprofile->intens_xres * mprofile->intens_yres;
/* Enorce consistency */
if (!n && mprofile->nbuckets) {
g_warning("nbuckets > 0, but intensity data have zero dimension");
mprofile->nbuckets = 0;
}
if (mprofile->nbuckets) {
const guint16 *d16;
mprofile->intensity_data = g_new(GwyDataField*, mprofile->nbuckets);
mprofile->intensity_mask = g_new(GwyDataField*, mprofile->nbuckets);
q = mprofile->data_inverted ? -1.0 : 1.0;
if (mprofile->camera_res) {
xreal = mprofile->intens_xres * mprofile->camera_res;
yreal = mprofile->intens_yres * mprofile->camera_res;
}
else {
/* whatever */
xreal = mprofile->intens_xres;
yreal = mprofile->intens_yres;
}
for (id = 0; id < mprofile->nbuckets; id++) {
ndata++;
dfield = gwy_data_field_new(mprofile->intens_xres,
mprofile->intens_yres,
xreal, yreal,
FALSE);
vpmask = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_fill(vpmask, 1.0);
data = gwy_data_field_get_data(dfield);
mask = gwy_data_field_get_data(vpmask);
d16 = (const guint16*)p;
for (i = 0; i < mprofile->intens_yres; i++) {
for (j = 0; j < mprofile->intens_xres; j++) {
guint v16 = GUINT16_FROM_BE(*d16);
if (v16 >= 65412) {
mask[i*mprofile->intens_xres + j] = 0.0;
}
else
*data = q*v16;
d16++;
data++;
}
}
set_units(dfield, mprofile, "");
if (!gwy_app_channel_remove_bad_data(dfield, vpmask))
gwy_object_unref(vpmask);
mprofile->intensity_data[id] = dfield;
mprofile->intensity_mask[id] = vpmask;
p += sizeof(guint16)*n;
}
}
/* Phase data */
n = mprofile->phase_xres * mprofile->phase_yres;
if (n) {
const gint32 *d32;
gint32 d;
ndata++;
i = 4096;
if (mprofile->phase_res == 1)
i = 32768;
q = mprofile->scale_factor * mprofile->obliquity_factor
* mprofile->wavelength_in/i;
if (mprofile->data_inverted)
q = -q;
gwy_debug("q: %g", q);
if (mprofile->camera_res) {
xreal = mprofile->phase_xres * mprofile->camera_res;
yreal = mprofile->phase_yres * mprofile->camera_res;
}
else {
/* whatever */
xreal = mprofile->phase_xres;
yreal = mprofile->phase_yres;
}
dfield = gwy_data_field_new(mprofile->phase_xres,
mprofile->phase_yres,
xreal, yreal,
FALSE);
vpmask = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_fill(vpmask, 1.0);
data = gwy_data_field_get_data(dfield);
mask = gwy_data_field_get_data(vpmask);
d32 = (const gint32*)p;
for (i = 0; i < mprofile->phase_yres; i++) {
for (j = 0; j < mprofile->phase_xres; j++) {
d = GINT32_FROM_BE(*d32);
if (d >= 2147483640) {
mask[i*mprofile->phase_xres + j] = 0.0;
}
else
*data = q*d;
d32++;
data++;
}
}
set_units(dfield, mprofile, "m");
if (!gwy_app_channel_remove_bad_data(dfield, vpmask))
gwy_object_unref(vpmask);
mprofile->phase_data = dfield;
mprofile->phase_mask = vpmask;
p += sizeof(gint32)*n;
}
return ndata;
}
static void
tip_model_dialog(TipModelArgs *args)
{
enum {
RESPONSE_RESET = 1,
RESPONSE_PREVIEW = 2
};
GtkWidget *dialog, *table, *hbox, *spin;
TipModelControls controls;
GwyPixmapLayer *layer;
GwyDataField *dfield;
GwySIUnit *unit;
GQuark quark;
gint response, row;
dialog = gtk_dialog_new_with_buttons(_("Model Tip"), NULL, 0, NULL);
gtk_dialog_add_action_widget(GTK_DIALOG(dialog),
gwy_stock_like_button_new(_("_Update"),
GTK_STOCK_EXECUTE),
RESPONSE_PREVIEW);
gtk_dialog_add_button(GTK_DIALOG(dialog), _("_Reset"), RESPONSE_RESET);
gtk_dialog_add_button(GTK_DIALOG(dialog),
GTK_STOCK_CANCEL, GTK_RESPONSE_CANCEL);
gtk_dialog_add_button(GTK_DIALOG(dialog),
GTK_STOCK_OK, GTK_RESPONSE_OK);
gtk_dialog_set_has_separator(GTK_DIALOG(dialog), FALSE);
gtk_dialog_set_default_response(GTK_DIALOG(dialog), GTK_RESPONSE_OK);
hbox = gtk_hbox_new(FALSE, 3);
gtk_box_pack_start(GTK_BOX(GTK_DIALOG(dialog)->vbox), hbox,
FALSE, FALSE, 4);
controls.args = args;
controls.vxres = 200;
controls.vyres = 200;
/* set up initial tip field */
quark = gwy_app_get_data_key_for_id(args->object.id);
dfield = GWY_DATA_FIELD(gwy_container_get_object(args->object.data, quark));
controls.tip = gwy_data_field_new_alike(dfield, TRUE);
gwy_data_field_resample(controls.tip, controls.vxres, controls.vyres,
GWY_INTERPOLATION_NONE);
gwy_data_field_clear(controls.tip);
/*set up data of rescaled image of the tip*/
controls.vtip = gwy_container_new();
gwy_app_sync_data_items(args->object.data, controls.vtip,
args->object.id, 0, FALSE,
GWY_DATA_ITEM_PALETTE, 0);
dfield = gwy_data_field_new_alike(controls.tip, TRUE);
gwy_container_set_object_by_name(controls.vtip, "/0/data", dfield);
g_object_unref(dfield);
/* set up resampled view */
controls.view = gwy_data_view_new(controls.vtip);
layer = gwy_layer_basic_new();
gwy_pixmap_layer_set_data_key(layer, "/0/data");
gwy_layer_basic_set_gradient_key(GWY_LAYER_BASIC(layer), "/0/base/palette");
gwy_data_view_set_base_layer(GWY_DATA_VIEW(controls.view), layer);
/* set up tip model controls */
gtk_box_pack_start(GTK_BOX(hbox), controls.view, FALSE, FALSE, 4);
table = gtk_table_new(6, 4, FALSE);
gtk_table_set_row_spacings(GTK_TABLE(table), 2);
gtk_table_set_col_spacings(GTK_TABLE(table), 6);
gtk_container_set_border_width(GTK_CONTAINER(table), 4);
gtk_box_pack_start(GTK_BOX(hbox), table, FALSE, FALSE, 4);
row = 0;
controls.type = create_preset_menu(G_CALLBACK(tip_type_cb),
&controls, args->type);
gwy_table_attach_hscale(table, row, _("Tip _type:"), NULL,
GTK_OBJECT(controls.type), GWY_HSCALE_WIDGET);
row++;
controls.nsides = gtk_adjustment_new(args->nsides, 3, 24, 1, 5, 0);
gwy_table_attach_hscale(table, row, _("_Number of sides:"), NULL,
controls.nsides, 0);
row++;
controls.angle = gtk_adjustment_new(args->angle, 0.1, 89.9, 0.1, 1, 0);
spin = gwy_table_attach_hscale(table, row, _("Tip _slope:"), _("deg"),
controls.angle, 0);
gtk_spin_button_set_digits(GTK_SPIN_BUTTON(spin), 2);
row++;
controls.theta = gtk_adjustment_new(args->theta, 0, 360, 0.1, 1, 0);
spin = gwy_table_attach_hscale(table, row, _("Tip _rotation:"), _("deg"),
controls.theta, 0);
gtk_spin_button_set_digits(GTK_SPIN_BUTTON(spin), 2);
row++;
controls.radius = gtk_adjustment_new(1.0, 0.01, 1000.0, 0.01, 1.0, 0.0);
controls.radius_spin = gtk_spin_button_new(GTK_ADJUSTMENT(controls.radius),
0.1, 2);
gtk_table_attach(GTK_TABLE(table), controls.radius_spin,
2, 3, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
controls.radius_label = gtk_label_new_with_mnemonic(_("Tip _apex radius:"));
gtk_misc_set_alignment(GTK_MISC(controls.radius_label), 0.0, 0.5);
gtk_label_set_mnemonic_widget(GTK_LABEL(controls.radius_label),
controls.radius_spin);
gtk_table_attach(GTK_TABLE(table), controls.radius_label,
0, 1, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
unit = gwy_data_field_get_si_unit_xy(dfield);
controls.radius_unit
= gwy_combo_box_metric_unit_new(G_CALLBACK(radius_changed_cb),
&controls,
-12, -3, unit, -9);
gtk_table_attach(GTK_TABLE(table), controls.radius_unit,
3, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
g_signal_connect(controls.radius, "value-changed",
G_CALLBACK(radius_changed_cb), &controls);
row++;
controls.labsize = gtk_label_new(NULL);
gtk_misc_set_alignment(GTK_MISC(controls.labsize), 0.0, 0.5);
gtk_table_attach(GTK_TABLE(table), controls.labsize,
0, 3, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
row++;
controls.tipdone = FALSE;
tip_model_dialog_update_controls(&controls, args);
preview(&controls, args);
gtk_widget_show_all(dialog);
do {
response = gtk_dialog_run(GTK_DIALOG(dialog));
switch (response) {
case GTK_RESPONSE_CANCEL:
case GTK_RESPONSE_DELETE_EVENT:
tip_model_dialog_update_values(&controls, args);
gtk_widget_destroy(dialog);
tip_model_dialog_abandon(&controls);
case GTK_RESPONSE_NONE:
return;
break;
case GTK_RESPONSE_OK:
tip_model_do(args, &controls);
break;
case RESPONSE_RESET:
args->nsides = tip_model_defaults.nsides;
args->angle = tip_model_defaults.angle;
args->radius = tip_model_defaults.radius;
args->theta = tip_model_defaults.theta;
args->type = tip_model_defaults.type;
tip_model_dialog_update_controls(&controls, args);
break;
case RESPONSE_PREVIEW:
tip_model_dialog_update_values(&controls, args);
preview(&controls, args);
break;
default:
g_assert_not_reached();
break;
}
} while (response != GTK_RESPONSE_OK);
tip_model_dialog_update_values(&controls, args);
gtk_widget_destroy(dialog);
tip_model_dialog_abandon(&controls);
}
static GwyContainer*
int_load(const gchar *filename,
G_GNUC_UNUSED GwyRunType mode,
GError **error)
{
GwyContainer *container = NULL, *meta;
GwyDataField *dfield = NULL, *mfield = NULL;
CodeVGridDataType type;
gchar *line, *p, *comment, *end, *buffer = NULL;
const gchar *unit, *title;
gchar **fields = NULL;
gsize size;
GError *err = NULL;
gdouble xreal, yreal;
gint i, xres, yres, no_data_value = 32767;
guint fi;
gdouble scale_size, wavelength, q = 1.0, x_scale = 1.0;
gboolean nearest_neighbour = FALSE;
gdouble *data, *mdata;
if (!g_file_get_contents(filename, &buffer, &size, &err)) {
err_GET_FILE_CONTENTS(error, &err);
goto fail;
}
/* Skip comments. */
p = buffer;
for (line = gwy_str_next_line(&p);
line && line[0] == '!';
line = gwy_str_next_line(&p)) {
gwy_debug("comment <%s>", line);
}
if (!line) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
/* The title. */
comment = line;
if (!(line = gwy_str_next_line(&p))) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
gwy_debug("comment <%s>", comment);
fields = split_line_in_place(line);
if (!fields
|| g_strv_length(fields) < 8
|| !gwy_strequal(fields[0], "GRD")
|| !(xres = atoi(fields[1]))
|| !(yres = atoi(fields[2]))
|| !(type = gwy_stramong(fields[3],
"SUR", "WFR", "FIL", "THV", "BIR", "CAO",
NULL))
|| !gwy_strequal(fields[4], "WVL")
|| (!(wavelength = g_ascii_strtod(fields[5], &end))
&& end == fields[5])) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
gwy_debug("type %u (%s)", type, fields[3]);
gwy_debug("xres %d, yres %d", xres, yres);
gwy_debug("wavelength %g", wavelength);
fi = 6;
if (gwy_strequal(fields[fi], "NNB")) {
nearest_neighbour = TRUE;
fi++;
}
gwy_debug("nearest_neighbour %d", nearest_neighbour);
if (!fields[fi] || !gwy_strequal(fields[fi], "SSZ")) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
fi++;
if (!(scale_size = g_ascii_strtod(fields[fi], &end)) && end == fields[fi]) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
gwy_debug("scale_size %g", scale_size);
if (!scale_size) {
g_warning("Zero SSZ, fixing to 1.0");
scale_size = 1.0;
}
fi++;
if (fields[fi] && gwy_strequal(fields[fi], "NDA")) {
fi++;
if (!fields[fi]) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
no_data_value = atoi(fields[fi]);
fi++;
}
gwy_debug("no_data_value %d", no_data_value);
if (fields[fi] && gwy_strequal(fields[fi], "XSC")) {
fi++;
if (!fields[fi]) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
if (!(x_scale = g_ascii_strtod(fields[fi], &end))
&& end == fields[fi]) {
err_FILE_TYPE(error, "Code V INT");
goto fail;
}
fi++;
}
gwy_debug("x_scale %g", x_scale);
if (!x_scale) {
g_warning("Zero XSC, fixing to 1.0");
x_scale = 1.0;
}
/* There may be more stuff but we do not know anything about it. */
if (err_DIMENSION(error, xres) || err_DIMENSION(error, yres))
goto fail;
yreal = 1.0;
xreal = x_scale*yreal;
dfield = gwy_data_field_new(xres, yres, xreal, yreal, TRUE);
if (type == CODEV_INT_SURFACE_DEFORMATION) {
q = 1e-6*wavelength/scale_size;
unit = "m";
title = "Surface";
}
else if (type == CODEV_INT_WAVEFRONT_DEFORMATION) {
q = 1e-6*wavelength/scale_size;
unit = "m";
title = "Wavefront";
}
else {
g_warning("Don't know how to convert this grid data type to physical "
"units.");
title = fields[3];
}
gwy_si_unit_set_from_string(gwy_data_field_get_si_unit_z(dfield), unit);
mfield = gwy_data_field_new_alike(dfield, TRUE);
data = gwy_data_field_get_data(dfield);
mdata = gwy_data_field_get_data(mfield);
for (i = 0; i < xres*yres; i++, p = end) {
gint value = strtol(p, &end, 10);
if (value != no_data_value && (type != CODEV_INT_INTENSITY_FILTER
|| value >= 0)) {
mdata[i] = 1.0;
data[i] = q*value;
}
}
if (!gwy_app_channel_remove_bad_data(dfield, mfield))
gwy_object_unref(mfield);
container = gwy_container_new();
/*
gwy_data_field_invert(dfield, TRUE, FALSE, FALSE);
from F. Riguet : apparently no flip is needed (the raw data import module
gives the correct orientation without further flipping)
*/
gwy_container_set_object(container, gwy_app_get_data_key_for_id(0), dfield);
g_object_unref(dfield);
gwy_app_channel_check_nonsquare(container, 0);
gwy_container_set_string_by_name(container, "/0/data/title",
g_strdup(title));
if (mfield) {
/*
gwy_data_field_invert(mfield, FALSE, TRUE, FALSE);
*/
gwy_container_set_object(container, gwy_app_get_mask_key_for_id(0),
mfield);
g_object_unref(mfield);
}
meta = gwy_container_new();
gwy_container_set_string_by_name(meta, "Comment", g_strdup(comment));
gwy_container_set_string_by_name(meta, "Interpolation",
g_strdup(nearest_neighbour
? "NNB" : "Linear"));
gwy_container_set_string_by_name(meta, "Wavelength",
g_strdup_printf("%g μm", wavelength));
gwy_container_set_object_by_name(container, "/0/meta", meta);
g_object_unref(meta);
gwy_file_channel_import_log_add(container, 0, NULL, filename);
fail:
g_free(fields);
g_free(buffer);
return container;
}
static void
level_grains_do(const LevelGrainsArgs *args,
GwyContainer *data, GQuark dquark, gint id,
GwyDataField *dfield, GwyDataField *mfield)
{
GwyDataField *buffer, *background, *invmask;
gdouble error, cor, maxerr, lastfrac, frac, starterr;
gdouble *heights, *bgdata;
gint *grains;
gboolean cancelled = FALSE;
gint i, xres, yres, ngrains;
xres = gwy_data_field_get_xres(mfield);
yres = gwy_data_field_get_yres(mfield);
grains = g_new0(gint, xres*yres);
ngrains = gwy_data_field_number_grains(mfield, grains);
if (!ngrains) {
g_free(grains);
return;
}
heights = g_new(gdouble, ngrains+1);
gwy_data_field_grains_get_values(dfield, heights, ngrains, grains,
args->base);
heights[0] = 0.0;
background = gwy_data_field_new_alike(dfield, FALSE);
bgdata = gwy_data_field_get_data(background);
for (i = 0; i < xres*yres; i++)
bgdata[i] = -heights[grains[i]];
invmask = gwy_data_field_duplicate(mfield);
gwy_data_field_multiply(invmask, -1.0);
gwy_data_field_add(invmask, 1.0);
maxerr = gwy_data_field_get_rms(dfield)/1.0e4;
gwy_app_wait_start(gwy_app_find_window_for_channel(data, id),
_("Laplace interpolation..."));
g_free(heights);
g_free(grains);
buffer = gwy_data_field_new_alike(background, TRUE);
gwy_data_field_correct_average(background, invmask);
cor = 0.2;
error = 0.0;
lastfrac = 0.0;
starterr = 0.0;
for (i = 0; i < 5000; i++) {
gwy_data_field_correct_laplace_iteration(background, invmask, buffer,
cor, &error);
if (error < maxerr)
break;
if (!i)
starterr = error;
frac = log(error/starterr)/log(maxerr/starterr);
if ((i/(gdouble)(5000)) > frac)
frac = i/(gdouble)(5000);
if (lastfrac > frac)
frac = lastfrac;
if (!gwy_app_wait_set_fraction(frac)) {
cancelled = TRUE;
break;
}
lastfrac = frac;
}
gwy_app_wait_finish();
if (!cancelled) {
gwy_data_field_invert(background, FALSE, FALSE, TRUE);
gwy_app_undo_qcheckpointv(data, 1, &dquark);
gwy_data_field_subtract_fields(dfield, dfield, background);
gwy_data_field_data_changed(dfield);
if (args->do_extract) {
gint newid;
newid = gwy_app_data_browser_add_data_field(background, data, TRUE);
gwy_app_sync_data_items(data, data, id, newid, FALSE,
GWY_DATA_ITEM_GRADIENT,
0);
gwy_app_set_data_field_title(data, newid, _("Background"));
}
}
g_object_unref(buffer);
g_object_unref(invmask);
g_object_unref(background);
}
static void
tip_blind_dialog(TipBlindArgs *args)
{
GtkWidget *dialog, *table, *hbox, *vbox, *label;
GwyContainer *data;
GwyGraphModel *gmodel;
GwyGraphArea *area;
TipBlindControls controls;
GwyPixmapLayer *layer;
GwyDataField *dfield;
GQuark quark;
GwySIUnit *unit;
gint response, row;
dialog = gtk_dialog_new_with_buttons(_("Blind Tip Estimation"), NULL, 0,
_("Run _Partial"), RESPONSE_ESTIMATE,
_("Run _Full"), RESPONSE_REFINE,
_("_Reset Tip"), RESPONSE_RESET,
GTK_STOCK_CANCEL, GTK_RESPONSE_CANCEL,
GTK_STOCK_OK, GTK_RESPONSE_OK,
NULL);
gtk_dialog_set_default_response(GTK_DIALOG(dialog), GTK_RESPONSE_OK);
gwy_help_add_to_proc_dialog(GTK_DIALOG(dialog), GWY_HELP_DEFAULT);
controls.args = args;
controls.in_update = TRUE;
controls.good_tip = FALSE;
controls.dialog = dialog;
gtk_dialog_set_response_sensitive(GTK_DIALOG(dialog), GTK_RESPONSE_OK,
controls.good_tip);
hbox = gtk_hbox_new(FALSE, 4);
gtk_box_pack_start(GTK_BOX(GTK_DIALOG(dialog)->vbox), hbox,
FALSE, FALSE, 4);
controls.vxres = 240;
controls.vyres = 240;
controls.oldnstripes = args->nstripes;
/* set initial tip properties */
data = gwy_app_data_browser_get(args->source.datano);
quark = gwy_app_get_data_key_for_id(args->source.id);
dfield = GWY_DATA_FIELD(gwy_container_get_object(data, quark));
controls.tip = gwy_data_field_new_alike(dfield, TRUE);
gwy_data_field_resample(controls.tip, args->xres, args->yres,
GWY_INTERPOLATION_NONE);
gwy_data_field_clear(controls.tip);
/* set up data of rescaled image of the tip */
controls.vtip = gwy_container_new();
gwy_app_sync_data_items(data, controls.vtip,
args->source.id, 0, FALSE,
GWY_DATA_ITEM_PALETTE,
0);
dfield = gwy_data_field_new_alike(controls.tip, TRUE);
gwy_data_field_resample(dfield, controls.vxres, controls.vyres,
GWY_INTERPOLATION_ROUND);
gwy_container_set_object_by_name(controls.vtip, "/0/data", dfield);
g_object_unref(dfield);
/* set up rescaled image of the tip */
vbox = gtk_vbox_new(FALSE, 0);
gtk_box_pack_start(GTK_BOX(hbox), vbox, FALSE, FALSE, 4);
controls.view = gwy_data_view_new(controls.vtip);
layer = gwy_layer_basic_new();
gwy_pixmap_layer_set_data_key(layer, "/0/data");
gwy_layer_basic_set_gradient_key(GWY_LAYER_BASIC(layer), "/0/base/palette");
gwy_data_view_set_base_layer(GWY_DATA_VIEW(controls.view), layer);
/* set up tip estimation controls */
gtk_box_pack_start(GTK_BOX(vbox), controls.view, FALSE, FALSE, 0);
gmodel = gwy_graph_model_new();
controls.graph = gwy_graph_new(gmodel);
g_object_unref(gmodel);
gwy_axis_set_visible(gwy_graph_get_axis(GWY_GRAPH(controls.graph),
GTK_POS_LEFT),
FALSE);
gwy_axis_set_visible(gwy_graph_get_axis(GWY_GRAPH(controls.graph),
GTK_POS_BOTTOM),
FALSE);
area = GWY_GRAPH_AREA(gwy_graph_get_area(GWY_GRAPH(controls.graph)));
gtk_widget_set_no_show_all(gwy_graph_area_get_label(area), TRUE);
g_signal_connect_after(gwy_graph_area_get_label(area), "map",
G_CALLBACK(gtk_widget_hide), NULL);
gtk_box_pack_start(GTK_BOX(vbox), controls.graph, TRUE, TRUE, 0);
table = gtk_table_new(13, 4, FALSE);
gtk_table_set_row_spacings(GTK_TABLE(table), 2);
gtk_table_set_col_spacings(GTK_TABLE(table), 6);
gtk_container_set_border_width(GTK_CONTAINER(table), 4);
gtk_box_pack_start(GTK_BOX(hbox), table, FALSE, FALSE, 4);
row = 0;
controls.data = gwy_data_chooser_new_channels();
gwy_data_chooser_set_filter(GWY_DATA_CHOOSER(controls.data),
tip_blind_source_filter, &args->orig, NULL);
gwy_data_chooser_set_active_id(GWY_DATA_CHOOSER(controls.data),
&args->source);
g_signal_connect(controls.data, "changed",
G_CALLBACK(data_changed), &args->source);
gwy_table_attach_hscale(table, row, _("Related _data:"), NULL,
GTK_OBJECT(controls.data), GWY_HSCALE_WIDGET);
gtk_table_set_row_spacing(GTK_TABLE(table), row, 8);
row++;
label = gtk_label_new(_("Estimated Tip Size"));
gtk_misc_set_alignment(GTK_MISC(label), 0.0, 0.5);
gtk_table_attach(GTK_TABLE(table), label,
0, 4, row, row+1, GTK_FILL, 0, 0, 0);
row++;
controls.xres = gtk_adjustment_new(args->xres, MIN_RES, MAX_RES, 1, 10, 0);
gwy_table_attach_hscale(table, row, _("_Width:"), "px", controls.xres, 0);
g_object_set_data(G_OBJECT(controls.xres), "controls", &controls);
g_signal_connect(controls.xres, "value-changed",
G_CALLBACK(width_changed), &controls);
row++;
controls.yres = gtk_adjustment_new(args->yres, MIN_RES, MAX_RES, 1, 10, 0);
gwy_table_attach_hscale(table, row, _("_Height:"), "px", controls.yres, 0);
g_object_set_data(G_OBJECT(controls.yres), "controls", &controls);
g_signal_connect(controls.yres, "value-changed",
G_CALLBACK(height_changed), &controls);
row++;
controls.same_resolution
= gtk_check_button_new_with_mnemonic(_("_Same resolution"));
gtk_table_attach(GTK_TABLE(table), controls.same_resolution,
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.same_resolution),
args->same_resolution);
g_signal_connect(controls.same_resolution, "toggled",
G_CALLBACK(same_resolution_changed), &controls);
gtk_table_set_row_spacing(GTK_TABLE(table), row, 8);
row++;
gtk_table_attach(GTK_TABLE(table), gwy_label_new_header(_("Options")),
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
row++;
controls.threshold = gtk_adjustment_new(1.0, 0.01, 1000.0, 0.01, 1.0, 0.0);
controls.threshold_spin
= gtk_spin_button_new(GTK_ADJUSTMENT(controls.threshold), 0.1, 2);
gtk_table_attach(GTK_TABLE(table), controls.threshold_spin,
2, 3, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
label = gtk_label_new_with_mnemonic(_("Noise suppression t_hreshold:"));
gtk_misc_set_alignment(GTK_MISC(label), 0.0, 0.5);
gtk_label_set_mnemonic_widget(GTK_LABEL(label), controls.threshold_spin);
gtk_table_attach(GTK_TABLE(table), label,
0, 2, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
unit = gwy_data_field_get_si_unit_z(dfield);
controls.threshold_unit
= gwy_combo_box_metric_unit_new(G_CALLBACK(thresh_changed),
&controls,
-12, -3, unit, -9);
gtk_table_attach(GTK_TABLE(table), controls.threshold_unit,
3, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
g_signal_connect(controls.threshold, "value-changed",
G_CALLBACK(thresh_changed), &controls);
sci_entry_set_value(GTK_ADJUSTMENT(controls.threshold),
GTK_COMBO_BOX(controls.threshold_unit),
args->thresh);
row++;
controls.boundaries
= gtk_check_button_new_with_mnemonic(_("Use _boundaries"));
gtk_table_attach(GTK_TABLE(table), controls.boundaries,
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.boundaries),
args->use_boundaries);
g_signal_connect(controls.boundaries, "toggled",
G_CALLBACK(bound_changed), args);
gtk_table_set_row_spacing(GTK_TABLE(table), row, 8);
row++;
gtk_table_attach(GTK_TABLE(table), gwy_label_new_header(_("Stripes")),
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
row++;
controls.nstripes = gtk_adjustment_new(args->nstripes,
MIN_STRIPES, MAX_STRIPES, 1, 10, 0);
gwy_table_attach_hscale(table, row, _("_Split to stripes:"), NULL,
controls.nstripes, GWY_HSCALE_CHECK);
controls.split_to_stripes = gwy_table_hscale_get_check(controls.nstripes);
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.split_to_stripes),
!args->split_to_stripes);
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.split_to_stripes),
args->split_to_stripes);
g_signal_connect(controls.split_to_stripes, "toggled",
G_CALLBACK(split_to_stripes_changed), &controls);
g_signal_connect(controls.nstripes, "value-changed",
G_CALLBACK(nstripes_changed), &controls);
row++;
controls.stripeno = gtk_adjustment_new(1, 1, args->nstripes, 1, 10, 0);
gwy_table_attach_hscale(table, row, _("_Preview stripe:"), NULL,
controls.stripeno, GWY_HSCALE_DEFAULT);
g_signal_connect(controls.stripeno, "value-changed",
G_CALLBACK(stripeno_changed), &controls);
row++;
controls.plot_size_graph
= gtk_check_button_new_with_mnemonic(_("Plot size _graph"));
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.plot_size_graph),
args->plot_size_graph);
gtk_table_attach(GTK_TABLE(table), controls.plot_size_graph,
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
g_signal_connect(controls.plot_size_graph, "toggled",
G_CALLBACK(plot_size_graph_changed), &controls);
row++;
controls.create_images
= gtk_check_button_new_with_mnemonic(_("Create tip i_mages"));
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(controls.create_images),
args->create_images);
gtk_table_attach(GTK_TABLE(table), controls.create_images,
0, 4, row, row+1, GTK_EXPAND | GTK_FILL, 0, 0, 0);
g_signal_connect(controls.create_images, "toggled",
G_CALLBACK(create_images_changed), &controls);
row++;
controls.tipdone = FALSE;
controls.in_update = FALSE;
split_to_stripes_changed(GTK_TOGGLE_BUTTON(controls.split_to_stripes),
&controls);
gtk_widget_show_all(dialog);
do {
response = gtk_dialog_run(GTK_DIALOG(dialog));
switch (response) {
case GTK_RESPONSE_CANCEL:
case GTK_RESPONSE_DELETE_EVENT:
gtk_widget_destroy(dialog);
case GTK_RESPONSE_NONE:
tip_blind_dialog_abandon(&controls);
tip_blind_save_args(gwy_app_settings_get(), args);
return;
break;
case GTK_RESPONSE_OK:
tip_blind_save_args(gwy_app_settings_get(), args);
tip_blind_do(&controls, args);
break;
case RESPONSE_RESET:
reset(&controls, args);
break;
case RESPONSE_ESTIMATE:
tip_blind_run(&controls, args, FALSE);
break;
case RESPONSE_REFINE:
tip_blind_run(&controls, args, TRUE);
break;
default:
g_assert_not_reached();
break;
}
} while (response != GTK_RESPONSE_OK);
gtk_widget_destroy(dialog);
tip_blind_dialog_abandon(&controls);
return;
}
static GwyDataField*
sensofar_read_data_field(SensofarDataDesc *data_desc,
GwyDataField **maskfield,
const guchar **p,
gsize size,
GError **error)
{
GwyDataField *dfield, *mfield;
guint xres, yres, i, j, mcount;
GwySIUnit *units = NULL;
gdouble *data, *mdata;
if (maskfield)
*maskfield = NULL;
yres = gwy_get_guint32_le(p);
xres = gwy_get_guint32_le(p);
gwy_debug("Data size: %dx%d", xres, yres);
if (err_SIZE_MISMATCH(error, xres*yres*sizeof(gfloat),
size - 2*sizeof(guint32), FALSE))
return NULL;
if (err_DIMENSION(error, xres) || err_DIMENSION(error, yres))
return NULL;
if (!((data_desc->axes_config.mppx
= fabs(data_desc->axes_config.mppx)) > 0)) {
g_warning("Real x size is 0.0, fixing to 1.0");
data_desc->axes_config.mppx = 1.0;
}
if (!((data_desc->axes_config.mppy
= fabs(data_desc->axes_config.mppy)) > 0)) {
g_warning("Real y size is 0.0, fixing to 1.0");
data_desc->axes_config.mppy = 1.0;
}
dfield = gwy_data_field_new(xres, yres,
data_desc->axes_config.mppx * xres * Micrometer,
data_desc->axes_config.mppy * yres * Micrometer,
FALSE);
units = gwy_si_unit_new("m"); // values are in um only
gwy_data_field_set_si_unit_xy(dfield, units);
g_object_unref(units);
units = gwy_si_unit_new("m");
gwy_data_field_set_si_unit_z(dfield, units);
g_object_unref(units);
mfield = gwy_data_field_new_alike(dfield, FALSE);
gwy_data_field_fill(mfield, 1.0);
data = gwy_data_field_get_data(dfield);
mdata = gwy_data_field_get_data(mfield);
for (i = 0; i < yres; i++) {
for (j = 0; j < xres; j++) {
gdouble v = gwy_get_gfloat_le(p);
if (v == 1000001.0)
mdata[i*xres + j] = 0.0;
else
data[i*xres + j] = v*Micrometer;
}
}
gwy_debug("Offset: %g %g",
data_desc->axes_config.x_0, data_desc->axes_config.y_0);
//FIXME: offset later, support of offset determined by version?
//gwy_data_field_set_xoffset(d, pow10(power10)*data_desc.axes_config.x_0);
//gwy_data_field_set_yoffset(d, pow10(power10)*data_desc.axes_config.y_0);
mcount = gwy_app_channel_remove_bad_data(dfield, mfield);
if (maskfield && mcount)
*maskfield = mfield;
else
g_object_unref(mfield);
return dfield;
}
/**
* gwy_data_field_correlate:
* @data_field: A data field.
* @kernel_field: Correlation kernel.
* @score: Data field to store correlation scores to.
* @method: Correlation score calculation method.
*
* Computes correlation score for all positions in a data field.
*
* Correlation score is compute for all points in data field @data_field
* and full size of correlation kernel @kernel_field.
*
* The points in @score correspond to centers of kernel. More precisely, the
* point ((@kxres-1)/2, (@kyres-1)/2) in @score corresponds to kernel field
* top left corner coincident with data field top left corner. Points outside
* the area where the kernel field fits into the data field completely are
* set to -1 for %GWY_CORRELATION_NORMAL.
**/
void
gwy_data_field_correlate(GwyDataField *data_field, GwyDataField *kernel_field,
GwyDataField *score, GwyCorrelationType method)
{
gint xres, yres, kxres, kyres, i, j, k, fftxres, fftyres;
GwyDataField *data_in_re, *data_out_re, *data_out_im;
GwyDataField *kernel_in_re, *kernel_out_re, *kernel_out_im;
gdouble norm;
g_return_if_fail(data_field != NULL && kernel_field != NULL);
xres = data_field->xres;
yres = data_field->yres;
kxres = kernel_field->xres;
kyres = kernel_field->yres;
if (kxres <= 0 || kyres <= 0) {
g_warning("Correlation kernel has nonpositive size.");
return;
}
switch (method) {
case GWY_CORRELATION_NORMAL:
gwy_data_field_fill(score, -1);
/*correlation request outside kernel */
if (kxres > xres || kyres > yres) {
return;
}
{
GwyDataField *avg, *rms;
gdouble s, davg, drms, kavg, krms;
gint xoff, yoff;
/* The number of pixels the correlation kernel extends to the
* negative direction */
xoff = (kxres - 1)/2;
yoff = (kyres - 1)/2;
kavg = gwy_data_field_get_avg(kernel_field);
krms = gwy_data_field_get_rms(kernel_field);
avg = gwy_data_field_duplicate(data_field);
rms = gwy_data_field_duplicate(data_field);
calculate_normalization(avg, rms, kxres, kyres);
for (i = yoff; i + kyres - yoff <= yres; i++) {
for (j = xoff; j + kxres - xoff <= xres; j++) {
k = i*xres + j;
davg = avg->data[k];
drms = rms->data[k];
if (!krms || !drms) {
score->data[k] = 0.0;
continue;
}
s = gwy_data_field_get_raw_correlation_score(data_field,
kernel_field,
j - xoff,
i - yoff,
0, 0,
kxres, kyres,
davg, kavg);
score->data[k] = s/(drms*krms);
}
}
g_object_unref(avg);
g_object_unref(rms);
}
break;
case GWY_CORRELATION_FFT:
case GWY_CORRELATION_POC:
fftxres = gwy_fft_find_nice_size(xres);
fftyres = gwy_fft_find_nice_size(yres);
data_in_re = gwy_data_field_new_resampled(data_field,
fftxres, fftyres,
GWY_INTERPOLATION_BILINEAR);
kernel_in_re = gwy_data_field_new_alike(data_field, TRUE);
gwy_data_field_area_copy(kernel_field, kernel_in_re,
0, 0, kernel_field->xres, kernel_field->yres,
kernel_in_re->xres/2 - kernel_field->xres/2,
kernel_in_re->yres/2 - kernel_field->yres/2);
gwy_data_field_resample(kernel_in_re, fftxres, fftyres,
GWY_INTERPOLATION_BILINEAR);
gwy_data_field_resample(score, fftxres, fftyres,
GWY_INTERPOLATION_NONE);
data_out_re = gwy_data_field_new_alike(data_in_re, TRUE);
data_out_im = gwy_data_field_new_alike(data_in_re, TRUE);
kernel_out_re = gwy_data_field_new_alike(data_in_re, TRUE);
kernel_out_im = gwy_data_field_new_alike(data_in_re, TRUE);
gwy_data_field_2dfft(data_in_re, NULL, data_out_re, data_out_im,
GWY_WINDOWING_NONE,
GWY_TRANSFORM_DIRECTION_FORWARD,
GWY_INTERPOLATION_BILINEAR, FALSE, FALSE);
gwy_data_field_2dfft(kernel_in_re, NULL, kernel_out_re, kernel_out_im,
GWY_WINDOWING_NONE,
GWY_TRANSFORM_DIRECTION_FORWARD,
GWY_INTERPOLATION_BILINEAR, FALSE, FALSE);
for (i = 0; i < fftxres*fftyres; i++) {
/*NOTE: now we construct new "complex field" from data
* and kernel fields, just to save memory*/
data_in_re->data[i] = data_out_re->data[i]*kernel_out_re->data[i]
+ data_out_im->data[i]*kernel_out_im->data[i];
kernel_in_re->data[i] = -data_out_re->data[i]*kernel_out_im->data[i]
+ data_out_im->data[i]*kernel_out_re->data[i];
if (method == GWY_CORRELATION_POC) {
norm = hypot(data_in_re->data[i], kernel_in_re->data[i]);
data_in_re->data[i] /= norm;
kernel_in_re->data[i] /= norm;
}
}
gwy_data_field_2dfft(data_in_re, kernel_in_re, score, data_out_im,
GWY_WINDOWING_NONE,
GWY_TRANSFORM_DIRECTION_BACKWARD,
GWY_INTERPOLATION_BILINEAR, FALSE, FALSE);
gwy_data_field_2dfft_humanize(score);
/*TODO compute it and put to score field*/
g_object_unref(data_in_re);
g_object_unref(data_out_re);
g_object_unref(data_out_im);
g_object_unref(kernel_in_re);
g_object_unref(kernel_out_re);
g_object_unref(kernel_out_im);
break;
}
gwy_data_field_invalidate(score);
}
static gboolean
xydenoise_do(XYdenoiseArgs *args)
{
GwyContainer *data;
GwyDataField *dfieldx, *rx, *ix, *dfieldy, *ry, *iy, *result, *iresult;
gint i, newid, xres, yres;
gdouble *rxdata, *rydata, *ixdata, *iydata;
GwyWindowingType window = GWY_WINDOWING_NONE;
GwyInterpolationType interp = GWY_INTERPOLATION_LINEAR;
GQuark quark;
data = gwy_app_data_browser_get(args->op1.datano);
gwy_app_wait_start(gwy_app_find_window_for_channel(data, args->op1.id),
_("Initializing..."));
quark = gwy_app_get_data_key_for_id(args->op1.id);
dfieldx = GWY_DATA_FIELD(gwy_container_get_object(data, quark));
data = gwy_app_data_browser_get(args->op2.datano);
quark = gwy_app_get_data_key_for_id(args->op2.id);
dfieldy = GWY_DATA_FIELD(gwy_container_get_object(data, quark));
xres = gwy_data_field_get_xres(dfieldx);
yres = gwy_data_field_get_yres(dfieldy);
result = gwy_data_field_new_alike(dfieldx, TRUE);
iresult = gwy_data_field_new_alike(dfieldx, TRUE);
rx = gwy_data_field_new_alike(dfieldx, TRUE);
ix = gwy_data_field_new_alike(dfieldx, TRUE);
ry = gwy_data_field_new_alike(dfieldx, TRUE);
iy = gwy_data_field_new_alike(dfieldx, TRUE);
gwy_app_wait_set_fraction(0.1);
gwy_app_wait_set_message(_("Computing forward FFTs..."));
gwy_data_field_2dfft(dfieldx, NULL, rx, ix,
window, GWY_TRANSFORM_DIRECTION_FORWARD, interp,
FALSE, 0);
gwy_data_field_2dfft(dfieldy, NULL, ry, iy,
window, GWY_TRANSFORM_DIRECTION_FORWARD, interp,
FALSE, 0);
rxdata = gwy_data_field_get_data(rx);
rydata = gwy_data_field_get_data(ry);
ixdata = gwy_data_field_get_data(ix);
iydata = gwy_data_field_get_data(iy);
gwy_app_wait_set_fraction(0.3);
gwy_app_wait_set_message(_("Computing image..."));
for (i = 0; i < xres*yres; i++) {
gdouble xmodule = sqrt(rxdata[i]*rxdata[i] + ixdata[i]*ixdata[i]);
gdouble xphase = atan2(ixdata[i],rxdata[i]);
gdouble ymodule = sqrt(rydata[i]*rydata[i] + iydata[i]*iydata[i]);
/*gdouble yphase = atan2(iydata[i],rydata[i]);*/
rxdata[i] = MIN(xmodule, ymodule)*cos(xphase);
ixdata[i] = MIN(xmodule, ymodule)*sin(xphase);
}
gwy_app_wait_set_fraction(0.7);
gwy_app_wait_set_message(_("Computing backward FFT..."));
gwy_data_field_2dfft(rx, ix, result, iresult,
window, GWY_TRANSFORM_DIRECTION_BACKWARD, interp,
FALSE, 0);
gwy_app_wait_set_fraction(0.9);
data = gwy_app_data_browser_get(args->op1.datano);
newid = gwy_app_data_browser_add_data_field(result, data, TRUE);
gwy_app_sync_data_items(data, data, args->op1.id, newid, FALSE,
GWY_DATA_ITEM_GRADIENT, 0);
gwy_app_set_data_field_title(data, newid, _("Denoised"));
gwy_app_channel_log_add_proc(data, -1, newid);
gwy_app_wait_finish();
g_object_unref(result);
g_object_unref(iresult);
g_object_unref(rx);
g_object_unref(ix);
g_object_unref(ry);
g_object_unref(iy);
return TRUE;
}
static void
merge_do_correlate(MergeArgs *args)
{
GwyDataField *dfield1, *dfield2;
GwyDataField *correlation_data, *correlation_kernel, *correlation_score;
GwyRectangle cdata, kdata;
gint max_col, max_row;
gint xres1, xres2, yres1, yres2;
GwyMergeDirectionType real_dir = args->direction;
GwyMergeBoundaryType real_boundary = args->boundary;
gint px1, py1, px2, py2;
GwyContainer *data1, *data2;
GQuark quark;
data1 = gwy_app_data_browser_get(args->op1.datano);
quark = gwy_app_get_data_key_for_id(args->op1.id);
dfield1 = GWY_DATA_FIELD(gwy_container_get_object(data1, quark));
data2 = gwy_app_data_browser_get(args->op2.datano);
quark = gwy_app_get_data_key_for_id(args->op2.id);
dfield2 = GWY_DATA_FIELD(gwy_container_get_object(data2, quark));
if ((dfield1->xres*dfield1->yres) < (dfield2->xres*dfield2->yres)) {
GWY_SWAP(GwyDataField*, dfield1, dfield2);
if (args->direction == GWY_MERGE_DIRECTION_UP)
real_dir = GWY_MERGE_DIRECTION_DOWN;
else if (args->direction == GWY_MERGE_DIRECTION_DOWN)
real_dir = GWY_MERGE_DIRECTION_UP;
else if (args->direction == GWY_MERGE_DIRECTION_LEFT)
real_dir = GWY_MERGE_DIRECTION_RIGHT;
else if (args->direction == GWY_MERGE_DIRECTION_RIGHT)
real_dir = GWY_MERGE_DIRECTION_LEFT;
else
g_return_if_reached();
if (args->boundary == GWY_MERGE_BOUNDARY_FIRST)
real_boundary = GWY_MERGE_BOUNDARY_SECOND;
else if (args->boundary == GWY_MERGE_BOUNDARY_SECOND)
real_boundary = GWY_MERGE_BOUNDARY_FIRST;
}
xres1 = gwy_data_field_get_xres(dfield1);
xres2 = gwy_data_field_get_xres(dfield2);
yres1 = gwy_data_field_get_yres(dfield1);
yres2 = gwy_data_field_get_yres(dfield2);
/*cut data for correlation*/
switch (real_dir) {
case GWY_MERGE_DIRECTION_UP:
cdata.x = 0;
cdata.y = 0;
cdata.width = xres1;
cdata.height = yres1/2;
kdata.width = MIN(xres2, cdata.width/2);
kdata.height = MIN(yres2, cdata.height/3);
kdata.x = MAX(0, xres2/2 - kdata.width/2);
kdata.y = MAX(0, yres2 - cdata.height/3);
break;
case GWY_MERGE_DIRECTION_DOWN:
cdata.x = 0;
cdata.y = yres1 - (yres1/2);
cdata.width = xres1;
cdata.height = yres1/2;
kdata.width = MIN(xres2, cdata.width/2);
kdata.height = MIN(yres2, cdata.height/3);
kdata.x = MAX(0, xres2/2 - kdata.width/2);
kdata.y = 0;
break;
case GWY_MERGE_DIRECTION_RIGHT:
cdata.x = xres1 - (xres1/2);
cdata.y = 0;
cdata.width = xres1/2;
cdata.height = yres1;
kdata.width = MIN(xres2, cdata.width/3);
kdata.height = MIN(yres2, cdata.height/2);
kdata.x = 0;
kdata.y = MAX(0, yres2/2 - kdata.height/2);
break;
case GWY_MERGE_DIRECTION_LEFT:
cdata.x = 0;
cdata.y = 0;
cdata.width = xres1/2;
cdata.height = yres1;
kdata.width = MIN(xres2, cdata.width/3);
kdata.height = MIN(yres2, cdata.height/2);
kdata.x = MAX(0, xres2 - cdata.width/3);
kdata.y = MAX(0, yres2/2 - kdata.height/2);
break;
default:
g_assert_not_reached();
break;
}
correlation_data = gwy_data_field_area_extract(dfield1,
cdata.x,
cdata.y,
cdata.width,
cdata.height);
correlation_kernel = gwy_data_field_area_extract(dfield2,
kdata.x,
kdata.y,
kdata.width,
kdata.height);
correlation_score = gwy_data_field_new_alike(correlation_data, FALSE);
/* get appropriate correlation score */
if (!get_score_iteratively(correlation_data, correlation_kernel,
correlation_score, args))
goto end;
find_score_maximum(correlation_score, &max_col, &max_row);
gwy_debug("c: %d %d %dx%d k: %d %d %dx%d res: %d %d",
cdata.x,
cdata.y,
cdata.width,
cdata.height,
kdata.x,
kdata.y,
kdata.width,
kdata.height,
max_col, max_row);
px1 = 0;
px2 = (max_col - (kdata.width-1)/2) + cdata.x - kdata.x;
py1 = 0;
py2 = (max_row - (kdata.height-1)/2) + cdata.y - kdata.y;
if (px2 < 0) {
px1 = -px2;
px2 = 0;
}
if (py2 < 0) {
py1 = -py2;
py2 = 0;
}
create_merged_field(data1, args->op1.id,
dfield1, dfield2,
px1, py1, px2, py2,
real_boundary, real_dir,
args->create_mask, args->crop_to_rectangle);
end:
g_object_unref(correlation_data);
g_object_unref(correlation_kernel);
g_object_unref(correlation_score);
}
static void
gwy_data_field_facet_distribution(GwyDataField *dfield,
gint kernel_size,
GwyContainer *container)
{
GwyDataField *dtheta, *dphi, *dist;
GwySIUnit *siunit;
gdouble *xd, *yd, *data;
const gdouble *xdc, *ydc;
gdouble q, max;
gint res, hres, i, j, mi, mj, xres, yres;
if (gwy_container_gis_object_by_name(container, "/theta", &dtheta))
g_object_ref(dtheta);
else
dtheta = gwy_data_field_new_alike(dfield, FALSE);
if (gwy_container_gis_object_by_name(container, "/phi", &dphi))
g_object_ref(dphi);
else
dphi = gwy_data_field_new_alike(dfield, FALSE);
compute_slopes(dfield, kernel_size, dtheta, dphi);
xres = gwy_data_field_get_xres(dfield);
yres = gwy_data_field_get_yres(dfield);
xd = gwy_data_field_get_data(dtheta);
yd = gwy_data_field_get_data(dphi);
for (i = xres*yres; i; i--, xd++, yd++) {
gdouble theta, phi;
slopes_to_angles(*xd, *yd, &theta, &phi);
*xd = theta;
*yd = phi;
}
q = gwy_data_field_get_max(dtheta);
q = MIN(q*1.05, G_PI/2.0);
q = G_SQRT2/(2.0*sin(q/2.0));
if (gwy_container_gis_object_by_name(container, "/0/data", &dist)) {
g_object_ref(dist);
gwy_data_field_clear(dist);
gwy_data_field_set_xreal(dist, 2.0*G_SQRT2/q);
gwy_data_field_set_yreal(dist, 2.0*G_SQRT2/q);
}
else {
dist = gwy_data_field_new(FDATA_RES, FDATA_RES,
2.0*G_SQRT2/q, 2.0*G_SQRT2/q,
TRUE);
siunit = gwy_si_unit_new("");
gwy_data_field_set_si_unit_z(dist, siunit);
g_object_unref(siunit);
/* FIXME */
siunit = gwy_si_unit_new("");
gwy_data_field_set_si_unit_xy(dist, siunit);
g_object_unref(siunit);
}
res = FDATA_RES;
hres = (res - 1)/2;
data = gwy_data_field_get_data(dist);
xdc = gwy_data_field_get_data_const(dtheta);
ydc = gwy_data_field_get_data_const(dphi);
for (i = xres*yres; i; i--, xdc++, ydc++) {
gdouble x, y;
gint xx, yy;
angles_to_xy(*xdc, *ydc, &x, &y);
xx = GWY_ROUND(q*x/G_SQRT2*hres) + hres;
yy = GWY_ROUND(q*y/G_SQRT2*hres) + hres;
data[yy*res + xx] += 1.0;
}
/* Find maxima */
mi = mj = hres;
max = 0;
for (i = 1; i+1 < res; i++) {
for (j = 1; j+1 < res; j++) {
gdouble z;
z = data[i*res + j]
+ 0.3*(data[i*res + j - 1]
+ data[i*res + j + 1]
+ data[i*res - res + j]
+ data[i*res + res + j])
+ 0.1*(data[i*res - res + j - 1]
+ data[i*res - res + j + 1]
+ data[i*res + res + j - 1]
+ data[i*res + res + j + 1]);
if (G_UNLIKELY(z > max)) {
max = z;
mi = i;
mj = j;
}
}
}
for (i = res*res; i; i--, data++)
*data = pow(*data, 0.35);
gwy_container_set_double_by_name(container, "/q", q);
{
gdouble x, y, theta, phi;
x = (mj - hres)*G_SQRT2/(q*hres);
y = (mi - hres)*G_SQRT2/(q*hres);
xy_to_angles(x, y, &theta, &phi);
gwy_container_set_double_by_name(container, "/theta0", theta);
gwy_container_set_double_by_name(container, "/phi0", phi);
}
gwy_container_set_object_by_name(container, "/0/data", dist);
g_object_unref(dist);
gwy_container_set_object_by_name(container, "/theta", dtheta);
g_object_unref(dtheta);
gwy_container_set_object_by_name(container, "/phi", dphi);
g_object_unref(dphi);
gwy_container_set_string_by_name(container, "/0/base/palette",
g_strdup(FVIEW_GRADIENT));
gwy_data_field_data_changed(dist);
}
static void
maskcor_do(MaskcorArgs *args)
{
enum { WORK_PER_UPDATE = 50000000 };
GwyDataField *dfield, *kernel, *retfield, *score;
GwyContainer *data, *kerneldata;
GwyComputationState *state;
GQuark quark;
gint newid, work, wpi;
kerneldata = gwy_app_data_browser_get(args->kernel.datano);
quark = gwy_app_get_data_key_for_id(args->kernel.id);
kernel = GWY_DATA_FIELD(gwy_container_get_object(kerneldata, quark));
data = gwy_app_data_browser_get(args->data.datano);
quark = gwy_app_get_data_key_for_id(args->data.id);
dfield = GWY_DATA_FIELD(gwy_container_get_object(data, quark));
retfield = gwy_data_field_new_alike(dfield, FALSE);
/* FIXME */
if (args->method == GWY_CORRELATION_NORMAL) {
gwy_app_wait_start(gwy_app_find_window_for_channel(data, args->data.id),
_("Initializing..."));
state = gwy_data_field_correlate_init(dfield, kernel, retfield);
gwy_app_wait_set_message(_("Correlating..."));
work = 0;
wpi = gwy_data_field_get_xres(kernel)*gwy_data_field_get_yres(kernel);
wpi = MIN(wpi, WORK_PER_UPDATE);
do {
gwy_data_field_correlate_iteration(state);
work += wpi;
if (work > WORK_PER_UPDATE) {
work -= WORK_PER_UPDATE;
if (!gwy_app_wait_set_fraction(state->fraction)) {
gwy_data_field_correlate_finalize(state);
gwy_app_wait_finish();
g_object_unref(retfield);
return;
}
}
} while (state->state != GWY_COMPUTATION_STATE_FINISHED);
gwy_data_field_correlate_finalize(state);
gwy_app_wait_finish();
}
else
gwy_data_field_correlate(dfield, kernel, retfield, args->method);
/* score - do new data with score */
if (args->result == GWY_MASKCOR_SCORE) {
score = gwy_data_field_duplicate(retfield);
newid = gwy_app_data_browser_add_data_field(score, data, TRUE);
gwy_app_sync_data_items(data, data,
args->data.id, newid, FALSE,
GWY_DATA_ITEM_GRADIENT, 0);
gwy_app_set_data_field_title(data, newid,
_("Correlation score"));
g_object_unref(score);
gwy_app_channel_log_add_proc(data, args->data.id, newid);
}
else {
/* add mask */
quark = gwy_app_get_mask_key_for_id(args->data.id);
gwy_app_undo_qcheckpointv(data, 1, &quark);
if (args->result == GWY_MASKCOR_OBJECTS)
plot_correlated(retfield,
gwy_data_field_get_xres(kernel),
gwy_data_field_get_yres(kernel),
args->threshold);
else if (args->result == GWY_MASKCOR_MAXIMA)
gwy_data_field_threshold(retfield, args->threshold, 0.0, 1.0);
gwy_container_set_object(data, quark, retfield);
gwy_app_channel_log_add_proc(data, args->data.id, args->data.id);
}
g_object_unref(retfield);
}
