int main(int argc, char *argv[])
{
if(argc == 1 && !cgiIsOnWeb())
usage();
cgiSpoof(&argc, argv);
checkArguments();
hSetDb(origGenome);
if(hgTest)
runSamples("hgCoordConv.test.good", "hgCoordConv.test.bad", origGenome, origGenome, numTests);
else
{
/* do our thing */
if(calledSelf)
{
cartEmptyShell(doConvertCoordinates, hUserCookie(), excludeVars, NULL);
}
else
{
/* Check to see if in zoo browser... if so call doFormZoo */
if (!containsStringNoCase(origDb, "zoo"))
cartEmptyShell(doForm, hUserCookie(), excludeVars, NULL);
else
cartEmptyShell(doFormZoo, hUserCookie(), excludeVars, NULL);
}
}
return 0;
}
int main(int argc, char *argv[])
{
long enteredMainTime = clock1000();
measureTime(NULL);
setUdcCacheDir();
browserName = hBrowserName();
organization = "UCSC";
/* Push very early error handling - this is just
* for the benefit of the cgiVarExists, which
* somehow can't be moved effectively into doMiddle. */
htmlPushEarlyHandlers();
cgiSpoof(&argc, argv);
char * link = webTimeStampedLinkToResourceOnFirstCall("HGStyle.css",TRUE); // resource file link
if (link) // wrapped in html
htmlSetStyle(link);
oldVars = hashNew(10);
if (cgiVarExists("hgt.redirectTool"))
{
printf("Content-type: text/html\n\n");
cart = cartForSession(hUserCookie(), NULL, NULL);
printf("<html><body>\n");
printf("<form id=\"redirForm\" method=\"POST\" action=\"http://tefor.net/crisporMax/crispor.cgi\">\n");
printf("<input type=\"hidden\" name=\"pos\" value=\"%s\">", cartString(cart, "position"));
printf("<input type=\"hidden\" name=\"org\" value=\"%s\">", cartString(cart, "db"));
printf("<input type=\"hidden\" name=\"pam\" value=\"NGG\">\n");
// a hidden submit button, see
// http://stackoverflow.com/questions/477691/submitting-a-form-by-pressing-enter-without-a-submit-button
printf("<input type=\"submit\" style=\"position: absolute; left: -9999px; width: 1px; height: 1px;\">\n");
printf("</form>\n");
// a little javascript that clicks the submit button
printf("<script>document.getElementById(\"redirForm\").submit();</script>\n");
printf("</body></html>\n");
}
else
cartHtmlShell("UCSC Genome Browser v"CGI_VERSION, doMiddle, hUserCookie(), excludeVars, oldVars);
if (measureTiming)
measureTime("Time to write and close cart");
if (measureTiming)
{
fprintf(stdout, "<span class='timing'>Overall total time: %ld millis<br /></span>\n",
clock1000() - enteredMainTime);
}
cgiExitTime("hgTracks", enteredMainTime);
return 0;
}
int main(int argc, char *argv[])
{
oldVars = hashNew(8);
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process command line */
{
oldCart = hashNew(8);
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), NULL, oldCart);
return 0;
}
int main(int argc, char *argv[])
{
cgiSpoof(&argc, argv);
if (cgiVarExists("pbt.reset"))
resetVars();
/* call cartHtmlShellPbGlobal to accomodate situations that PB not entered from GB */
cartHtmlShellPbGlobal("UCSC Proteome Browser V1.1", doMiddle, hUserCookie(), excludeVars, NULL);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, NULL);
cgiExitTime("hgFileSearch", enteredMainTime);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
oldVars = hashNew(10);
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
cgiExitTime("hgPcr", enteredMainTime);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
boolean isFromWeb = cgiIsOnWeb();
if (!isFromWeb && !cgiSpoof(&argc, argv))
usage();
oldVars = hashNew(0);
cartEmptyShellNoContent(localWebWrap, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
cgiSpoof(&argc, argv);
if (argc != 1)
usage();
oldCart = hashNew(12);
cartEmptyShell(cartMain, hUserCookie(), excludeVars, oldCart);
return 0;
}
static char *getCookieUser()
/* get user from hguid cookie */
{
char *user = NULL;
char *centralCookie = hUserCookie();
if (centralCookie)
user = findCookieData(centralCookie);
return user;
}
void hggDoUsualHttp()
/* Wrap html page dispatcher with code that writes out
* HTTP header and write cart back to database. */
{
cartWriteCookie(cart, hUserCookie());
printf("Content-Type:text/html\r\n\r\n");
/* Dispatch other pages, that actually want to write HTML. */
cartWarnCatcher(dispatchPage, cart, cartEarlyWarningHandler);
cartCheckout(&cart);
}
int main(int argc, char *argv[])
/* Process command line. */
{
cgiSpoof(&argc, argv);
if (cgiVarExists("db"))
{
database=cgiOptionalString("db");
}
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
struct cart *theCart;
struct hash *oldVars = hashNew(8);
cgiSpoof(&argc, argv);
// Sometimes we output HTML and sometimes plain text; let each outputter
// take care of headers instead of using a fixed cart*Shell().
theCart = cartAndCookieWithHtml(hUserCookie(), excludeVars, oldVars, FALSE);
doMiddle(theCart);
cartCheckout(&theCart);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
uglyTime(NULL);
cgiSpoof(&argc, argv);
setUdcCacheDir();
oldCart = hashNew(0);
if (cgiVarExists(hgpDoDownload)) /* use cgiVars -- do not commit to any cart method yet */
{
struct sqlConnection *conn = sqlConnect(visiDb);
cart = cartAndCookieNoContent(hUserCookie(), excludeVars, oldCart);
doDownload(conn);
cartCheckout(&cart);
}
else
{
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldCart);
}
cgiExitTime("hgVisiGene", enteredMainTime);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
htmlPushEarlyHandlers();
cgiSpoof(&argc, argv);
// htmlSetStyle(htmlStyleUndecoratedLink);
if (argc != 1)
usage();
oldVars = hashNew(12);
cart = cartForSession(hUserCookie(), excludeVars, oldVars);
dispatchLocation();
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
cgiSpoof(&argc, argv);
htmlSetStyle(htmlStyleUndecoratedLink);
if (argc != 1)
usage();
oldVars = hashNew(10);
cartEmptyShell(cartMain, hUserCookie(), excludeVars, oldVars);
cgiExitTime("hgGene", enteredMainTime);
return 0;
}
void resetVars()
/* Reset vars except for position and database. */
{
static char *except[] = {"db", "position", NULL};
char *cookieName = hUserCookie();
int sessionId = cgiUsualInt(cartSessionVarName(), 0);
char *hguidString = findCookieData(cookieName);
int userId = (hguidString == NULL ? 0 : atoi(hguidString));
struct cart *oldCart = cartNew(userId, sessionId, NULL, NULL);
cartRemoveExcept(oldCart, except);
cartCheckout(&oldCart);
cgiVarExcludeExcept(except);
}
int main(int argc, char *argv[])
{
long enteredMainTime = clock1000();
measureTime(NULL);
browserName = hBrowserName();
organization = "UCSC";
/* Push very early error handling - this is just
* for the benefit of the cgiVarExists, which
* somehow can't be moved effectively into doMiddle. */
htmlPushEarlyHandlers();
cgiSpoof(&argc, argv);
char * link = webTimeStampedLinkToResourceOnFirstCall("HGStyle.css",TRUE); // resource file link
if (link) // wrapped in html
htmlSetStyle(link);
oldVars = hashNew(10);
if (cgiVarExists("hgt.redirectTool"))
{
printf("Content-type: text/html\n\n");
errAbortSetDoContentType(FALSE);
cart = cartForSession(hUserCookie(), NULL, NULL);
extToolRedirect(cart, cgiString("hgt.redirectTool"));
}
else
cartHtmlShell("UCSC Genome Browser v"CGI_VERSION, doMiddle, hUserCookie(), excludeVars, oldVars);
if (measureTiming)
measureTime("Time to write and close cart");
if (measureTiming)
{
fprintf(stdout, "<span class='timing'>Overall total time: %ld millis<br /></span>\n",
clock1000() - enteredMainTime);
}
cgiExitTime("hgTracks", enteredMainTime);
return 0;
}
void doMiddle()
/* cartReset - Reset cart. */
{
cartResetInDb(hUserCookie());
/*
//Keep in case we need it later. The standards say we should provide
//a clickable link for browsers that do not support meta refresh
printf("Your settings are now reset to defaults.<BR>");
char *destination = cgiUsualString("destination", defaultDestination);
printf("You will be automatically redirected to the gateway page in 0 second,\n"
" or you can <BR> <A href=\"%s\">click here to continue</A>.\n",
destination);
*/
}
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
oldVars = hashNew(10);
cgiSpoof(&argc, argv);
setUdcCacheDir();
/* org has precedence over db when changeInfo='orgChange' */
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
cgiExitTime("hgBlat", enteredMainTime);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
oldVars = hashNew(10);
cgiSpoof(&argc, argv);
/* org has precedence over db when changeInfo='orgChange' */
orgChange = sameOk(cgiOptionalString("changeInfo"),"orgChange");
if (orgChange)
{
cgiVarSet("db", hDefaultDbForGenome(cgiOptionalString("org")));
}
htmlSetBackground(hBackgroundImage());
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process CGI / command line. */
{
/* Null terminated list of CGI Variables we don't want to save
* permanently. */
char *excludeVars[] = {SEARCH_TERM, CARTJSON_COMMAND, NULL,};
cgiSpoof(&argc, argv);
setUdcCacheDir();
if (cgiOptionalString(SEARCH_TERM))
// Skip the cart for speedy searches
lookupTerm();
else
{
oldVars = hashNew(10);
cartEmptyShellNoContent(doMiddle, hUserCookie(), excludeVars, oldVars);
}
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
pushCarefulMemHandler(100000000);
cgiSpoof(&argc, argv);
htmlSetStyle(htmlStyleUndecoratedLink);
htmlSetBgColor(HG_CL_OUTSIDE);
oldCart = hashNew(10);
cart = cartAndCookie(hUserCookie(), excludeVars, oldCart);
getDbAndGenome(cart, &database, &genome, oldCart);
//hSetDb(database);
conn = hAllocConn(database);
database = strdup("h1n1");
/* Get sortOn. Revert to default by subject Id. */
orderOn = cartUsualString(cart, orderVarName, "+subjId");
displayCountString = cartUsualString(cart, countVarName, "50");
if (sameString(displayCountString, "all"))
displayCount = BIGNUM;
else
displayCount = atoi(displayCountString);
colList = getColumns(conn);
if (cgiVarExists("submit_filter"))
{
struct dyString *head = dyStringNew(1024);
boolean redir = cgiVarExists(redirectName);
struct subjInfo *subjList = NULL;
struct column *ordList = colList;
struct column *ord = curOrder(ordList);
subjList = getOrderedList(ord, colList, conn, BIGNUM);
saveSubjList(subjList);
if ((!subjList || redir))
{
if (subjList && redir)
{
dyStringPrintf(head,
"<META HTTP-EQUIV=\"REFRESH\" CONTENT=\"0;URL=/cgi-bin/%s\">"
"<META HTTP-EQUIV=\"Pragma\" CONTENT=\"no-cache\">"
"<META HTTP-EQUIV=\"Expires\" CONTENT=\"-1\">"
, cgiString(redirectName));
cartRemove(cart, redirectName);
}
htmStartWithHead(stdout, head->string, "GISAID Table View");
if (!subjList) /* if everything has been filtered out, we'll have to go back */
{
hPrintf("No subject(s) found with the filtering conditions specified.<br>");
hPrintf("Click <a href=\"gisaidTable?gisaidTable.do.advFilter=filter+%%28now+on%%29\">here</a> "
"to return to Select Subjects.<br>");
}
cartCheckout(&cart);
htmlEnd();
hFreeConn(&conn);
return 0;
}
}
htmStart(stdout, "GISAID Table View");
cartWarnCatcher(doMiddle, cart, htmlVaWarn);
cartCheckout(&cart);
htmlEnd();
hFreeConn(&conn);
return 0;
}
