void hgLoadOutJoined(char *database, int rmskCount, char *rmskFileNames[], char *suffix)
/* hgLoadOutJoined - load RepeatMasker .out files into database. */
{
struct sqlConnection *conn = NULL;
int i;
if (tabFileName == NULL)
{
conn = hAllocConn(database);
verbose(2,"#\thgLoadOutJoined: connected to database: %s\n", database);
}
for (i=0; i<rmskCount; ++i)
{
readOneOut(rmskFileNames[i]);
}
closeFiles();
if (tabFileName == NULL)
{
loadOneTable(database, conn, defaultTempName, suffix);
}
hFreeConn(&conn);
if (badRepCnt > 0)
{
warn("note: %d records dropped due to repEnd < 0 or repStart > repEnd\n", badRepCnt);
if (verboseLevel() < 2)
warn(" run with -verbose=2 for details\n");
}
}
void CQUpdatesWidget::loadWidget()
{
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CModel* pModel = (*CCopasiRootContainer::getDatamodelList())[0]->getModel();
if (!pModel) return;
pModel->compileIfNecessary(NULL);
mRefreshsMap.clear();
fillRefreshsMapRecursively(pModel);
loadOneTable(mpTable0, pModel->getListOfInitialRefreshes());
loadOneTable(mpTable1, pModel->getListOfConstantRefreshes());
loadOneTable(mpTable2, pModel->getListOfSimulatedRefreshes());
loadOneTable(mpTable3, pModel->getListOfNonSimulatedRefreshes());
loadObjectsTable(pModel);
}
void loadOneSplitTable(struct hashEl *hel)
/* Load the table for the given chrom. */
{
char tempName[512];
char tableName[256];
char *chrom = hel->name;
safef(tempName, sizeof(tempName), "%s_%s", chrom, defaultTempName);
safef(tableName, sizeof(tableName), "%s_%s", chrom, suffix);
loadOneTable(sqlGetDatabase(theConn), theConn, tempName, tableName);
}
void processOneOut(char *database, struct sqlConnection *conn, char *rmskFile, char *suffix)
/* Read one RepeatMasker .out file and load it into database. */
{
verbose(1, "Processing %s\n", rmskFile);
readOneOut(rmskFile);
/* Create database table (if not -tabFile). */
if (tabFileName == NULL)
{
char dir[256], base[128], extension[64];
char tableName[256];
splitPath(rmskFile, dir, base, extension);
chopSuffix(base);
safef(tableName, sizeof(tableName), "%s_%s", base, suffix);
closeFiles();
loadOneTable(database, conn, defaultTempName, tableName);
}
}
