void dem::repositories::RepositorySTDStack::terminate() {
logTraceIn( "terminate()" );
_repositoryState.setAction( dem::records::RepositoryState::Terminate );
#ifdef Parallel
if (tarch::parallel::Node::getInstance().isGlobalMaster()) {
tarch::parallel::NodePool::getInstance().broadcastToWorkingNodes(
_repositoryState,
peano::parallel::SendReceiveBufferPool::getInstance().getIterationManagementTag()
);
}
peano::parallel::SendReceiveBufferPool::getInstance().terminate();
#endif
_gridWithCreateGrid.terminate();
_gridWithCreateGridAndPlot.terminate();
_gridWithTimeStep.terminate();
_gridWithTimeStepAndPlot.terminate();
_gridWithTimeStepOnDynamicGrid.terminate();
_gridWithTimeStepAndPlotOnDynamicGrid.terminate();
_gridWithTimeStepOnReluctantDynamicGrid.terminate();
_gridWithTimeStepAndPlotOnReluctantDynamicGrid.terminate();
logTraceOut( "terminate()" );
}
void peano::applications::poisson::multigrid::repositories::MultigridBatchJobRepositoryForSpacetreeGridFileStackImplementation::restart(
const tarch::la::Vector<DIMENSIONS,bool>& evenFlags,
const tarch::la::Vector<THREE_POWER_D,int>& traversalOrderOfNeighbours,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& domainOffset,
int domainLevel
) {
logTraceInWith2Arguments( "restart(...)", evenFlags, traversalOrderOfNeighbours );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == MultigridBatchJobRepositoryState::Terminate );
_vertexStack.clear();
_cellStack.clear();
_gridWithSetupExperiment.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetupExperimentAndPlotGrid.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetupExperimentAndPlotStartSolution.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSmoothAndComputeGalerkinCoarseGridOperator.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithPlotSolution.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
logTraceOut( "restart(...)" );
}
void peano::applications::heatequation::timestepping::adapters::SpacetreeGrid2PlotGrid::endIteration(
peano::applications::heatequation::timestepping::SpacetreeGridState& solverState
) {
logTraceInWith1Argument( "endIteration(...)", solverState );
#ifdef SharedTBB
Vertex2IndexMapSemaphore::scoped_lock localLock(_vertex2IndexMapSemaphore);
#elif SharedOMP
#pragma omp critical
#endif
_vertexWriter->close();
_cellWriter->close();
_vertexTypeWriter->close();
_vertexRefinementControlWriter->close();
_vertexMaximumSubtreeWriter->close();
#ifdef Parallel
_cellDeltaWriter->close();
_cellWeightWriter->close();
#endif
delete _vertexWriter;
delete _cellWriter;
delete _vertexTypeWriter;
delete _vertexRefinementControlWriter;
delete _vertexMaximumSubtreeWriter;
#ifdef Parallel
delete _cellDeltaWriter;
delete _cellWeightWriter;
#endif
_vertexWriter = 0;
_cellWriter = 0;
_vertexTypeWriter = 0;
_vertexRefinementControlWriter = 0;
_vertexMaximumSubtreeWriter = 0;
#ifdef Parallel
_cellDeltaWriter = 0;
_cellWeightWriter = 0;
#endif
std::ostringstream snapshotFileName;
snapshotFileName << "vtk-grid-snapshot-SpacetreeGrid2PlotGrid-"
<< _snapshotCounter
#ifdef Parallel
<< "-rank" << tarch::parallel::Node::getInstance().getRank()
#endif
<< ".vtk";
_vtkWriter.writeToFile( snapshotFileName.str() );
_snapshotCounter++;
_vertex2IndexMap.clear();
logTraceOut( "endIteration(...)" );
}
peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridFileStackImplementation::GridConstructionMovieBatchJobRepositoryForSpacetreeGridFileStackImplementation(
peano::geometry::Geometry& geometry,
int blockSize,
int numberOfBlocks,
int minFillThreshold,
int maxFillThreshold,
const std::string& tempFilePrefix
):
_geometry(geometry),
_cellStack(blockSize,numberOfBlocks,minFillThreshold,maxFillThreshold,tempFilePrefix),
_vertexStack(blockSize,numberOfBlocks,minFillThreshold,maxFillThreshold,tempFilePrefix),
_solverState(),
_gridWithPerformOneRefinement(_vertexStack,_cellStack,_geometry,_solverState),
_gridWithPerformOneRefinementWithoutGridSnapshot(_vertexStack,_cellStack,_geometry,_solverState),
_countPerformOneRefinementRuns(0),
_countPerformOneRefinementWithoutGridSnapshotRuns(0),
_measurePerformOneRefinementCPUTime(0.0),
_measurePerformOneRefinementWithoutGridSnapshotCPUTime(0.0),
_measurePerformOneRefinementCalendarTime(0.0),
_measurePerformOneRefinementWithoutGridSnapshotCalendarTime(0.0),
_repositoryState() {
logTraceIn( "peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridFileStackImplementation(Geometry&)" );
_repositoryState.setAction( GridConstructionMovieBatchJobRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(2 +3);
logTraceOut( "peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridFileStackImplementation(Geometry&)" );
}
void peano::applications::poisson::vhhjacobi::repositories::JacobiBatchJobRepositoryForRegularGridStandardImplementation::restart(
const tarch::la::Vector<DIMENSIONS,int>& numberOfGridPoints,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& computationalDomainOffset,
const tarch::la::Vector<TWO_POWER_D_TIMES_TWO_POWER_D,int>& neighbourRanks
) {
logTraceInWith3Arguments( "restart(...)", numberOfGridPoints, domainSize, computationalDomainOffset );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == JacobiBatchJobRepositoryState::Terminate );
#ifdef Parallel
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset,neighbourRanks);
#else
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset);
#endif
_gridWithSetupExperiment.restart(domainSize,computationalDomainOffset);
_gridWithJacobiStep.restart(domainSize,computationalDomainOffset);
_gridWithJacobiStepAndPlotSolution.restart(domainSize,computationalDomainOffset);
_gridWithPlotSolution.restart(domainSize,computationalDomainOffset);
logTraceOut( "restart(...)" );
}
void peano::applications::pic::demo2::mappings::RegularGrid2PlotSolution::handleCell(
peano::applications::pic::demo2::RegularGridVertex* const vertices,
peano::applications::pic::demo2::RegularGridCell& cell,
const peano::kernel::gridinterface::VertexEnumerator& enumerator
) {
logTraceInWith2Arguments( "handleCell()", enumerator.toString(), cell );
// @todo Insert your code here
assertion( DIMENSIONS==2 || DIMENSIONS==3 );
int vertexIndex[TWO_POWER_D];
dfor2(i)
tarch::la::Vector<DIMENSIONS,double> currentVertexPosition = enumerator.getVertexPosition(i);
assertion1 ( _vertex2IndexMap.find(currentVertexPosition) != _vertex2IndexMap.end(), currentVertexPosition );
assertion1( _vertex2IndexMap[currentVertexPosition]>=0, _vertex2IndexMap[currentVertexPosition] );
vertexIndex[iScalar] = _vertex2IndexMap[currentVertexPosition];
enddforx
int cellIndex;
if (DIMENSIONS==2) {
cellIndex = _cellWriter->plotQuadrangle(vertexIndex);
}
if (DIMENSIONS==3) {
cellIndex = _cellWriter->plotHexahedron(vertexIndex);
}
_cellPWriter->plotCell( cellIndex,cell.getP() );
logTraceOut( "handleCell()" );
}
peano::applications::faxen::lbf::mappings::RegularGrid2MoveParticles::RegularGrid2MoveParticles() {
logTraceIn( "RegularGrid2MoveParticles()" );
_cellVertices = new peano::applications::faxen::lbf::RegularGridBlockVertex*[TWO_POWER_D];
logTraceOut( "RegularGrid2MoveParticles()" );
}
void peano::applications::latticeboltzmann::blocklatticeboltzmann::repositories::BlockLatticeBoltzmannBatchJobRepositoryForRegularGridStandardImplementation::restart(
const tarch::la::Vector<DIMENSIONS,int>& numberOfGridPoints,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& computationalDomainOffset,
const tarch::la::Vector<TWO_POWER_D_TIMES_TWO_POWER_D,int>& neighbourRanks
) {
logTraceInWith3Arguments( "restart(...)", numberOfGridPoints, domainSize, computationalDomainOffset );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == BlockLatticeBoltzmannBatchJobRepositoryState::Terminate );
#ifdef Parallel
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset,neighbourRanks);
#else
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset);
#endif
_gridWithRegularBlockSolverAdapter.restart(domainSize,computationalDomainOffset);
_gridWithInitialiseSpacetreeGridAdapter.restart(domainSize,computationalDomainOffset);
_gridWithBlockCCAOutputAdapter.restart(domainSize,computationalDomainOffset);
_gridWithDynamicRefinementForSpacetreeGridAdapter.restart(domainSize,computationalDomainOffset);
_gridWithBlockVTKOutputAdapter.restart(domainSize,computationalDomainOffset);
_gridWithRegularBlockSolverAndVTKOutputAdapter.restart(domainSize,computationalDomainOffset);
logTraceOut( "restart(...)" );
}
void peano::applications::latticeboltzmann::blocklatticeboltzmann::repositories::BlockLatticeBoltzmannBatchJobRepositoryForRegularGridStandardImplementation::terminate() {
logTraceIn( "terminate(...)" );
_repositoryState.setAction( BlockLatticeBoltzmannBatchJobRepositoryState::Terminate );
#ifdef Parallel
if (tarch::parallel::Node::getInstance().isMasterProcess()) {
tarch::parallel::NodePool::getInstance().broadcastToWorkingNodes(
_repositoryState,
peano::kernel::parallel::SendReceiveBufferPool::getInstance().getIterationManagementTag()
);
}
peano::kernel::parallel::SendReceiveBufferPool::getInstance().terminate();
#endif
_gridContainer.terminate();
_gridWithRegularBlockSolverAdapter.terminate();
_gridWithInitialiseSpacetreeGridAdapter.terminate();
_gridWithBlockCCAOutputAdapter.terminate();
_gridWithDynamicRefinementForSpacetreeGridAdapter.terminate();
_gridWithBlockVTKOutputAdapter.terminate();
_gridWithRegularBlockSolverAndVTKOutputAdapter.terminate();
logTraceOut( "terminate()" );
}
void peanoclaw::repositories::RepositoryArrayStack::terminate() {
logTraceIn( "terminate()" );
_repositoryState.setAction( peanoclaw::records::RepositoryState::Terminate );
#ifdef Parallel
if (tarch::parallel::Node::getInstance().isGlobalMaster()) {
tarch::parallel::NodePool::getInstance().broadcastToWorkingNodes(
_repositoryState,
peano::parallel::SendReceiveBufferPool::getInstance().getIterationManagementTag()
);
}
peano::parallel::SendReceiveBufferPool::getInstance().terminate();
#endif
_gridWithInitialiseGrid.terminate();
_gridWithInitialiseAndValidateGrid.terminate();
_gridWithPlot.terminate();
_gridWithPlotAndValidateGrid.terminate();
_gridWithRemesh.terminate();
_gridWithSolveTimestep.terminate();
_gridWithSolveTimestepAndValidateGrid.terminate();
_gridWithSolveTimestepAndPlot.terminate();
_gridWithSolveTimestepAndPlotAndValidateGrid.terminate();
_gridWithGatherCurrentSolution.terminate();
_gridWithGatherCurrentSolutionAndValidateGrid.terminate();
_gridWithCleanup.terminate();
logTraceOut( "terminate()" );
}
peanoclaw::repositories::RepositoryArrayStack::RepositoryArrayStack(
peano::geometry::Geometry& geometry,
int maximumSizeOfCellInOutStack,
int maximumSizeOfVertexInOutStack,
int maximumSizeOfVertexTemporaryStack
):
_geometry(geometry),
_cellStack(maximumSizeOfCellInOutStack),
_vertexStack(maximumSizeOfVertexInOutStack,maximumSizeOfVertexTemporaryStack),
_solverState(),
_gridWithInitialiseGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithInitialiseAndValidateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithPlot(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithPlotAndValidateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithRemesh(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithSolveTimestep(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithSolveTimestepAndValidateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithSolveTimestepAndPlot(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithSolveTimestepAndPlotAndValidateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithGatherCurrentSolution(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithGatherCurrentSolutionAndValidateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithCleanup(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_repositoryState() {
logTraceIn( "RepositoryArrayStack(Geometry&)" );
_repositoryState.setAction( peanoclaw::records::RepositoryState::Terminate );
peano::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(peanoclaw::records::RepositoryState::NumberOfAdapters);
#ifdef Parallel
peano::parallel::loadbalancing::Oracle::getInstance().setNumberOfOracles(peanoclaw::records::RepositoryState::NumberOfAdapters);
#endif
logTraceOut( "RepositoryArrayStack(Geometry&)" );
}
peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation::GridConstructionMovieBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(
peano::geometry::Geometry& geometry,
int initialStackSize
):
_geometry(geometry),
_cellStack(initialStackSize),
_vertexStack(initialStackSize),
_solverState(),
_gridWithPerformOneRefinement(_vertexStack,_cellStack,_geometry,_solverState),
_gridWithPerformOneRefinementWithoutGridSnapshot(_vertexStack,_cellStack,_geometry,_solverState),
_countPerformOneRefinementRuns(0),
_countPerformOneRefinementWithoutGridSnapshotRuns(0),
_measurePerformOneRefinementCPUTime(0.0),
_measurePerformOneRefinementWithoutGridSnapshotCPUTime(0.0),
_measurePerformOneRefinementCalendarTime(0.0),
_measurePerformOneRefinementWithoutGridSnapshotCalendarTime(0.0),
_repositoryState() {
logTraceIn( "peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(Geometry&)" );
_repositoryState.setAction( GridConstructionMovieBatchJobRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(2 +3);
logTraceOut( "peano::applications::puregrid::repositories::GridConstructionMovieBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(Geometry&)" );
}
void dem::repositories::RepositorySTDStack::restart(
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& domainOffset,
int domainLevel,
const tarch::la::Vector<DIMENSIONS,int>& positionOfCentralElementWithRespectToCoarserRemoteLevel
) {
logTraceInWith4Arguments( "restart(...)", domainSize, domainOffset, domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isGlobalMaster());
#endif
logInfo( "restart(...)", "start node for subdomain " << domainOffset << "x" << domainSize << " on level " << domainLevel << " with master " << tarch::parallel::NodePool::getInstance().getMasterRank() );
assertion( _repositoryState.getAction() == dem::records::RepositoryState::Terminate );
_vertexStack.clear();
_cellStack.clear();
_gridWithCreateGrid.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithCreateGridAndPlot.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStep.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStepAndPlot.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStepOnDynamicGrid.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStepAndPlotOnDynamicGrid.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStepOnReluctantDynamicGrid.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_gridWithTimeStepAndPlotOnReluctantDynamicGrid.restart(domainSize,domainOffset,domainLevel, positionOfCentralElementWithRespectToCoarserRemoteLevel);
_solverState.restart();
logTraceOut( "restart(...)" );
}
dem::repositories::RepositorySTDStack::RepositorySTDStack(
peano::geometry::Geometry& geometry
):
_geometry(geometry),
_cellStack(),
_vertexStack(),
_solverState(),
_gridWithCreateGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithCreateGridAndPlot(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStep(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStepAndPlot(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStepOnDynamicGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStepAndPlotOnDynamicGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStepOnReluctantDynamicGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_gridWithTimeStepAndPlotOnReluctantDynamicGrid(_vertexStack,_cellStack,_geometry,_solverState,_regularGridContainer,_traversalOrderOnTopLevel),
_repositoryState() {
logTraceIn( "RepositorySTDStack(Geometry&)" );
_repositoryState.setAction( dem::records::RepositoryState::Terminate );
peano::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(dem::records::RepositoryState::NumberOfAdapters);
#ifdef Parallel
peano::parallel::loadbalancing::Oracle::getInstance().setNumberOfOracles(dem::records::RepositoryState::NumberOfAdapters);
#endif
logTraceOut( "RepositorySTDStack(Geometry&)" );
}
void peano::applications::faxen::repositories::FaxenBatchJobRepositoryForSpacetreeGridArrayStackImplementation::restart(
const tarch::la::Vector<DIMENSIONS,bool>& evenFlags,
const tarch::la::Vector<THREE_POWER_D,int>& traversalOrderOfNeighbours,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& domainOffset,
int domainLevel
) {
logTraceInWith2Arguments( "restart(...)", evenFlags, traversalOrderOfNeighbours );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == FaxenBatchJobRepositoryState::Terminate );
_vertexStack.clear();
_cellStack.clear();
_gridWithInitialize.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithInitializeAndSetBoundary.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithPlotGrid.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithControlTimeStep.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetVelocitiesBoundary.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetScenarioBoundary.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithComputeVelocitiesDerivatives.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithComputeRightHandSide.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetZeroPressureBoundary.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSetPressureBoundary.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithSORStep.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithComputeResidualNorm.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithComputeVelocities.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithPlotSolution.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
logTraceOut( "restart(...)" );
}
void particles::pidt::mappings::Redistribute::prepareCopyToRemoteNode(
particles::pidt::Vertex& localVertex,
int toRank,
const tarch::la::Vector<DIMENSIONS,double>& x,
const tarch::la::Vector<DIMENSIONS,double>& h,
int level
) {
logTraceInWith5Arguments( "prepareCopyToRemoteNode(...)", localVertex, toRank, x, h, level );
const ParticleContainer destinationParticles = MoveParticles::extractAllParticlesFromDualCellBelongingToOneRank(
localVertex.getVertexIndex(),
localVertex,
toRank,
x,
h
);
ParticleHeap::getInstance().sendData(
destinationParticles,
toRank,
x,
level,
peano::heap::ForkOrJoinCommunication
);
logTraceOut( "prepareCopyToRemoteNode(...)" );
}
void peano::applications::faxen::repositories::FaxenBatchJobRepositoryForSpacetreeGridArrayStackImplementation::terminate() {
logTraceIn( "terminate(...)" );
_repositoryState.setAction( FaxenBatchJobRepositoryState::Terminate );
#ifdef Parallel
if (tarch::parallel::Node::getInstance().isMasterProcess()) {
tarch::parallel::NodePool::getInstance().broadcastToWorkingNodes(
_repositoryState,
peano::kernel::parallel::SendReceiveBufferPool::getInstance().getIterationManagementTag()
);
}
peano::kernel::parallel::SendReceiveBufferPool::getInstance().terminate();
#endif
_gridWithInitialize.terminate();
_gridWithInitializeAndSetBoundary.terminate();
_gridWithPlotGrid.terminate();
_gridWithControlTimeStep.terminate();
_gridWithSetVelocitiesBoundary.terminate();
_gridWithSetScenarioBoundary.terminate();
_gridWithComputeVelocitiesDerivatives.terminate();
_gridWithComputeRightHandSide.terminate();
_gridWithSetZeroPressureBoundary.terminate();
_gridWithSetPressureBoundary.terminate();
_gridWithSORStep.terminate();
_gridWithComputeResidualNorm.terminate();
_gridWithComputeVelocities.terminate();
_gridWithPlotSolution.terminate();
logTraceOut( "terminate()" );
}
peano::applications::navierstokes::prototype1::mappings::RegularGrid2UpdateVelocity::RegularGrid2UpdateVelocity()
: _elementType(ELEMENT_TYPE_UNDEF)
{
logTraceIn( "RegularGrid2UpdateVelocity()" );
// @todo Insert your code here
logTraceOut( "RegularGrid2UpdateVelocity()" );
}
peano::applications::faxen::lbf::mappings::RegularGrid2MoveParticles::~RegularGrid2MoveParticles() {
logTraceIn( "~RegularGrid2MoveParticles()" );
delete[] _cellVertices;
logTraceOut( "~RegularGrid2MoveParticles()" );
}
peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridArrayStackImplementation::PrototypeRepositoryForSpacetreeGridArrayStackImplementation(
peano::geometry::Geometry& geometry,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& domainOffset,
int maximumSizeOfCellInOutStack,
int maximumSizeOfVertexInOutStack,
int maximumSizeOfVertexTemporaryStack
):
_geometry(geometry),
_cellStack(maximumSizeOfCellInOutStack),
_vertexStack(maximumSizeOfVertexInOutStack, maximumSizeOfVertexTemporaryStack),
_solverState(),
_repositoryState() {
logTraceIn( "peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridArrayStackImplementation(...)" );
_repositoryState.setAction( PrototypeRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(0);
logTraceOut( "peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridArrayStackImplementation(...)" );
}
void pyclaw_peano_evolveToTime(double time, peanoclaw::runners::PeanoClawLibraryRunner* runner) {
#ifdef USE_VALGRIND
CALLGRIND_START_INSTRUMENTATION;
CALLGRIND_ZERO_STATS;
#endif
static tarch::logging::Log _log("::pyclawBindings");
logTraceInWith1Argument("pyclaw_peano_evolveToTime", time);
assertionMsg(runner!=0, "call pyclaw_peano_new before calling pyclaw_peano_run.");
if(_calledFromPython) {
_pythonState = PyGILState_Ensure();
}
runner->evolveToTime(time);
if(_calledFromPython) {
PyGILState_Release(_pythonState);
}
#ifdef USE_VALGRIND
CALLGRIND_STOP_INSTRUMENTATION;
#endif
logTraceOut("pyclaw_peano_evolveToTime");
}
void peano::applications::navierstokes::prototype1::repositories::PrototypeRepositoryForRegularGridStandardImplementation::restart(
const tarch::la::Vector<DIMENSIONS,int>& numberOfGridPoints,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& computationalDomainOffset,
const tarch::la::Vector<TWO_POWER_D_TIMES_TWO_POWER_D,int>& neighbourRanks
) {
logTraceInWith3Arguments( "restart(...)", numberOfGridPoints, domainSize, computationalDomainOffset );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == PrototypeRepositoryState::Terminate );
#ifdef Parallel
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset,neighbourRanks);
#else
_gridContainer.restart( numberOfGridPoints,domainSize,computationalDomainOffset);
#endif
_gridWithInitialiseScenario.restart(domainSize,computationalDomainOffset);
_gridWithMergeA.restart(domainSize,computationalDomainOffset);
_gridWithCalculateF.restart(domainSize,computationalDomainOffset);
_gridWithCalculatePPERHS.restart(domainSize,computationalDomainOffset);
_gridWithGaussSeidelForEnhancedDivFree.restart(domainSize,computationalDomainOffset);
_gridWithUpdateVelocity.restart(domainSize,computationalDomainOffset);
_gridWithPlotSolutionVTK.restart(domainSize,computationalDomainOffset);
_gridWithPlotRegularSolutionVTK.restart(domainSize,computationalDomainOffset);
_gridWithUpdateScenario.restart(domainSize,computationalDomainOffset);
logTraceOut( "restart(...)" );
}
void peano::applications::poisson::jacobitutorial::mappings::RegularGrid2PlotSolution::handleCell(
peano::applications::poisson::jacobitutorial::RegularGridVertex* const vertices,
peano::applications::poisson::jacobitutorial::RegularGridCell& cell,
const peano::kernel::gridinterface::VertexEnumerator& enumerator
) {
logTraceInWith2Arguments( "handleCell()", enumerator.toString(), cell );
/**
* --- inserted manually ---
*
* This is just cell plot mechanics. As the cells have no properties, it is
* exactly the same what the grid plotter which is generated does.
*/
tarch::multicore::Lock localLock( _outputStreamSemaphore );
assertion( DIMENSIONS==2 || DIMENSIONS==3 );
int vertexIndex[TWO_POWER_D];
dfor2(i)
tarch::la::Vector<DIMENSIONS,double> currentVertexPosition = enumerator.getVertexPosition(i);
assertion1 ( _vertex2IndexMap.find(currentVertexPosition) != _vertex2IndexMap.end(), currentVertexPosition );
vertexIndex[iScalar] = _vertex2IndexMap[currentVertexPosition];
enddforx
if (DIMENSIONS==2) {
_cellWriter->plotQuadrangle(vertexIndex);
}
if (DIMENSIONS==3) {
_cellWriter->plotHexahedron(vertexIndex);
}
logTraceOut( "handleCell()" );
}
void peano::applications::navierstokes::prototype1::repositories::PrototypeRepositoryForRegularGridStandardImplementation::terminate() {
logTraceIn( "terminate(...)" );
_repositoryState.setAction( PrototypeRepositoryState::Terminate );
#ifdef Parallel
if (tarch::parallel::Node::getInstance().isMasterProcess()) {
tarch::parallel::NodePool::getInstance().broadcastToWorkingNodes(
_repositoryState,
peano::kernel::parallel::SendReceiveBufferPool::getInstance().getIterationManagementTag()
);
}
peano::kernel::parallel::SendReceiveBufferPool::getInstance().terminate();
#endif
_gridContainer.terminate();
_gridWithInitialiseScenario.terminate();
_gridWithMergeA.terminate();
_gridWithCalculateF.terminate();
_gridWithCalculatePPERHS.terminate();
_gridWithGaussSeidelForEnhancedDivFree.terminate();
_gridWithUpdateVelocity.terminate();
_gridWithPlotSolutionVTK.terminate();
_gridWithPlotRegularSolutionVTK.terminate();
_gridWithUpdateScenario.terminate();
logTraceOut( "terminate()" );
}
peano::applications::poisson::vhhjacobi::repositories::JacobiBatchJobRepositoryForRegularGridStandardImplementation::JacobiBatchJobRepositoryForRegularGridStandardImplementation(
peano::geometry::Geometry& geometry
):
_geometry(geometry),
_gridContainer(),
_gridWithSetupExperiment(_gridContainer,_geometry, _solverState),
_gridWithJacobiStep(_gridContainer,_geometry, _solverState),
_gridWithJacobiStepAndPlotSolution(_gridContainer,_geometry, _solverState),
_gridWithPlotSolution(_gridContainer,_geometry, _solverState),
_countSetupExperimentRuns(0),
_countJacobiStepRuns(0),
_countJacobiStepAndPlotSolutionRuns(0),
_countPlotSolutionRuns(0),
_measureSetupExperimentCPUTime(0.0),
_measureJacobiStepCPUTime(0.0),
_measureJacobiStepAndPlotSolutionCPUTime(0.0),
_measurePlotSolutionCPUTime(0.0),
_measureSetupExperimentCalendarTime(0.0),
_measureJacobiStepCalendarTime(0.0),
_measureJacobiStepAndPlotSolutionCalendarTime(0.0),
_measurePlotSolutionCalendarTime(0.0),
_solverState(),
_repositoryState() {
logTraceIn( "peano::applications::poisson::vhhjacobi::repositories::JacobiBatchJobRepositoryForRegularGridStandardImplementation(Geometry&)" );
_repositoryState.setAction( JacobiBatchJobRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(4 +3 );
logTraceOut( "peano::applications::poisson::vhhjacobi::repositories::JacobiBatchJobRepositoryForRegularGridStandardImplementation(Geometry&)" );
}
void peanoclaw::interSubgridCommunication::GridLevelTransfer::updatePatchStateDuringMergeWithWorker(
int localCellDescriptionIndex,
int remoteCellDescriptionIndex
) {
logTraceInWith1Argument("updatePatchStateDuringMergeWithWorker", localCellDescriptionIndex);
assertion(localCellDescriptionIndex != -1);
CellDescription& localCellDescription = CellDescriptionHeap::getInstance().getData(localCellDescriptionIndex).at(0);
Patch localPatch(localCellDescription);
if(remoteCellDescriptionIndex != -1) {
CellDescription& remoteCellDescription = CellDescriptionHeap::getInstance().getData(remoteCellDescriptionIndex).at(0);
assertion1(localCellDescriptionIndex != -1, localPatch);
if(remoteCellDescription.getUIndex() != -1) {
assertion1(localPatch.isVirtual() || localPatch.isLeaf(), localPatch);
//Delete current content of patch
DataHeap::getInstance().deleteData(localPatch.getUIndex());
//Merge
localCellDescription.setUIndex(remoteCellDescription.getUIndex());
}
CellDescriptionHeap::getInstance().deleteData(remoteCellDescriptionIndex);
}
logTraceOut("updatePatchStateDuringMergeWithWorker");
}
void peano::applications::heatequation::timestepping::adapters::SpacetreeGrid2PlotGrid::beginIteration(
peano::applications::heatequation::timestepping::SpacetreeGridState& solverState
) {
logTraceInWith1Argument( "beginIteration(...)", solverState );
#ifdef SharedTBB
Vertex2IndexMapSemaphore::scoped_lock localLock(_vertex2IndexMapSemaphore);
#elif SharedOMP
#pragma omp critical
#endif
_vtkWriter.clear();
_vertexWriter = _vtkWriter.createVertexWriter();
_cellWriter = _vtkWriter.createCellWriter();
#ifdef Parallel
_cellDeltaWriter = _vtkWriter.createCellDataWriter( "delta" ,1);
_cellWeightWriter = _vtkWriter.createCellDataWriter( "weight" ,1);
#endif
_vertexTypeWriter = _vtkWriter.createVertexDataWriter(peano::applications::heatequation::timestepping::SpacetreeGridSingleStepVertex::Records::getInsideOutsideDomainMapping() ,1);
_vertexRefinementControlWriter = _vtkWriter.createVertexDataWriter(peano::applications::heatequation::timestepping::SpacetreeGridSingleStepVertex::Records::getRefinementControlMapping() ,1);
_vertexMaximumSubtreeWriter = _vtkWriter.createVertexDataWriter("max-subtree" ,1);
logTraceOut( "beginIteration(...)" );
}
peano::applications::pic::demo::repositories::PICBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation::PICBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(
peano::geometry::Geometry& geometry,
int initialStackSize
):
_geometry(geometry),
_cellStack(initialStackSize),
_vertexStack(initialStackSize),
_solverState(),
_gridWithSetupExperiment(_vertexStack,_cellStack,_geometry,_solverState),
_gridWithSetupExperimentAndPlot(_vertexStack,_cellStack,_geometry,_solverState),
_countSetupExperimentRuns(0),
_countSetupExperimentAndPlotRuns(0),
_measureSetupExperimentCPUTime(0.0),
_measureSetupExperimentAndPlotCPUTime(0.0),
_measureSetupExperimentCalendarTime(0.0),
_measureSetupExperimentAndPlotCalendarTime(0.0),
_repositoryState() {
logTraceIn( "peano::applications::pic::demo::repositories::PICBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(Geometry&)" );
_repositoryState.setAction( PICBatchJobRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(2 +3);
logTraceOut( "peano::applications::pic::demo::repositories::PICBatchJobRepositoryForSpacetreeGridSTDDoubleStackImplementation(Geometry&)" );
}
void peano::applications::latticeboltzmann::blocklatticeboltzmann::repositories::BlockLatticeBoltzmannBatchJobRepositoryForSpacetreeGridSTDStackImplementation::restart(
const tarch::la::Vector<DIMENSIONS,bool>& evenFlags,
const tarch::la::Vector<THREE_POWER_D,int>& traversalOrderOfNeighbours,
const tarch::la::Vector<DIMENSIONS,double>& domainSize,
const tarch::la::Vector<DIMENSIONS,double>& domainOffset,
int domainLevel
) {
logTraceInWith2Arguments( "restart(...)", evenFlags, traversalOrderOfNeighbours );
#ifdef Parallel
assertion( !tarch::parallel::Node::getInstance().isMasterProcess());
#endif
assertion( _repositoryState.getAction() == BlockLatticeBoltzmannBatchJobRepositoryState::Terminate );
_vertexStack.clear();
_cellStack.clear();
_gridWithRegularBlockSolverAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithInitialiseSpacetreeGridAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithBlockCCAOutputAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithDynamicRefinementForSpacetreeGridAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithBlockVTKOutputAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
_gridWithRegularBlockSolverAndVTKOutputAdapter.restart(traversalOrderOfNeighbours,_solverState,domainSize,domainOffset,domainLevel);
logTraceOut( "restart(...)" );
}
peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridFileStackImplementation::PrototypeRepositoryForSpacetreeGridFileStackImplementation(
peano::geometry::Geometry& geometry,
int blockSize,
int numberOfBlocks,
int minFillThreshold,
int maxFillThreshold,
const std::string& tempFilePrefix
):
_geometry(geometry),
_cellStack(blockSize,numberOfBlocks,minFillThreshold,maxFillThreshold,tempFilePrefix),
_vertexStack(blockSize,numberOfBlocks,minFillThreshold,maxFillThreshold,tempFilePrefix),
_solverState(),
_repositoryState() {
logTraceIn( "peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridFileStackImplementation(Geometry&)" );
_repositoryState.setAction( PrototypeRepositoryState::Terminate );
peano::kernel::datatraversal::autotuning::Oracle::getInstance().setNumberOfOracles(0);
logTraceOut( "peano::applications::navierstokes::prototype2::repositories::PrototypeRepositoryForSpacetreeGridFileStackImplementation(Geometry&)" );
}