void regression_serv::set_config(const string& config) {
core::common::jsonconfig::config config_root(lexical_cast<json>(config));
regression_serv_config conf =
core::common::jsonconfig::config_cast_check<regression_serv_config>(
config_root);
config_ = config;
core::common::jsonconfig::config param;
if (conf.parameter) {
param = *conf.parameter;
}
shared_ptr<core::storage::storage_base> model = make_model(argv());
regression_.reset(
new core::driver::regression(
model,
core::regression::regression_factory::create_regression(
conf.method, param, model),
core::fv_converter::make_fv_converter(conf.converter)));
mixer_->set_mixable_holder(regression_->get_mixable_holder());
// TODO(kuenishi): switch the function when set_config is done
// because mixing method differs btwn PA, CW, etc...
LOG(INFO) << "config loaded: " << config;
}
arp::arp(QWidget *parent) :
QWidget(parent),
ui(new Ui::arp)
{
ui->setupUi(this);
make_model();
}
fakeap::fakeap(QWidget *parent) :
QWidget(parent),
ui(new Ui::fakeap)
{
ui->setupUi(this);
connect(ui->fakelistButton, SIGNAL(clicked()),SLOT(require_fake_list()));
make_model();
}
aplist::aplist(QWidget *parent) :
QWidget(parent),
ui(new Ui::aplist)
{
ui->setupUi(this);
// ui->aplistButton->setEnabled(false);
connect(ui->aplistButton, SIGNAL(clicked()),SLOT(require_ap_list()));
make_model();
get_veriyed();
}
int recommender_serv::set_config(config_data config) {
LOG(INFO) << __func__;
shared_ptr<fv_converter::datum_to_fv_converter> converter
= fv_converter::make_fv_converter(config.converter);
config_ = config;
converter_ = converter;
rcmdr_.set_model(make_model());
(*converter_).set_weight_manager(wm_.get_model());
return 0;
}
int recommender_serv::set_config(config_data config)
{
config_ = config;
shared_ptr<fv_converter::datum_to_fv_converter> converter(new fv_converter::datum_to_fv_converter);
fv_converter::converter_config c;
convert<jubatus::converter_config, fv_converter::converter_config>(config.converter, c);
fv_converter::initialize_converter(c, *converter);
converter_ = converter;
rcmdr_.set_model(make_model());
return 0;
}
classifier_serv::classifier_serv(const framework::server_argv& a)
:framework::jubatus_serv(a)
{
clsfer_.set_model(make_model());
register_mixable(framework::mixable_cast(&clsfer_));
wm_.wm_ = common::cshared_ptr<fv_converter::weight_manager>(new weight_manager);
wm_.set_model(wm_.wm_);
register_mixable(framework::mixable_cast(&wm_));
}
regression_serv::regression_serv(const framework::server_argv& a,
const cshared_ptr<lock_service>& zk)
: server_base(a) {
gresser_.set_model(make_model(a));
wm_.set_model(mixable_weight_manager::model_ptr(new weight_manager));
mixer_.reset(mixer::create_mixer(a, zk));
mixable_holder_.reset(new mixable_holder());
mixer_->set_mixable_holder(mixable_holder_);
mixable_holder_->register_mixable(&gresser_);
mixable_holder_->register_mixable(&wm_);
}
bool recommender_serv::set_config(std::string config) {
jsonconfig::config conf_root(lexical_cast<json>(config));
recommender_serv_config conf =
jsonconfig::config_cast_check<recommender_serv_config>(conf_root);
shared_ptr<fv_converter::datum_to_fv_converter> converter =
fv_converter::make_fv_converter(conf.converter);
config_ = config;
converter_ = converter;
rcmdr_.set_model(make_model(conf));
(*converter_).set_weight_manager(wm_.get_model());
LOG(INFO) << "config loaded: " << config;
return true;
}
/*************************************************************************
* Entry point for pmp_bf
*************************************************************************/
int main(int argc, char *argv[]) {
char* bg_filename = NULL;
char* motif_name = "motif"; // Use this motif name in the output.
STRING_LIST_T* selected_motifs = NULL;
double fg_rate = 1.0;
double bg_rate = 1.0;
double purine_pyrimidine = 1.0; // r
double transition_transversion = 0.5; // R
double pseudocount = 0.1;
GAP_SUPPORT_T gap_support = SKIP_GAPS;
MODEL_TYPE_T model_type = F81_MODEL;
BOOLEAN_T use_halpern_bruno = FALSE;
char* ustar_label = NULL; // TLB; create uniform star tree
int i;
program_name = "pmp_bf";
/**********************************************
* COMMAND LINE PROCESSING
**********************************************/
// Define command line options. (FIXME: Repeated code)
// FIXME: Note that if you add or remove options you
// must change n_options.
int n_options = 12;
cmdoption const pmp_options[] = {
{"hb", NO_VALUE},
{"ustar", REQUIRED_VALUE},
{"model", REQUIRED_VALUE},
{"pur-pyr", REQUIRED_VALUE},
{"transition-transversion", REQUIRED_VALUE},
{"bg", REQUIRED_VALUE},
{"fg", REQUIRED_VALUE},
{"motif", REQUIRED_VALUE},
{"motif-name", REQUIRED_VALUE},
{"bgfile", REQUIRED_VALUE},
{"pseudocount", REQUIRED_VALUE},
{"verbosity", REQUIRED_VALUE}
};
int option_index = 0;
// Define the usage message.
char usage[1000] = "";
strcat(usage, "USAGE: pmp [options] <tree file> <MEME file>\n");
strcat(usage, "\n");
strcat(usage, " Options:\n");
// Evolutionary model parameters.
strcat(usage, " --hb\n");
strcat(usage, " --model single|average|jc|k2|f81|f84|hky|tn");
strcat(usage, " (default=f81)\n");
strcat(usage, " --pur-pyr <float> (default=1.0)\n");
strcat(usage, " --transition-transversion <float> (default=0.5)\n");
strcat(usage, " --bg <float> (default=1.0)\n");
strcat(usage, " --fg <float> (default=1.0)\n");
// Motif parameters.
strcat(usage, " --motif <id> (default=all)\n");
strcat(usage, " --motif-name <string> (default from motif file)\n");
// Miscellaneous parameters
strcat(usage, " --bgfile <background> (default from motif file)\n");
strcat(usage, " --pseudocount <float> (default=0.1)\n");
strcat(usage, " --ustar <label>\n"); // TLB; create uniform star tree
strcat(usage, " --verbosity [1|2|3|4] (default 2)\n");
strcat(usage, "\n Prints the FP and FN rate at each of 10000 score values.\n");
strcat(usage, "\n Output format: [<motif_id> score <score> FPR <fpr> TPR <tpr>]+\n");
// Parse the command line.
if (simple_setopt(argc, argv, n_options, pmp_options) != NO_ERROR) {
die("Error processing command line options: option name too long.\n");
}
while (TRUE) {
int c = 0;
char* option_name = NULL;
char* option_value = NULL;
const char * message = NULL;
// Read the next option, and break if we're done.
c = simple_getopt(&option_name, &option_value, &option_index);
if (c == 0) {
break;
} else if (c < 0) {
(void) simple_getopterror(&message);
die("Error processing command line options (%s)\n", message);
}
if (strcmp(option_name, "model") == 0) {
if (strcmp(option_value, "jc") == 0) {
model_type = JC_MODEL;
} else if (strcmp(option_value, "k2") == 0) {
model_type = K2_MODEL;
} else if (strcmp(option_value, "f81") == 0) {
model_type = F81_MODEL;
} else if (strcmp(option_value, "f84") == 0) {
model_type = F84_MODEL;
} else if (strcmp(option_value, "hky") == 0) {
model_type = HKY_MODEL;
} else if (strcmp(option_value, "tn") == 0) {
model_type = TAMURA_NEI_MODEL;
} else if (strcmp(option_value, "single") == 0) {
model_type = SINGLE_MODEL;
} else if (strcmp(option_value, "average") == 0) {
model_type = AVERAGE_MODEL;
} else {
die("Unknown model: %s\n", option_value);
}
} else if (strcmp(option_name, "hb") == 0){
use_halpern_bruno = TRUE;
} else if (strcmp(option_name, "ustar") == 0){ // TLB; create uniform star tree
ustar_label = option_value;
} else if (strcmp(option_name, "pur-pyr") == 0){
purine_pyrimidine = atof(option_value);
} else if (strcmp(option_name, "transition-transversion") == 0){
transition_transversion = atof(option_value);
} else if (strcmp(option_name, "bg") == 0){
bg_rate = atof(option_value);
} else if (strcmp(option_name, "fg") == 0){
fg_rate = atof(option_value);
} else if (strcmp(option_name, "motif") == 0){
if (selected_motifs == NULL) {
selected_motifs = new_string_list();
}
add_string(option_value, selected_motifs);
} else if (strcmp(option_name, "motif-name") == 0){
motif_name = option_value;
} else if (strcmp(option_name, "bgfile") == 0){
bg_filename = option_value;
} else if (strcmp(option_name, "pseudocount") == 0){
pseudocount = atof(option_value);
} else if (strcmp(option_name, "verbosity") == 0){
verbosity = atoi(option_value);
}
}
// Must have tree and motif file names
if (argc != option_index + 2) {
fprintf(stderr, "%s", usage);
exit(EXIT_FAILURE);
}
/**********************************************
* Read the phylogenetic tree.
**********************************************/
char* tree_filename = NULL;
TREE_T* tree = NULL;
tree_filename = argv[option_index];
option_index++;
tree = read_tree_from_file(tree_filename);
// get the species names
STRING_LIST_T* alignment_species = make_leaf_list(tree);
char *root_label = get_label(tree); // in case target in center
if (strlen(root_label)>0) add_string(root_label, alignment_species);
//write_string_list(" ", alignment_species, stderr);
// TLB; Convert the tree to a uniform star tree with
// the target sequence at its center.
if (ustar_label != NULL) {
tree = convert_to_uniform_star_tree(tree, ustar_label);
if (tree == NULL)
die("Tree or alignment missing target %s\n", ustar_label);
if (verbosity >= NORMAL_VERBOSE) {
fprintf(stderr,
"Target %s placed at center of uniform (d=%.3f) star tree:\n",
ustar_label, get_total_length(tree) / get_num_children(tree)
);
write_tree(tree, stderr);
}
}
/**********************************************
* Read the motifs.
**********************************************/
char* meme_filename = argv[option_index];
option_index++;
int num_motifs = 0;
MREAD_T *mread;
ALPH_T alph;
ARRAYLST_T *motifs;
ARRAY_T *bg_freqs;
mread = mread_create(meme_filename, OPEN_MFILE);
mread_set_bg_source(mread, bg_filename);
mread_set_pseudocount(mread, pseudocount);
// read motifs
motifs = mread_load(mread, NULL);
alph = mread_get_alphabet(mread);
bg_freqs = mread_get_background(mread);
// check
if (arraylst_size(motifs) == 0) die("No motifs in %s.", meme_filename);
// TLB; need to resize bg_freqs array to ALPH_SIZE items
// or copy array breaks in HB mode. This throws away
// the freqs for the ambiguous characters;
int asize = alph_size(alph, ALPH_SIZE);
resize_array(bg_freqs, asize);
/**************************************************************
* Compute probability distributions for each of the selected motifs.
**************************************************************/
int motif_index;
for (motif_index = 0; motif_index < arraylst_size(motifs); motif_index++) {
MOTIF_T* motif = (MOTIF_T*)arraylst_get(motif_index, motifs);
char* motif_id = get_motif_id(motif);
char* bare_motif_id = motif_id;
// We may have specified on the command line that
// only certain motifs were to be used.
if (selected_motifs != NULL) {
if (*bare_motif_id == '+' || *bare_motif_id == '-') {
// The selected motif id won't included a strand indicator.
bare_motif_id++;
}
if (have_string(bare_motif_id, selected_motifs) == FALSE) {
continue;
}
}
if (verbosity >= NORMAL_VERBOSE) {
fprintf(
stderr,
"Using motif %s of width %d.\n",
motif_id, get_motif_length(motif)
);
}
// Build an array of evolutionary models for each position in the motif.
EVOMODEL_T** models = make_motif_models(
motif,
bg_freqs,
model_type,
fg_rate,
bg_rate,
purine_pyrimidine,
transition_transversion,
use_halpern_bruno
);
// Get the frequencies under the background model (row 0)
// and position-dependent scores (rows 1..w)
// for each possible alignment column.
MATRIX_T* pssm_matrix = build_alignment_pssm_matrix(
alph,
alignment_species,
get_motif_length(motif) + 1,
models,
tree,
gap_support
);
ARRAY_T* alignment_col_freqs = allocate_array(get_num_cols(pssm_matrix));
copy_array(get_matrix_row(0, pssm_matrix), alignment_col_freqs);
remove_matrix_row(0, pssm_matrix); // throw away first row
//print_col_frequencies(alph, alignment_col_freqs);
//
// Get the position-dependent null model alignment column frequencies
//
int w = get_motif_length(motif);
int ncols = get_num_cols(pssm_matrix);
MATRIX_T* pos_dep_bkg = allocate_matrix(w, ncols);
for (i=0; i<w; i++) {
// get the evo model corresponding to this column of the motif
// and store it as the first evolutionary model.
myfree(models[0]);
// Use motif PSFM for equilibrium freqs. for model.
ARRAY_T* site_specific_freqs = allocate_array(asize);
int j = 0;
for(j = 0; j < asize; j++) {
double value = get_matrix_cell(i, j, get_motif_freqs(motif));
set_array_item(j, value, site_specific_freqs);
}
if (use_halpern_bruno == FALSE) {
models[0] = make_model(
model_type,
fg_rate,
transition_transversion,
purine_pyrimidine,
site_specific_freqs,
NULL
);
} else {
models[0] = make_model(
model_type,
fg_rate,
transition_transversion,
purine_pyrimidine,
bg_freqs,
site_specific_freqs
);
}
// get the alignment column frequencies using this model
MATRIX_T* tmp_pssm_matrix = build_alignment_pssm_matrix(
alph,
alignment_species,
2, // only interested in freqs under bkg
models,
tree,
gap_support
);
// assemble the position-dependent background alignment column freqs.
set_matrix_row(i, get_matrix_row(0, tmp_pssm_matrix), pos_dep_bkg);
// chuck the pssm (not his real name)
free_matrix(tmp_pssm_matrix);
}
//
// Compute and print the score distribution under the background model
// and under the (position-dependent) motif model.
//
int range = 10000; // 10^4 gives same result as 10^5, but 10^3 differs
// under background model
PSSM_T* pssm = build_matrix_pssm(alph, pssm_matrix, alignment_col_freqs, range);
// under position-dependent background (motif) model
PSSM_T* pssm_pos_dep = build_matrix_pssm(alph, pssm_matrix, alignment_col_freqs, range);
get_pv_lookup_pos_dep(
pssm_pos_dep,
pos_dep_bkg,
NULL // no priors used
);
// print FP and FN distributions
int num_items = get_pssm_pv_length(pssm_pos_dep);
for (i=0; i<num_items; i++) {
double pvf = get_pssm_pv(i, pssm);
double pvt = get_pssm_pv(i, pssm_pos_dep);
double fpr = pvf;
double fnr = 1 - pvt;
if (fpr >= 0.99999 || fnr == 0) continue;
printf("%s score %d FPR %.3g FNR %.3g\n", motif_id, i, fpr, fnr);
}
// free stuff
free_pssm(pssm);
free_pssm(pssm_pos_dep);
if (models != NULL) {
int model_index;
int num_models = get_motif_length(motif) + 1;
for (model_index = 0; model_index < num_models; model_index++) {
free_model(models[model_index]);
}
myfree(models);
}
} // motif
arraylst_destroy(destroy_motif, motifs);
/**********************************************
* Clean up.
**********************************************/
// TLB may have encountered a memory corruption bug here
// CEG has not been able to reproduce it. valgrind says all is well.
free_array(bg_freqs);
free_tree(TRUE, tree);
free_string_list(selected_motifs);
return(0);
} // main
//-----------------------------------------------------------------------------
int main()
{
{
// Generate some data
plJointDistribution orig = make_model();
generate_data(orig, "model_asia.csv", 10000);
plCSVDataDescriptor dataset("model_asia.csv", orig.get_variables());
plNodeScoreBIC node_score(dataset);
std::cout << "Original model: " << orig << std::endl
<< "BIC score of the original model on the whole dataset: "
<< node_score(orig) << std::endl;
save("model_asia", orig);
}
plSymbol A("A", PL_BINARY_TYPE); // visit to Asia?
plSymbol S("S", PL_BINARY_TYPE); // Smoker?
plSymbol T("T", PL_BINARY_TYPE); // has Tuberculosis
plSymbol L("L", PL_BINARY_TYPE); // has Lung cancer
plSymbol B("B", PL_BINARY_TYPE); // has Bronchitis
plSymbol O("O", PL_BINARY_TYPE); // has tuberculosis Or cancer
plSymbol X("X", PL_BINARY_TYPE); // positive X-Ray
plSymbol D("D", PL_BINARY_TYPE); // Dyspnoea?
plVariablesConjunction variables = A^S^T^L^B^O^X^D;
plCSVDataDescriptor dataset("model_asia.csv", variables);
plStructureLearner learner(variables);
// Learn the dependancy structure between our variables from the
// dataset, using the Directed Maximum Spanning Tree algorithm.
unsigned int root_index = 0; // using 'A' as the root node.
std::vector<plSymbol> order;
plEdgeScoreBIC edge_score(dataset);
bool result = learner.DMST(edge_score, order, variables[root_index]);
plJointDistribution result_dmst = learner.get_joint_distribution(dataset);
// Apply the GS algorithm with BIC score on the same dataset.
// Use the output of the DMST algo as a starting point.
plNodeScoreBIC node_score(dataset);
learner.GS(node_score);
plJointDistribution result_gs = learner.get_joint_distribution(dataset);
std::cout << "DMST-BIC obtained the following model: " << result_dmst
<< std::endl
<< "BIC score of the learned model on the whole dataset: "
<< node_score(result_dmst) << std::endl;
std::cout << "DMST + GS obtained the following model: " << result_gs
<< std::endl
<< "BIC score of the learned model on the whole dataset: "
<< node_score(result_gs) << std::endl;
save("dmst_bic", result_dmst);
save("dmst-gs_bic", result_gs);
// On Windows (Visual C++, MinGW) only.
#if defined(WIN32) || defined(_WIN32)
std::cout << "Press any key to terminate..." << std::endl;
getchar();
#endif
return 0;
}
regression_serv::regression_serv(const framework::server_argv & a)
:jubatus_serv(a)
{
gresser_.set_model(make_model());
register_mixable(framework::mixable_cast(&gresser_));
}
int
main (int argc, char *argv[])
{
GtkWidget *window;
GtkWidget *vbox;
GtkWidget *scrolled_window;
GtkWidget *tree_view;
GtkTreeModel *model;
GtkCellRenderer *renderer;
gint col_offset;
GtkTreeViewColumn *column;
gtk_init (&argc, &argv);
window = gtk_window_new (GTK_WINDOW_TOPLEVEL);
gtk_window_set_title (GTK_WINDOW (window), "Card planning sheet");
g_signal_connect (window, "destroy", gtk_main_quit, NULL);
vbox = gtk_box_new (GTK_ORIENTATION_VERTICAL, 8);
gtk_container_set_border_width (GTK_CONTAINER (vbox), 8);
gtk_box_pack_start (GTK_BOX (vbox), gtk_label_new ("Jonathan's Holiday Card Planning Sheet"), FALSE, FALSE, 0);
gtk_container_add (GTK_CONTAINER (window), vbox);
scrolled_window = gtk_scrolled_window_new (NULL, NULL);
gtk_scrolled_window_set_shadow_type (GTK_SCROLLED_WINDOW (scrolled_window), GTK_SHADOW_ETCHED_IN);
gtk_scrolled_window_set_policy (GTK_SCROLLED_WINDOW (scrolled_window), GTK_POLICY_AUTOMATIC, GTK_POLICY_AUTOMATIC);
gtk_box_pack_start (GTK_BOX (vbox), scrolled_window, TRUE, TRUE, 0);
model = make_model ();
tree_view = gtk_tree_view_new_with_model (model);
gtk_tree_selection_set_mode (gtk_tree_view_get_selection (GTK_TREE_VIEW (tree_view)),
GTK_SELECTION_MULTIPLE);
renderer = gtk_cell_renderer_text_new ();
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Holiday",
renderer,
"text", HOLIDAY_COLUMN, NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
/* Alex Column */
renderer = gtk_cell_renderer_toggle_new ();
g_signal_connect (renderer, "toggled", G_CALLBACK (alex_toggled), model);
g_object_set (renderer, "xalign", 0.0, NULL);
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Alex",
renderer,
"active", ALEX_COLUMN,
"visible", VISIBLE_COLUMN,
"activatable", WORLD_COLUMN,
NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_sizing (GTK_TREE_VIEW_COLUMN (column), GTK_TREE_VIEW_COLUMN_FIXED);
gtk_tree_view_column_set_fixed_width (GTK_TREE_VIEW_COLUMN (column), 50);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
/* Havoc Column */
renderer = gtk_cell_renderer_toggle_new ();
g_signal_connect (renderer, "toggled", G_CALLBACK (havoc_toggled), model);
g_object_set (renderer, "xalign", 0.0, NULL);
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Havoc",
renderer,
"active", HAVOC_COLUMN,
"visible", VISIBLE_COLUMN,
NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_sizing (GTK_TREE_VIEW_COLUMN (column), GTK_TREE_VIEW_COLUMN_FIXED);
gtk_tree_view_column_set_fixed_width (GTK_TREE_VIEW_COLUMN (column), 50);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
/* Tim Column */
renderer = gtk_cell_renderer_toggle_new ();
g_signal_connect (renderer, "toggled", G_CALLBACK (tim_toggled), model);
g_object_set (renderer, "xalign", 0.0, NULL);
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Tim",
renderer,
"active", TIM_COLUMN,
"visible", VISIBLE_COLUMN,
"activatable", WORLD_COLUMN,
NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_sizing (GTK_TREE_VIEW_COLUMN (column), GTK_TREE_VIEW_COLUMN_FIXED);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
gtk_tree_view_column_set_fixed_width (GTK_TREE_VIEW_COLUMN (column), 50);
/* Owen Column */
renderer = gtk_cell_renderer_toggle_new ();
g_signal_connect (renderer, "toggled", G_CALLBACK (owen_toggled), model);
g_object_set (renderer, "xalign", 0.0, NULL);
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Owen",
renderer,
"active", OWEN_COLUMN,
"visible", VISIBLE_COLUMN,
NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_sizing (GTK_TREE_VIEW_COLUMN (column), GTK_TREE_VIEW_COLUMN_FIXED);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
gtk_tree_view_column_set_fixed_width (GTK_TREE_VIEW_COLUMN (column), 50);
/* Owen Column */
renderer = gtk_cell_renderer_toggle_new ();
g_signal_connect (renderer, "toggled", G_CALLBACK (dave_toggled), model);
g_object_set (renderer, "xalign", 0.0, NULL);
col_offset = gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Dave",
renderer,
"active", DAVE_COLUMN,
"visible", VISIBLE_COLUMN,
NULL);
column = gtk_tree_view_get_column (GTK_TREE_VIEW (tree_view), col_offset - 1);
gtk_tree_view_column_set_cell_data_func (column, renderer, set_indicator_size, NULL, NULL);
gtk_tree_view_column_set_sizing (GTK_TREE_VIEW_COLUMN (column), GTK_TREE_VIEW_COLUMN_FIXED);
gtk_tree_view_column_set_fixed_width (GTK_TREE_VIEW_COLUMN (column), 50);
gtk_tree_view_column_set_clickable (GTK_TREE_VIEW_COLUMN (column), TRUE);
gtk_container_add (GTK_CONTAINER (scrolled_window), tree_view);
g_signal_connect (tree_view, "realize",
G_CALLBACK (gtk_tree_view_expand_all),
NULL);
gtk_window_set_default_size (GTK_WINDOW (window),
650, 400);
gtk_widget_show_all (window);
window = gtk_window_new (GTK_WINDOW_TOPLEVEL);
gtk_window_set_title (GTK_WINDOW (window), "Model");
g_signal_connect (window, "destroy", gtk_main_quit, NULL);
vbox = gtk_box_new (GTK_ORIENTATION_VERTICAL, 8);
gtk_container_set_border_width (GTK_CONTAINER (vbox), 8);
gtk_box_pack_start (GTK_BOX (vbox), gtk_label_new ("The model revealed"), FALSE, FALSE, 0);
gtk_container_add (GTK_CONTAINER (window), vbox);
scrolled_window = gtk_scrolled_window_new (NULL, NULL);
gtk_scrolled_window_set_shadow_type (GTK_SCROLLED_WINDOW (scrolled_window), GTK_SHADOW_ETCHED_IN);
gtk_scrolled_window_set_policy (GTK_SCROLLED_WINDOW (scrolled_window), GTK_POLICY_AUTOMATIC, GTK_POLICY_AUTOMATIC);
gtk_box_pack_start (GTK_BOX (vbox), scrolled_window, TRUE, TRUE, 0);
tree_view = gtk_tree_view_new_with_model (model);
g_object_unref (model);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Holiday Column",
gtk_cell_renderer_text_new (),
"text", 0, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Alex Column",
gtk_cell_renderer_text_new (),
"text", 1, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Havoc Column",
gtk_cell_renderer_text_new (),
"text", 2, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Tim Column",
gtk_cell_renderer_text_new (),
"text", 3, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Owen Column",
gtk_cell_renderer_text_new (),
"text", 4, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Dave Column",
gtk_cell_renderer_text_new (),
"text", 5, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "Visible Column",
gtk_cell_renderer_text_new (),
"text", 6, NULL);
gtk_tree_view_insert_column_with_attributes (GTK_TREE_VIEW (tree_view),
-1, "World Holiday",
gtk_cell_renderer_text_new (),
"text", 7, NULL);
g_signal_connect (tree_view, "realize",
G_CALLBACK (gtk_tree_view_expand_all),
NULL);
gtk_container_add (GTK_CONTAINER (scrolled_window), tree_view);
gtk_window_set_default_size (GTK_WINDOW (window),
650, 400);
gtk_widget_show_all (window);
gtk_main ();
return 0;
}
END_TEST
void model_setup(void)
{
reset_errno();
model = make_model();
assert_not_null(model);
assert_noerr();
reset_errno();
Mapping *root = make_mapping_node();
assert_noerr();
assert_not_null(root);
reset_errno();
Scalar *foo1 = make_scalar_node((uint8_t *)"foo1", 4, SCALAR_STRING);
assert_noerr();
assert_not_null(foo1);
reset_errno();
Scalar *one_point_five = make_scalar_node((uint8_t *)"1.5", 4, SCALAR_REAL);
assert_noerr();
assert_not_null(one_point_five);
reset_errno();
Sequence *one_value = make_sequence_node();
assert_noerr();
assert_not_null(one_value);
reset_errno();
sequence_add(one_value, node(foo1));
assert_noerr();
reset_errno();
sequence_add(one_value, node(one_point_five));
assert_noerr();
reset_errno();
mapping_put(root, (uint8_t *)"one", 3, node(one_value));
assert_noerr();
reset_errno();
Scalar *two_value = make_scalar_node((uint8_t *)"foo2", 4, SCALAR_STRING);
assert_noerr();
assert_not_null(two_value);
reset_errno();
mapping_put(root, (uint8_t *)"two", 3, node(two_value));
assert_noerr();
reset_errno();
Scalar *three_value = make_scalar_node((uint8_t *)"false", 5, SCALAR_BOOLEAN);
assert_noerr();
assert_not_null(three_value);
reset_errno();
mapping_put(root, (uint8_t *)"three", 5, node(three_value));
assert_noerr();
reset_errno();
Scalar *four_value = make_scalar_node((uint8_t *)"true", 4, SCALAR_BOOLEAN);
assert_noerr();
assert_not_null(four_value);
reset_errno();
mapping_put(root, (uint8_t *)"four", 4, node(four_value));
assert_noerr();
reset_errno();
Document *doc = make_document_node();
document_set_root(doc, node(root));
assert_noerr();
assert_not_null(doc);
reset_errno();
model_add(model, doc);
assert_noerr();
}
