bool IRKE::exceeds_min_connectivity (KmerCounter& kcounter, string kmerA, string kmerB, float min_connectivity) {
kmer_int_type_t valA = kmer_to_intval(kmerA);
kmer_int_type_t valB = kmer_to_intval(kmerB);
Kmer_Occurence_Pair pairA(valA, kcounter.get_kmer_count(valA));
Kmer_Occurence_Pair pairB(valB, kcounter.get_kmer_count(valB));
return exceeds_min_connectivity(kcounter, pairA, pairB, min_connectivity);
}
vector<kmer_int_type_t> sequence_string_to_kmer_int_type_vector(const string& sequence, int kmer_length) {
vector<kmer_int_type_t> kit_vec;
for (unsigned int i = 0; i <= sequence.length() - kmer_length; i++) {
string kmer = sequence.substr(i, kmer_length);
kmer_int_type_t k = kmer_to_intval(kmer);
kit_vec.push_back(k);
}
return(kit_vec);
}
